Array 1 95041-93304 **** Predicted by CRISPRDetect 2.4 *** >NZ_PURV01000011.1 Escherichia coli strain GER_MD15_1507_Eco_052 EC-BIM052-52-VE-DEU-2015-033-PK_S66_90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95040 29 100.0 32 ............................. TGAAATTATCATGCCAGCGCCATCTTGATGAT 94979 29 96.6 32 ............................A TCGAAAAGCTGGCGGTAAACAAAACGCGTGAA 94918 29 100.0 32 ............................. TCGCTTTTGGCTGTCTGGGCGAATTCCGGAAC 94857 29 100.0 32 ............................. TTCAGGAAACCGGCGACAGCTCAGCTGATAAT 94796 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 94735 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 94674 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 94613 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 94552 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 94491 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 94430 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 94369 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 94308 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 94247 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 94186 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 94125 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 94064 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 94003 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 93942 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 93881 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 93820 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 93759 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 93698 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 93637 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 93576 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 93515 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 93454 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 93393 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 93332 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121440-120740 **** Predicted by CRISPRDetect 2.4 *** >NZ_PURV01000011.1 Escherichia coli strain GER_MD15_1507_Eco_052 EC-BIM052-52-VE-DEU-2015-033-PK_S66_90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121439 29 100.0 32 ............................. CCCTTCTCTGACAGGTTTGCGGGCCTGTACCC 121378 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 121317 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 121256 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 121195 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 121134 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 121073 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 121012 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 120951 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 120890 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 120829 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 120768 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //