Array 1 1744722-1746337 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040063.1 Salmonella enterica subsp. enterica serovar Infantis strain SPE100 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1744722 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 1744784 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 1744845 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 1744906 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 1744967 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 1745028 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 1745089 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 1745150 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 1745211 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 1745272 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 1745333 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 1745394 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 1745455 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 1745516 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 1745577 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 1745638 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 1745699 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 1745760 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 1745822 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 1745883 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 1745944 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 1746005 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 1746066 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 1746127 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 1746188 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 1746249 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 1746310 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1762620-1764517 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040063.1 Salmonella enterica subsp. enterica serovar Infantis strain SPE100 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 1762620 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 1762681 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 1762742 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 1762803 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 1762865 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 1762926 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 1762987 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 1763048 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 1763109 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 1763170 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 1763231 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 1763292 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 1763353 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 1763414 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 1763475 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 1763536 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 1763597 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 1763658 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 1763719 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 1763780 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 1763838 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 1763899 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 1763960 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 1764021 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 1764082 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 1764143 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 1764204 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 1764265 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 1764366 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 1764427 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1764488 29 93.1 0 A...........T................ | A [1764514] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //