Array 1 77225-77656 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFG01000019.1 Porphyromonas gingivalis strain 84_3 isolate 84_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 77225 36 100.0 30 .................................... TTTCTTTTTAGTTGCCATAACGGACAAATT 77291 36 100.0 30 .................................... ACGCCGAGCCACACACTGATACGATTATAT 77357 36 100.0 30 .................................... TTCTTTGTTTATCACCCTCACGGAGTTGGC 77423 36 97.2 30 ...................T................ AGGTCGGGAATATCCAAGAAGATGTTTTGA 77489 36 100.0 30 .................................... CAGTCGCGACTTATCCGCGATCTCTCCAAT 77555 36 100.0 30 .................................... ATAATAGTTCTGAGGGTAAAAGAGGTAGTA 77621 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.6 30 GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC # Left flank : AGCGAAAACCTATTATTTCAGGCCGGCCTGCATCCGTGGATTCCTGTCCGAACTGACGGACGAATTTTATAAGAATGGGAACGGTATTTTCTTGTCTAAAGAGATTATTTCCCGTATCTTTGAGTATAGGAGTATCGTTTACGGCCTTTTGCTTTCGGAGAGGCAGAACTCGGATGAGAGGATTGTGATGAACAAGCCCGAAACGGCCGAACGGATGATCAGCATTCATCAGGAGCTTACCCAAACCGTTAGAGAAGCCATCGCACTGAAGAAGCGAACGTTGAACTTTTGAGTGCGAACCGCCAGGAGCATAGGAATGATTTTTTGAGAGAAAATAGCATAAACCCGACTGTAGAGAGTCATTTTTTCAATCCTAATATCCCACTAAAATGATGATGACAGACTGTTTTTCGCCGGCTTGCAGTGGCTCCAAAGCCTTACCGTCACTCACTTTCTGTGGAATGATGACTTCTCAATCGGTTTCAAATTCGATGGGGGTA # Right flank : CATGATTCCTGATTGGTGGCTTGGGCGTTGGAATGTGCAGTAGTGTGGGGATTCTTTCGCGTTGGGGCTTTTTCGCTACATTTGCAGGCGGACGAGGTGCTCCCCTCTTCGGTGAATTCGTGTCGGGGAGTGCTTTCCTTTTTTATGGAATGACTTTGTAAACGACTAAATGAATGATAGATATGTGCTCCGATCCCTCTCTTTCCTGCATTCTTATTCGGCCGGTTTCGTTCGGCCTGTGTGGTTATATGCCGGCGCGTATAGCTGATACAAGCCTGCTGTATGAGCGGTAGAGCTTGAGAGCCGTTTCGTACCCCTTCGAAATAGATGAGGCACCCACCGAGTTCCTGCACGAACTCGGTGGGTGCCTCTTTATTTATACCTCCCCTAAAGGCCTTTCGAGGTGTCCGATTTATATCAAATCGGGCTTACAATCTATATATTTATCCCAATCGATTTATATATAAATTAAAAATGATTTATATACAAAATGAAAACGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 96110-90744 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFG01000001.1 Porphyromonas gingivalis strain 84_3 isolate 84_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 96109 30 96.7 38 A............................. TTGTTAGCAGATGAAGACGATTTCTATAATGTTACAAA 96041 30 96.7 35 A............................. GCGTACAAAAAGGCGAACCGCTCTCGGCCGCCACA 95976 30 100.0 36 .............................. TGCCCGACTTATTCAAATTCTTTACTGAAAAAGATA 95910 30 100.0 36 .............................. GCCCGTCTCGGCGCGAAGGGAGGAGCAATACACGAC 95844 30 100.0 37 .............................. GAGGGCAAACAAGATCAACACGGCCAAATAGTCGTCG 95777 30 100.0 36 .............................. ACGAGGTCTTTAATCGCCTTGCCGCCGAAAATTTTA 95711 30 100.0 35 .............................. TAATCGCCTGTACGTCCGCCATCGCTTGCTCGAAT 95646 30 100.0 36 .............................. TGATACTTATAAATTATACACTGATGATGTGTTAGA 95580 30 100.0 37 .............................. AATTGTATTAATGCCTTTAAGTTTACCGGTGCTGGAG 95513 30 100.0 35 .............................. AAGAAACAAATTACTAACAAAAAAATTTTTAGAGA 95448 30 100.0 34 .............................. ACGAATATCTCGCTAAATCAATAAGTTTTTATCA 95384 30 100.0 36 .............................. CAACGAATATCTCGCTAAATCAATAAGTTTTTATCA 95318 30 100.0 34 .............................. GATCGACAAGACGGACGAAGTCACAAGCTGGCGG 95254 30 100.0 36 .............................. CTTCTATATACATACGAATAAGTCGAGCAGTCAGGT 95188 30 100.0 36 .............................. TATCCTTTCCGTTGAGTCGTACCCCCACGCTCATCG 95122 30 100.0 36 .............................. GTAAGATTTCGACACACTCAGTCCGTATTTTACTTT 95056 30 100.0 36 .............................. TACGCACGATGTAAAAGATAATAAGATTTATAAGGA 94990 30 100.0 36 .............................. ACATACAGACGATATATTTAATGAGGGGGTGTGGTG 94924 30 100.0 36 .............................. ACATACAGACGATATATTTAATGAGGGGGTGTGGTG 94858 30 100.0 35 .............................. TTTGTGCTATTTACGAATATCAAATGCAGACACTA 94793 30 96.7 37 .................A............ TAAATCAATTAAACAGTATCAAATGCTAAACGGGTAT 94726 30 100.0 37 .............................. ATATTAATAGAAACTTTTTCTTTCGTTCTAATTATGT 94659 30 100.0 35 .............................. TTGAGCAAATACAAAAGTATATCGAAAAAGAAGAT 94594 30 100.0 36 .............................. CTTGTACCATTTTACCGTCTTGCCGCTGCCCTGCAC 94528 30 100.0 36 .............................. GGCAGGAACTGCCATCAACACTACTGGTACTATTGG 94462 30 100.0 36 .............................. TAATCAATGAGATTAGAATAAAAGCCTCCTTCATAT 94396 30 100.0 34 .............................. TTTACTAAGATTAATGCAGATGAGCTGTTACCAA 94332 30 100.0 35 .............................. CTCTTGAAAAAGATTATACTGTTGCAGGAAAGGTT 94267 30 100.0 36 .............................. AAAACGAAGCATGTTATGTTGAAAAAACACTCAAAT 94201 30 100.0 34 .............................. CCGCCCCCATCGCGTTGTTGAACGAGGCGATTTC 94137 30 100.0 36 .............................. TTACACTTTCACATACAGACTCTCTGACGACAAGGG 94071 30 100.0 36 .............................. TTACCGCCAACACTGTGCATATCGTCGACAAAGTGA 94005 30 100.0 36 .............................. CGAAGCTCTCCATAGGCGAACTCGAACACCTCTGCG 93939 30 100.0 36 .............................. CCTGTCCATCATCAGCTCGGGGCAGGGCAGGATGAT 93873 30 100.0 36 .............................. CGACAGAGAGGGCGGCAAAGGCTTTGCCCGCGATGC 93807 30 100.0 36 .............................. GAGCGTCCTTATACAGCTGCTTGAGTTCCTCCAACT 93741 30 100.0 36 .............................. CGTCAAACGCTCAGCAAGTGGAAAGAGGCGGGGAGC 93675 30 100.0 35 .............................. TCAAGGGGGATATCATCACGCGAGGAGACGGCGAC 93610 30 100.0 34 .............................. TTGACAGTCCGTGGGCACCCGTCAAGGCGGAACC 93546 30 100.0 36 .............................. ACGCACAGGCAACTATTAGCGTGTCGGGGTCTAATC 93480 30 100.0 36 .............................. TTTCGATAAGCGTCTCAATAGCGGTGCGGAGCTGCA 93414 30 100.0 35 .............................. CGCGTCCGCACTATCAAAAAAGCCCCTCTACCACA 93349 30 100.0 36 .............................. CTTTCTTGATTGTCTGACTTTGCTGTCGAATAGCGG 93283 30 100.0 36 .............................. ATATCTGTATGCGCCCGTTCCGCTGCTCCACACGCA 93217 30 100.0 37 .............................. TTTATCCAAACCGTCCTCATATAAAAAAGGAGACTTC 93150 30 100.0 35 .............................. ATGGTTGTTCCCTCCACAGGTTCTAAACCACATTT 93085 30 100.0 37 .............................. TAGATCAAACCAGAATCCAACTACCTTATCAGAATCT 93018 30 100.0 36 .............................. ACAAAACCACTATCCAATCTACCTGAGATTTATGAG 92952 30 100.0 37 .............................. AGGTTCTTTCTGAGGGCCACACAGCAGGTATTTGAAC 92885 30 100.0 37 .............................. GCAGCTATGAGACGGCAGAATCGAGAGCATTGTATAG 92818 30 100.0 38 .............................. TTTCGACCAGCCAGCCGAGCAGCTTCAGCAGCCACTCG 92750 30 100.0 34 .............................. CTTGCGAGTTCTGCATCCTTGAGGGCATTGACAG 92686 30 100.0 36 .............................. ACATACTGAAGAATACGCTCTGCGCTGCCGTCCTCA 92620 30 100.0 36 .............................. GTATATTTGCATCGTTAGCGGAACCAATTGCACCAG 92554 30 100.0 37 .............................. TACGATCTTTTTGTTATCCCTCTTCGCGAGATTGTCG 92487 30 100.0 36 .............................. CAGTAACGAGAGATGATTACTTCTCAACAGAAAAAA 92421 30 100.0 36 .............................. CAGAGAAAGAGGGGAGGGAGGAGCGATAGACGAAGT 92355 30 100.0 36 .............................. AGCTTTTTGTTCCGATACACGGCCAAGAAAACATCG 92289 30 100.0 35 .............................. TACCGTTTACCTGCAGACTTGTGCCCACCCACTTG 92224 30 100.0 36 .............................. CCTGTCCATCAGCAGCTCGGGGCAGGGCAGGATAAT 92158 30 100.0 35 .............................. ACTTCGCGTCGATGCTTGCGAGTTCTGCATCCTTG 92093 30 100.0 37 .............................. CCTTGTATTTTCGACTTCTTGTCGTTTTCGAGAGCAG 92026 30 100.0 34 .............................. CTCCGCCTGCAGTCGCAGCATCTTGAGCTGCGAC 91962 30 100.0 35 .............................. TCACTCATCCTATTTCGTATTTTATTGACATTCCT 91897 30 100.0 37 .............................. AAACTCTTCGCGTGCGGAGACGCCCGCCGCGCCCGTC 91830 30 100.0 37 .............................. TTTTTGGGCTAAGTGGATGCAGACAAAAGACCCGCGC 91763 30 100.0 37 .............................. CTGAACGGAAAGGATATAACGGATCAGGTGCTGGCCA 91696 30 100.0 35 .............................. TTCGACAGTAAAGTTTTGCCTCATCGTTTCAAATT 91631 30 100.0 37 .............................. ACTGCATAGACAGTTCAAGCTTCGTTGTCAATCTCTT 91564 30 100.0 35 .............................. TACGATGAGAGTTTATTTCTCAGCGACTTGGTGGT 91499 30 100.0 35 .............................. ATTTTCAAGATTTCTTGGCTTAAATTTTCCAGTCT 91434 30 100.0 38 .............................. TTTTCTGAAAAATTTAGCCCAGACAGCTCAGATCCAAT 91366 30 100.0 37 .............................. AAAGAATAGACTTTAACAAATTATTAAAATCTTCTTC 91299 30 100.0 35 .............................. ATCCAATGATTAATAACGGCATTGAGGTTATTAAT 91234 30 100.0 35 .............................. AAGACAAAGAATAGACGAATCCAAACTATAAAATA 91169 30 100.0 36 .............................. CAGCGGCTGATACGCCTTACCCCAGTCGTACAAGCC 91103 30 100.0 36 .............................. GACTTCTGTGTAGTCGAATCGATGAGTCCGCCCTGA 91037 30 100.0 36 .............................. GCACGAAGCTGCATTCGAAGCCCTCTACCTCGTTAG 90971 30 100.0 36 .............................. CGTAGTCGAGCTTCGTGTACTGACGCTCGACAACAT 90905 30 100.0 36 .............................. TGTCTACTCCCCGAAGCTGCAGCATAACCTCCGCTT 90839 30 100.0 36 .............................. CGTATTTGTCCGCTCAATTGCGCCGCATCGAGCAGT 90773 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 82 30 99.9 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TTTTAATACTCAAATATACAAAATAACTCCCTATTATACAATGAATTAACAAGCAAAATATACGCCAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATA # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGGTATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATAACAAAAGGCTTGATGAATTTGCTCGAATCGACGCTTCAAAAGATAGATAGCAGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTACTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAGCATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //