Array 1 66059-63571 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEZO01000003.1 Aliivibrio finisterrensis strain A15 NODE_3_length_205308_cov_108.659, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 66058 28 100.0 32 ............................ ATGGCTAGGACCAAGCACAGCAAAGGCTTATG 65998 28 100.0 32 ............................ ACTAGCGCAAATTTGGACAATTTCCGCTAACC 65938 28 100.0 32 ............................ TTGTGTTTAGTTGTTGCAATAAGCTCCCTAGG 65878 28 100.0 32 ............................ ATTCGAGCAGCTTGAATGTACGCCTTATGTCT 65818 28 100.0 32 ............................ TCCTCTCGCAAAATTAGCAATTGCTAATTTAG 65758 28 100.0 32 ............................ AAGAAAACAGAAAACAGGCCAAAAACGGTTGA 65698 28 100.0 32 ............................ GTTAACTAACCATTGACCCTCAAATCCTTTGT 65638 28 100.0 32 ............................ AAAAGCCACGTAGTGTATGACCAAGAAATGGC 65578 28 100.0 32 ............................ GTTCAGCAATAAATCAATCGCACGACGATATT 65518 28 100.0 32 ............................ AGAACGGTATAAGCAATATCAAACCCATCAAC 65458 28 100.0 32 ............................ TGACGTTGGTAAATCTTGCTTGTTACTGGGTA 65398 28 100.0 32 ............................ ATGCTCATGAAAGAGATTGCAGCTAGGTTATA 65338 28 100.0 32 ............................ ACGTTGGAGAAGATGACTCTTATGTTGTTGTT 65278 28 100.0 32 ............................ GAGAACTACGCATAACCAGTACTTATCTTTTT 65218 28 100.0 32 ............................ TACGATTTTCATTTTAACGCCACATTTTCCAA 65158 28 100.0 32 ............................ ATGGAAAGTTTATGGGAACTTGGTTTGATTTC 65098 28 100.0 32 ............................ ACTGAGAAATTCAAAACTTGCTGTGGAAAATG 65038 28 100.0 32 ............................ CTTTAATTTCTTTAATTGGTTACATAACCCAT 64978 28 100.0 32 ............................ TGAAGCTTAAATGGTTATAAGCAGTCGCCTCA 64918 28 100.0 32 ............................ TAGCACTAAATAACCAAACAATGAGCAGTCGA 64858 28 100.0 32 ............................ TATTAATTCGTGATGGCCGTTAACTTGAGTGT 64798 28 100.0 32 ............................ TTCTTAGGGAATCCATTCAATTGGATCATTAC 64738 28 100.0 32 ............................ TTGTTCGCCCCCTTACAAATGAATTTGAAAGC 64678 28 100.0 32 ............................ TCTCATAATGCGCACTTAGCTACGGCTTCTTT 64618 28 100.0 32 ............................ TTTGGAGAACGGCCGCGAGGATTTAATCTAAA 64558 28 100.0 32 ............................ ATCCAGTACCAGACACCAGAAGTGACGTAGTA 64498 28 100.0 32 ............................ GGCTAAAGACGATCCACCACTTGTTACTCGTT 64438 28 100.0 32 ............................ TAATTCTCAACATTTCTGTCCTTACCCATCCA 64378 28 100.0 32 ............................ TTGCTGATAGATCAGATGATTTATCAACCAGT 64318 28 100.0 32 ............................ TTGACTACTACGTAGAATTTAACAAAGTTAGA 64258 28 100.0 32 ............................ GACAAGTGTGTAAGCTCGGCTGAATCTTGTAT 64198 28 100.0 32 ............................ CGCTACACGGTCAAGCAAAGGGTAGTGATGGA 64138 28 100.0 32 ............................ ACACTCAATCTGGTCTATAACCATGTTATTTT 64078 28 100.0 32 ............................ AATCCAAAGCGCAATGAAATCGGTATTGTGTG 64018 28 100.0 32 ............................ ATCAACTTTGCATCGATAGCTAAAGTGAATAC 63958 28 100.0 32 ............................ TTCCACAATGAAGATGATCGAGAGTTAGATTC 63898 28 100.0 32 ............................ TTGAGTTAATCCGCTTGGCAATGCTGCTGGAT 63838 28 100.0 32 ............................ AAGAAAACGAGATCCGATAATTTCATCACTCA 63778 28 100.0 32 ............................ AATAGACAGGCGATTGACGAGAACCAACCGAA 63718 28 100.0 32 ............................ ACCAGAAAAACCAAATAACATTATCTATATCC 63658 28 100.0 32 ............................ TAACATCCCGTAAGCCAACATGGCTCTAGAGT 63598 28 75.0 0 ...........TG........AA.AG.G | ========== ====== ====== ====== ============================ ================================ ================== 42 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGAAGCAGTTATTTGAGATAAATTGGCTGAAAGGCTTACGTGATTATTGCTCTCAAACATCAATTTCATTGGTTCCAGAGGGTTGTCAATATCGCTGTGTAAAACGCAAACAAGCTAAAAGCGCTAATAATAAACGCAAGCGTTCTATTGCTAAAGGTTGGTTGAGTGAAGAAGAAGCGACATTGAAAATTGGTAATGAACAGCAAAAAATGTTGCGCTTACCCTTTGTTCAATTAAAGAGTACATCCACAGGACAGGTGATGAAGTTATTCATTGAACATGGTGGATTGCAAGATAAAGCGGTTGAAGGTCAGTTTAATCGCTATGGATTAAGCTCATCAGCAACGGTCCCTTGGTTTTAACCCAAAATAACCAAAAAAATGGCTCTTTAAAATGAAGTAATAAAATCAGTAAGTTACAATAGGTAGGGGAAATTAGGTAAAAATGGGTATTTTCACTTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTATT # Right flank : TTAAGAAAGAAGTTTGATAGCTATACCTCATATACTTTTAATATTTGCGGTATGACAGCGTTGCTAGAAAATTGATCTTGAATGGTTCTTTGGGCTGCGTGTTGAATTTCAACTTTATTAATCGATGACAATTCAAACCAGTGGAGTAGGGCTTGAGAAAGAGCTTCTGGCTCGGTTATCCATCCATTCATTTCTGGCTGTATGAGTTTACTGATATTACCCACAGGGGTTGATATTACTGGTATTCCTCTTCCCATCGCCTCTAATGCCGTCATGGGGAGCCCCTCGTAGCGAGAGCAGATAATCAGTAAGCCAATATCATTCCAAATGGTGTCCATTGAATCTTGATGTCCATGAAAAATTACGTTGTTTGGAAGGTGTTTAATCAGCTCTTTCTCCATCGGGCCTGAACCATAAATATGAAAAGAGTGATTAGGGTGTTTCTTTGCTAATTCGATGAATCTATCAGGGGCTTTTTCATGGCTTAAACGACCTACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 76931-75643 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEZO01000003.1 Aliivibrio finisterrensis strain A15 NODE_3_length_205308_cov_108.659, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76930 28 100.0 32 ............................ ATCGGAATAACAGCAATTATATTAATTTTATT 76870 28 100.0 32 ............................ AAATAAATACAAAGATAATCGCATTGACAATA 76810 28 100.0 32 ............................ TCAGTATGGTGCAACCCGCCATATAGCGATAT 76750 28 100.0 32 ............................ AGCAAGACGAAGAAGAAAAAACAGAATAAGAA 76690 28 100.0 32 ............................ ACAGTCAAAGATAAACCCACGACCCAAGAATC 76630 28 100.0 32 ............................ AAGCCGCCACCTGCTACGACAAAAAATATCAT 76570 28 100.0 32 ............................ AACAACAGTTTACCACGTTGGAGAAGATGACT 76510 28 100.0 32 ............................ TGTTAACTGGATAGCTGAGGCTATTGCTGATT 76450 28 100.0 32 ............................ ATCAAAAGAAAATAAAAAAAGATGTAAATCTT 76390 28 100.0 32 ............................ ATCTAAGTTTGATGCTAATCCATTTTTTCAAG 76330 28 100.0 32 ............................ AGAAAGGTTGATGGAGATTGGTACTGCTGCGC 76270 28 100.0 32 ............................ CACCGCCATTGGAGGGGATAAAAACTCGTAAA 76210 28 100.0 32 ............................ TCGCGCAGCTCGTCAAAAATAACAAAGTGCCG 76150 28 100.0 32 ............................ AAGCAAGTCCAATCCGTCTAGTTGCTCCGTCC 76090 28 100.0 32 ............................ ATTGACGATTTTCACGAAATGTTTGGCCGTGA 76030 28 96.4 32 ............G............... TAGACCGTAAAGCAATACCTAAGTCTGACCCA 75970 28 100.0 32 ............................ ACAAAGCATCCACGGTTCAGTTCTTACAACCC 75910 28 100.0 32 ............................ ACCGCCTCTTCAAATTGACTGACACATTCGTA 75850 28 100.0 32 ............................ TTTACTATGTTTCGGCGGCGAACCGCTAATAC 75790 28 100.0 32 ............................ ATTAAAAATTATCTCTAATCAATTTCCAAATG 75730 28 100.0 32 ............................ ACCACTCTTTTTAAAGCTAATCCTGGCAAACC 75670 28 67.9 0 .......A...C.....T..AA..ATTG | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATAAAGTAAAGGGAGTTACATAACTCGCACTTAATTGCTTTTCAACCTGATCAACAAGGCGCTGTTGGTTGCACCATAAAATGCAGTTATATTTTTGGTGATTAATGCTTTTAATTAGATTGATTAAGCAGACTTCAGAACCACGGATCCAATCATCACCATAATGAACAAACAGTAAGGTTGTTTTTGTTGTATTTTCCATAGCACACCTTCCTCGCATTCTCTCTGATATAAGAGATAGAGCAAGGGCAGTGCCAGATTGTAATTGTTTTTATTTTATTGATTTTTAAAGGGAATTATTATGTGTATAGATCAGTTTTCTCAAATTGAGAATGTGGTTTTTTAAATTGGGAATCAGAGAGATAAAAAATACCAAAAAAAATAACGTTAACAATAGAATAATAAAATCAATGAGTTACAGGTTGGTTGGGAAAGTAGGTTAAAAAGTAATATTTAAGCTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTACT # Right flank : ATTAAAATAACGAGATAACCATCATAAAATATCGATAAATATACTATTTTATTTATGAAATAGTATTATAGTAACTCTTTGTTTAATATTAACTTTATTGATAAGGCTGTTAATAGTGGAGCAACTCTCTCGTTTATCAATTATTCATAAATTACTTAGCCAATCCAAATACCCAGTACCGAAAAGTAAACTTCTAGAAGCGCTAGAGTGCTCAGAATCCACATTTAAACGGATACTTCGTAAAATCAATGACGAATTTGATGCTTCAATCTCATACGATAGAGAACTAAAAGGATATGCATACGATTCTGATAGTCATCAACTTCCATTATCGTATCTGAATTTTACTGATAAAGAATGGTTTGCCTTATTAACCGCAGAAAAACTATTTACCGATCTACATACAGGATCATTAAATAAAGAGCTAGAAGGGATCAAACACGTTCTACAAAAGACAAAAAATCGAGCAACAGATTTTGGCATCGCTAATAAAATAGAAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //