Array 1 147745-145003 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCHZ01000002.1 Lactococcus raffinolactis strain 3042 NODE_2_length_235662_cov_1200.012682, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 147744 36 100.0 30 .................................... AGCAACGAACCAATAACTTTAGGTGGCATA 147678 36 100.0 30 .................................... ATCGTTTGCGATACCAACCCAGACCACCCA 147612 36 100.0 30 .................................... ATCTGTTTGAGGACATCATTTTAATGCAAT 147546 36 100.0 30 .................................... TGACTTTGACGCTGATTATGTCGTACCAGT 147480 36 100.0 30 .................................... CAACGGATAGAACAGAATTGAATACATTGC 147414 36 100.0 29 .................................... TTATAACTTGATTATACCACAGAAAGGGG 147349 36 100.0 30 .................................... CCGCAAGCGAGCGCAGAAAGACCCTAATTT 147283 36 100.0 30 .................................... TCTCGCTTCGTCTTGCGCCTTGGCGTCTCT 147217 36 100.0 30 .................................... ATTCGGTTATTACGTAGTTACATCAGATGG 147151 36 100.0 30 .................................... TTGATTCTGTAATAGCTTCAATGACTGTTT 147085 36 100.0 30 .................................... GAAAAACTTTATCACTCAAACCGAACTATA 147019 36 100.0 30 .................................... GGGTAGCCGGTAAAGATTTTTCAATTGCTG 146953 36 100.0 30 .................................... AGGGATCGTTGAGTATAACGTGTAATGGTG 146887 36 100.0 30 .................................... GACGTTTCTTGATGCTGTCAAGTTCGTCAT 146821 36 100.0 30 .................................... TAACCATATAACACTATACAACTAACCACA 146755 36 100.0 30 .................................... TATTACTCATATATCTGGTCTAATTCCTCC 146689 36 100.0 30 .................................... CAGTATCTTTAGTGATAAGGTGGTGAACGA 146623 36 100.0 30 .................................... AGCTTTGCAAGTTAAAGCTGACGCAGAATA 146557 36 100.0 30 .................................... TATGTCAATTATTACAGTAACGGTTCAAGC 146491 36 100.0 30 .................................... TTGCGCAAAAAGAAAAGACTTATCAGTCTT 146425 36 100.0 30 .................................... CAGTTATAGATGATATGCCCGGTAAAGATA 146359 36 100.0 30 .................................... AGCAAGTTATTCAGATTGATGAAGTAGACT 146293 36 100.0 30 .................................... TAAGATGGCAACAGTTGCTGAATTAGAAGC 146227 36 100.0 30 .................................... TGACACGTTGCTTTTGAACAACACTTGATA 146161 36 100.0 30 .................................... ATATCTTAAATCCAGTCACTCATGAAGTCA 146095 36 100.0 29 .................................... TTCGTCATCAAACAAAGATGCGACATAAT 146030 36 100.0 30 .................................... ACATAAGCTCGCTTCGTTGACATAGGCTCC 145964 36 100.0 30 .................................... GTTAGCTCAGTTGGTAGAGCATTGTACTGT 145898 36 100.0 30 .................................... CTTTTGAGTTTTTAACTACCTTGACATAGC 145832 36 100.0 30 .................................... TTGAAGAAAGTCCGCTTGCACTACCTCGTG 145766 36 100.0 30 .................................... TTTCAAACTTCTATGCTGTTGATTGCGATG 145700 36 100.0 30 .................................... CAGCTGTTGAATCTATTGGCATTGAGGTAT 145634 36 100.0 30 .................................... CTTTTTTTGCCCATGAAAGCCATAAAGCGG 145568 36 100.0 30 .................................... GCCGACCCGCATATCCTAGACTATCACTTT 145502 36 97.2 30 ..............................T..... GCAAAAAAGGTAACGCCATCGGTTACTTGT 145436 36 100.0 30 .................................... ATCCATTCCTCAACGCATCCAAATGTATGG 145370 36 100.0 30 .................................... ATATATAAAGTAAATAAAGGAAAAAGAGGA 145304 36 100.0 30 .................................... TAACTCTTGCAGTTTTGTGCGTTGCCAGTC 145238 36 100.0 30 .................................... CACACATCAAAGAATAATCCAGAACCTCAA 145172 36 100.0 30 .................................... CAGTAGATAAGACAGAACTGTTCACACAGA 145106 36 100.0 30 .................................... ATATCTCAACGTTTCCTATCTGCTTGACAC 145040 36 77.8 0 .........................T.A.TGG.CTA | AG [145009] ========== ====== ====== ====== ==================================== ============================== ================== 42 36 99.4 30 GTTTTAGAGCTGTGTTGAATTGAATGCCTCCAAAAC # Left flank : ATTGGTTATGAACTATTAGATCACGAACTTGATTTAGAGCAAGATGAAATTACTATCCAAGAATTATTTCAGGTGCTAGGTGTTAAAATTGAGACGTCAAGTGATACTATTTTTGAAAAGCTATTCGAGATTTTACAGATTTTTAAATATTTATCCAAGAAAAAGATGCTTGTTTTTATCAATGTTGCGAGCTATTTGACTTTGGAAGAATTGCAAGCAATTCAAGAATTTTGTGAGTTGCAAAACCTAAAAACTCTTTTCTTGGAACGATATAAAACACCCGGATTTCCTCAGTATATATTGGATTCCGACTATTTTATTTGCACTGAAAATATGGTATAATTAAGGAAATATAAGTGTTTCAACACTTGAAATGTCCTTTGAAAATTTAATAAAATAAATTAAAAATCAACACCATGACATTCATTATTCTGAAGTCCTTCGCTAGGACAAATAGCAAAAATCTGAGACCTTAAAAATGTAGAAAAATTTTCTCCGAG # Right flank : GATTTGGATAAAAAAAAGACCTCAAATGGTATTTTTTTGACTCTATGAGTTATGTTAAAATTAGTGCATTGTTTTCAAGGCATTCAATACCACCAAAATTAGAAATAGAAAAATACAATTCATTGTTTTTTACAACTAAAAAGATATTCTATTTCCGTTACTAGTTTCTTAAACATCACAATAATTTACAAGCACAGTCACTCATTTTCACGTCTACCCCTAAGTAACTCTCTAACAGCTTCACGATCCTCATCAGACAGAGGATATCCATCAAATGAAGTAAATGAATCAAGAACAGTATTTAAATCATCAAATTTTGATGATTTTTTTTCGTCTGTATTACCTAGAAGATAGTCAGTTGAAACACTAAAAAAGTCAGCTAGTTGTTGAATATTTTTAGGATTTCTTTTTCCGTTTTCCCAAAGAGCATAGGATTGTTGAGAAACGCCAAGTTTTTCAGCGATCTCTTTTTGAGTAAGTTTAGTTTCTAAACGCAGCGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGAATTGAATGCCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //