Array 1 18920-17670 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHMI01000002.1 Escherichia coli strain PN85 PN85_NODE_2_length_559988_cov_25.7013_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18919 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 18858 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 18797 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 18736 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 18675 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 18614 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 18553 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 18492 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 18431 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 18370 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 18309 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 18248 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 18187 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 18126 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 18065 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 18004 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 17942 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 17881 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 17820 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 17759 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 17698 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9044-10231 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHMI01000031.1 Escherichia coli strain PN85 PN85_NODE_31_length_19996_cov_24.2448_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9044 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 9105 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 9166 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 9227 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 9288 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 9349 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 9410 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 9471 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 9532 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 9593 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 9654 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 9715 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 9776 29 96.6 32 ..........................T.. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 9837 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 9898 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 9959 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 10020 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 10081 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 10142 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 10203 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //