Array 1 41868-42355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWR010000022.1 Clostridium saccharobutylicum strain DJ002 NODE_22_length_58962_cov_29.378076, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 41868 30 100.0 35 .............................. GGCAATAAAAAAAGCCTTAGTATTAACTAAAACTC 41933 30 100.0 34 .............................. TGTTTTCCATCCATTTCGTACTCATTCGAATTTA 41997 30 100.0 35 .............................. GAAACTTTTTCTTTTTTATTTTTAGATTTAACGCT 42062 30 100.0 36 .............................. AGAAATTTTATACACATAAGTTCATTCACTTCAAAT 42128 30 100.0 36 .............................. ACTAGTGAAACTGCCATCAATACTTACATTGAATTC 42194 30 100.0 36 .............................. TTAAATAATTATTAGAATTAGATATACTACTAGTTG 42260 30 100.0 36 .............................. AAATTATAAGCATATACAAGTGTATTTGTTTTTCCT 42326 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 100.0 36 GTTGAAGATTAACATTATATGTTTTGAAAT # Left flank : AGGGTGTTGAAACACAAGATGTTTCCTATATATCTACTTTGGATAGCTTGTTCTTAAAAGATTGTGTTAATATAAAAAAATTAATCAAACCTAATGGATTTAGACCTGTTAAAGCAGCACCAAGCTGTGGTTTAGAAAAAATGCGAGAATATGTATACCAAGAGTTTTTACCATATGCTTTGGAACCTAAGTTTAATACATATGATACTAGAAAATTTATTTGTACTAATAAGTCTATAGAGGTTAATGATAAAGAATCTATTATCTATAGTATTAATGATAAAAATCTATTTTTCTATTAAAAAGTAACAAGTATACAAATAATTTACCAGGCGATTTTAATAAGTAATTTGTAGCGAAATATCTATTTTATGAGCTTTTACTATTTTAAGTATTATTGTATTTAATTTTATAAAATAGCTGGTAAAATAATATGCAAATGTAGGTGAATGGCTGGATTAAAAGATATTAATATATATAGAAATGACTTATTTACTTTG # Right flank : TATAGATACAGTCCAACTAATTTAATAAAAATAAAAAAGGAAGAAGAGAATTTATGTATTTTGAAAATATAAAAATTATAGATATATCTACGTTATTAAAAGAGCCATCTGATATATATTCTCATACTAAGAGTGACATTTTAGAATATGAAACTCTAGCTGAGCATAATGAGCGGTGCATAAAATATTTTTATAAGATAGTAGATGTAAAAAATCTAGATAGTGTATTTAATAATTTTGAACAAAGACTATTAAAAGGCTGCTCAAGTAAATGCATTAATTTGTGGAAGGAAATTGTATTAAATACTGTATTTTTCCACGATGTAGGTAAGAGTAATCCTGGTTTTCAAAAAGAAAAAATGAAAAATGAAAAGTATAAAAATATAAAAGTAAATAATTCTAATCATTCCCGTGCATCAGGTATAGTTTTCTTTAATCATTATTATAATGAAGTATTTGCTGTTAATAATGATGAAGCTAAGGTGTTATTTGTTTTCCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGATTAACATTATATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 9893-10069 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWR010000026.1 Clostridium saccharobutylicum strain DJ002 NODE_26_length_51622_cov_27.490581, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ============================== ================== 9893 39 100.0 30 ....................................... AGGATTGGACATTTAGCGATTGTTATAAAT 9962 39 97.4 30 ..G.................................... GAGAATATGCATTTGTTAAGTGCGTTAATT 10031 39 94.9 0 .......C.........................G..... | ========== ====== ====== ====== ======================================= ============================== ================== 3 39 97.4 30 TAAAAAGTATAACAATACCAGATAGTGTAACAAATATAG # Left flank : GAATAATATATTCTGAAAGTTATGTTACAGTGCTATTGGGTAAAAACGAGAATAAGGGGAATGAATGATGATAAAATTGAAATTAACAAAAGTAATGGCAAGTTCATTAATACTAGCTTCAGTATTTGCATTAAATCCAATAGGAGCAAGTGCAGAATGGAAAAAAGATAGTAAGGGGTGGTGGTATACAGAAGGTGATTCGTGGGCTACAGGTTTGAGAGAGATTAACGGAAAGCAGTACTATTTTGACAAAACAGGATACATGGTCGAGGATAAAATTGTTGATAACTTGTATTTTGACAGTAATGGAGCAAGGACAGAATATATATGTGCTGACGGATTTGCAGTTGATAAATTAACTGGTACAATAATAAAATTTAGTAGACAAGATGCTCGGGTGAGGCCAGGCGAACCAGGTATTTCAGTAGTTATACCAAGAGAAATTGGTGGTGTTGAGATAAAAGGTATAGGAGGTAAGGCTTTTAAGATTTGTACTAACA # Right flank : GGAGATTATGCATTTTCGGACTGCAATAATGCTATTTTTTATGTTGGAAATGAGAAAACAAAACAACTTATTCTTAATTCAAATTCAAAGATAGATAGTAATAAAATAATAATAAAATCACAAATAATATAATAATTAAAGGTAAGCGTCAAAAATTTAGTAAATAGAATACAAGCACTTCCTTTGATAAAATATCGAAATATTCTATTTAAAAGGAAATTTTAGGAGATCCGTTTGTAGAGAGGGACATTTAGATTAAATGAAAATAGTAAATACATAATGTTCTTAAAAGGTGTGACAATTGGAGTTTGTACGTGTTGCACAAATAGAAAATTGAATCACTTTAAAATATAGGTAGGCTTTGTCAAAGTCTATCTTATTTTTTGTAAAAATATAGATAGAAAATAAAAATTATATGAGAGGAAATATTTTTATTTACGTTATATAATGTGTAAGAGCTTTTACGAAACTAATTGATTGGAGAAATTTTAATGAGGTGT # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAAAAGTATAACAATACCAGATAGTGTAACAAATATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 10122-8692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWR010000051.1 Clostridium saccharobutylicum strain DJ002 NODE_51_length_20513_cov_24.357408, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 10121 28 100.0 36 ............................ TTGATGACGCTTGGTCTTCTGTCCAAAATAAAACCA 10057 28 100.0 37 ............................ CTATAAAGGGGGAAACTAAATGAAAAATATAACACGA 9992 28 100.0 36 ............................ AAATAGGTTGGTCGATAAATGAATCAACTGTAAGCA 9928 28 100.0 36 ............................ GTGGAAAGAAGTATACTGAATTGCTTCATAAATCAT 9864 28 100.0 35 ............................ TTCAACGATAATATTTTTTTAGCTAATTCAGTTTC 9801 28 100.0 36 ............................ TTATTTCCATACACTTGATATGCTGTAGGTTCATCA 9737 28 100.0 35 ............................ TCGATTTGCATTTGACTATCTGATGTTGCAAATGT 9674 28 100.0 36 ............................ AATGATAACATTAATATGAATTTTATTAATGAAGAA 9610 28 100.0 36 ............................ GAGATAAGAGATTCTGCTTTATTCAATGGATTAAAC 9546 28 100.0 36 ............................ ACTAATTCATCAAGGCTAATATTATACACTTCACAA 9482 28 100.0 35 ............................ TAGCTCTATAGCGTTTTGCATATCATTACTAATTG 9419 28 100.0 36 ............................ AGAACTTGTCCTGGAACATTTGTTGCTTGCAAGTCT 9355 28 100.0 36 ............................ TGCAATAACATTAACTTGATTCCATTTATCCCCCCA 9291 28 100.0 35 ............................ AAGCTTCTATATATTCATCATTTTCACTCTGAAGC 9228 28 100.0 35 ............................ CAATATACACCTTGAGCATTAACACTTCCCGACAA 9165 28 100.0 35 ............................ CATTAAATAAAGCATCATACTTAGCTTTAACTTCA 9102 28 100.0 36 ............................ GTACGTTTTTCCAATGTTGTTGTAAGATTTAATATT 9038 28 96.4 36 .......A.................... GGAGAAGTTATGGATGTAATTGAAAGAGGAAGCACA 8974 28 96.4 36 .......A.................... AATAAAAGAAAAGCTCCAATTGGTAATTCGTTAAAA 8910 28 96.4 36 .......A.................... ACTATTACATCTAGTGCAACAAATATTCTGGCTTCA 8846 28 96.4 36 .......A.................... TTAAAGAAAAGTAAAATATGTAAAGATTATCTTTAT 8782 28 96.4 35 .......A.................... ACTAAAAAGGTTAAAAGTGTTAAAGAGCCTATACG 8719 28 67.9 0 .......A......TATT...A.CG..G | ========== ====== ====== ====== ============================ ===================================== ================== 23 28 97.8 36 GTTTTATCTTAACTAGAGGAATGTAAAT # Left flank : TAAACATTTGATAAAAGATGAAAAATATAAACCGTTGAAAGCTTGGTGGTAATATGTTTGTAATAGTAACTTACGATGTTAATGAAAAAAGAGTAAACAGAGTTAGGAAAGTATTAAAAAAGTATATAACATGGTGTCAAAATTCAGTTTTTGAAGGAGAAATAACTGAAGGAAAATTAACAAAATGTATGGCAGAAGTTAAAAAATATCTAATAGATTCAGAAGATTCACTATATATTTATAGGATTCCTTATAGTAAAAATATAAAGAAAGATGTTATAGGCGTTGAAAAGAATTTAGATGAATTATTTTTATAATTGCATTAAGCGATTTTTAGTATTAAATCTATCTCAAGGCAGTTGTTAACAACGGTGTAATCAATTTTATTTAATTATTAAAAATCACTACTATAGCTTTACTGCAAAAGTTTATGCTATAATATAAAAAGATATAAGCTAAGATGGCTAATATAAAGGGTTTAAGTTATGTGTTTTTTCGGG # Right flank : CTATTTTTTCCTTCCTTAATAAGGTTCTCCATTGTGCATCTATTACAATAAAACGTTATTACAGATTCTAGACGGATGATCATATTTGTTACAACAAAAGTATAATTTATACACATTTGACCTTCTTTGTTTTCTAATTTCACAACAACTCTGCGATTTTTAGTTAATTTCTTTGCGTTATACATGAATTTGCAATATATGATATTATGTTAATACATGTTCCTTTTTTATAATTATTCCATAATTAATAAATTATTGATAATATTTATACAATATTGCATTTGCTTTTAGTCTTATGGTATATTTAGCAGCATGTTCTTCAGAAGCCTTGTAAAATTCTGGTAGAGAAAAACCGCTATTCCCATGAATGTATAGTCTATATAACTATATTTATTTGAGTATATTTTTAGTAATGGATCAATAAAAGCCACTGTTGTTCTTAATTTATAAACATTCCCAGATCTTAATTATGCTTTTAACAAATCACCTGCTAATCCATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTAGAGGAATGTAAAT # Alternate repeat : GTTTTATATTAACTAGAGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //