Array 1 50649-49753 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYA01000004.1 Limosilactobacillus fermentum strain AF16-22LB AF16-22LB.Scaf4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 50648 36 100.0 30 .................................... AAGACGTGGCCGAAGGCGGGGCAATTCAAT 50582 36 100.0 31 .................................... CATGGATTGTGCCATTGGTTATTAACCTCCT 50515 36 100.0 30 .................................... ACACGTTCGCTAATGACACCGTAGACTTGC 50449 36 100.0 30 .................................... CTTAAACAATTCAACGTTTAGATCAAACTG 50383 36 100.0 30 .................................... CCATGACTGTGCATTGCTTGCAGAACATGC 50317 36 100.0 30 .................................... GAGGCCACCAGCGATGACGGCACGGTAACA 50251 36 100.0 30 .................................... TTAATCGTTGAAAGCATCAACCAGGCCGAC 50185 36 100.0 30 .................................... CACTAAGGCGTTATATAAGTAGCTAGGGTT 50119 36 100.0 30 .................................... GCCAAAATGGGTTTGGCTCCTCTTACACGT 50053 36 100.0 30 .................................... CCTAACGTCATCTACGTTGGACAAACATTG 49987 36 100.0 30 .................................... CCTAACGTCATCTACGTTGGACAAACATTG 49921 36 100.0 30 .................................... CCTAACGTCATCTACGTTGGACAAACATTG 49855 36 100.0 30 .................................... GTTAGTCATTTTGAATCACCTCCTTTCACG 49789 36 88.9 0 ............................TT....TA | A [49757] ========== ====== ====== ====== ==================================== =============================== ================== 14 36 99.2 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGTTACCAAACGGCACTTGATAAGATGATTGTTAAAAATCTTAGCATTCAGAAGCGAGATCGGATGAATGACCTCGCTCGTGGGGTGTTCTCAGAGATGCAAGATTCTTTGTTTGAATTTGATTTGCCCTTGGAAGTCAGGTATGACGAGAGTCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCAAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTAGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGATAAAACAACG # Right flank : TAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCCTTTTTGAAGTGATGAGGGGAAGGAAAATGTCTTCACGTTGGTAATCTAACGGGAACTTTGGTGGGCGATATGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAAATGATTCGCCCCGAACTGCGCCGGATCGGCAAGGTGGGGGACGCTGTTAACCTGTTGGCCAGCCCCGTACGCCTGCAACGAATGGGACGGATGATGGCGAAGGCGAAAAGGCCCATTCACTCGCGGCGGGTGATCAAACAAGACGTTTGGATTGAACGCCCTGACCACAGCAAGCTTCGGTTGGCCATTTTCCGGGCCAAACAAGTCGTGACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTATGCCTTGGAAAGCGCCGAAAATACATTGGTTTATGCTGAACAATTGGTGGCAGACGGGCGGTCCGTGATGGTGGCGCCGGATTA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 22277-20579 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYA01000022.1 Limosilactobacillus fermentum strain AF16-22LB AF16-22LB.Scaf22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 22276 36 100.0 35 .................................... ATCTTTAGATTATTGACGTTTTCATTGTGCTTAGC 22205 36 100.0 36 .................................... TTACTCAAGACCATCGCTATTTCCCTACATACAGGT 22133 36 100.0 38 .................................... TTACGCTCATTAGTAATTGCCTCCGTTGTATTGGTTTT 22059 36 100.0 38 .................................... ATGACTGGTGCGAACGGTGACTTGTCACGCAAGCTAAT 21985 36 100.0 39 .................................... TGATAGTGATGGATTGACTAGCTTGCAAGTGAGCGCCGT 21910 36 100.0 36 .................................... TGCCTTCGGGAATAAATGTGTCCCCGGCCGTCTTAC 21838 36 100.0 35 .................................... GTATATTCCTTGACAAAATGATATGAATCATTCGA 21767 36 100.0 34 .................................... AGCTTTGCTTTCAAATTTTGCTTGATTAAATTCA 21697 36 100.0 35 .................................... TGATTTGCATTTTAAATTCATTTTTCATTAACATG 21626 36 100.0 36 .................................... ACCATTTTAAATTGATAGCCTAACCGGCCGTGAGTA 21554 36 100.0 35 .................................... GAGTTCTACAACCGCCTTAGAACTTAACACCTCGT 21483 36 100.0 36 .................................... TAGGTCGTCACGGTTTATGATCTCCCGGTAACCGTC 21411 36 100.0 36 .................................... TAGGTCGTCACGGTTTATGATCTCCCGGTAACCGTC 21339 36 100.0 37 .................................... TTTATCAGATTCCAGTTGAATACATCTACATTGGTTC 21266 36 100.0 37 .................................... AGTGACGAAATTAGATTGCATGGTTAATATCCTCCTT 21193 36 100.0 35 .................................... GCTTACACCGTCGTTATCCTTTTTCATTACTTGCA 21122 36 100.0 36 .................................... AGATTGCATGATTGAAACTCCTTTTCTTTGATTGTC 21050 36 100.0 38 .................................... TCCCACACCTTGCCCTCTGGTGCCGTTGCCTTGATCCT 20976 36 100.0 36 .................................... TGACCCGGTTAATAATCAGTTGCTTCTTGCTTACCT 20904 36 100.0 36 .................................... AACCGGCTTATCAGGCAGGTGTTGCCTAGCCAGTTC 20832 36 100.0 39 .................................... GCATGTTTGAATCCGTTTGCGTAATAATCCGTATTCATG 20757 36 100.0 34 .................................... CAGCGCCTTGATACCATCCACTGTGGCTGGTTTT 20687 36 94.4 37 ..........A.......T................. TATCGGTTGCTTGCTCGTAAATTTCAGCAAACCAATC 20614 36 75.0 0 ..........A.......TT......G....TGGTA | ========== ====== ====== ====== ==================================== ======================================= ================== 24 36 98.7 36 GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Left flank : AAACAGTTTTACGAACGGAATTATGCACCAACCTTCCTTTCTGCTTTTCCCTCTAAATACATTCAGGGGAATTACAAAGCACCCGTATACCTCGGAGCAGGGAGCGGTCTATGGAGCAAAGTTGACCATCAACATGTTGATATTGAAGGGATTCGACGTCAAACTCCAAGAAAAATGAAGATGAAGTTTAATGGTGCCCTGAAGCTAACCAAGAGCCGGATAGTACGCTATAAGACTCCTAAAAAGGATGGCTCATTTGAACGACACGTTCTCATTATTAATAACGAAAATCTCTACGAAATGGGAAAATGTGGGTTCAAAATCAAGGAATTGTAATTTCAATTCTGAACTAGTTAAGTTATAATATATAGAGTTAATATTCGAAATTGACAATGTCCAGAAAAAGGGCTAGAGAGGCTTGAATGAGCACCTACCTGGTCGAATTGTGGGCATCAAAATGTCAAGTTATCCTTGATTTAGCAAGAAAGTTAGCAGGATCG # Right flank : AAAAGCGAGAGCGTGTATCGAAATCCTTGGATTTCAATACACGCTCTCTTTAGATTTAGGGGCCAAGAAAGCTCGTTGCAGTAGACTAGATATATAATTTATAATTGACGCATAGGTTATATTCGAGAGAAAGAAATTAACACTAAATGAAATAGTAGGATGTTGATTTATCGGCAGGTCCTTACTTCGGGAGGGGTAAAGGGTGAAGAATATAGTTTATGTGGAGAATGAATGTTTTGTTGGTGTCACTAAAGAAGGGTTAAAATTTTCAAATATCAAGACGAAGGAAAAGAAGTATCTGACCTTTGATGATATCGGTACGTTGGTATTTAATAATAGAAAGTGTTATCTATCGGAGCGGGTGATTGAATATTGTGTCCTTAATCACATTGGAATTTTATTTTGTGACCGAAGCCACTCCCCTTTAGAAATGATCGAGACTACCTACAATCAGGAACACCGCTATGAACGCTTGAAAAAGCAACTAACCTTAACTAGTA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //