Array 1 1326099-1324279 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029337.1 Helicobacter cinaedi isolate gHKSHhc_BC_20160917 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1326098 36 100.0 30 .................................... GAAAATTTTTCTTATAAAGAGTATATTTCC 1326032 36 100.0 30 .................................... TATGCTGGTGGACTTGATACAACTACGTCT 1325966 36 100.0 30 .................................... CCTCTGCTGTTATAGACGCCGGTAACATTC 1325900 36 100.0 30 .................................... AACTTTGAGCTTGTCCCTGAGTCAAAAGTT 1325834 36 100.0 30 .................................... ATAAGTGTAGCCACATCTTATTCTTTCTAT 1325768 36 100.0 30 .................................... GGCGTGTAGAAAGGTAACTTTTCAGTGATT 1325702 36 100.0 30 .................................... CTCGTTTGGTTCTGGGTCTCTCTTTTCTCT 1325636 36 100.0 30 .................................... TTCTGCTATCTGACACCATAGCGGTCAGTA 1325570 36 100.0 30 .................................... AGTATATTGCTCCCGCGAAAGAATTTTTAA 1325504 36 100.0 30 .................................... ATCGCCACGCTGTAATCGTTATCTGCCCCT 1325438 36 100.0 30 .................................... GCAGAAAACGTCGATTTTTTATTCGCAGAC 1325372 36 100.0 30 .................................... CTTGGACACTCACATGCATACATCATATTT 1325306 36 100.0 30 .................................... AGTATATTGCTCCCGCGAAAGAATTTTTAA 1325240 36 100.0 30 .................................... TCAAATTCAAGGCATATTGTGCCGGTAGCA 1325174 36 100.0 30 .................................... ATATTTCCTTTTATGCTTGTGTATTCAATA 1325108 36 100.0 30 .................................... CGGAGCTCAGTGGTATCGGTATGCAGGAAG 1325042 36 100.0 31 .................................... ACCTTTTGCTCCCATATATCCGAGAACACCA 1324975 36 100.0 30 .................................... CAGGCATTTGATGTTTCCGTTTTCTCGTTG 1324909 36 100.0 30 .................................... TGATAGCACACTAGATTCTGCTAAGTGCTA 1324843 36 100.0 30 .................................... GGTATGGATTCTATAATGACGACTTATTAT 1324777 36 100.0 30 .................................... TAGTCAAACATGTCAAGCCCCCTCTTTTGC 1324711 36 100.0 30 .................................... CCCGGAGCTTAGCGGAATCGGAATGCAAGA 1324645 36 100.0 30 .................................... GATTGCTCGTGCGACACTGCATAATTTTAG 1324579 36 100.0 30 .................................... TCCCCAGCGATGTTCTTCCATATCTTTCTC 1324513 36 100.0 30 .................................... GTCTGCCGCGAAAATATGCAAGGAAGCGAG 1324447 36 100.0 30 .................................... CCATTGCTTCTATTATCATATATGCCTTGT 1324381 36 100.0 30 .................................... CCGGCAAGGTTGAAAACAATGCTGGAGGCA G [1324368] 1324314 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 100.0 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGCTGTAAAAAAGGTGCTTCCAACTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAAAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCG # Right flank : GTCCGCATTGCTTTTCTTTTGAAATAAGTGATTCTAGCATATAGAAGTTTAAGAACTGTCTCTTATACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCGTCAGATGTGTATAAGAGACAGGGTAAAAGTAGTCTTATTACATTATTTGGTTTTGTTGTGTATCGCAAAGATTAGGAGGGGGTAAGAATATGATAAAAAAGGAAAAAAATGCTGTATCAAAATGTAATTGTAGGGGCAGGGTTAGCAGGGCTAACATTAGCAGAGAGATTGGCAAATATAAAGGGCGAACAAGTCTTGATTATTGATAGTAGGGAACATATAGGCGGAAATGTGTATGATTATGATGAAAATGGCATTTTGGTGCATAAATATGGCACACATATCTTTCATACAAATGATAAGGGAGTGTGGGATTATCTTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1672669-1672967 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029337.1 Helicobacter cinaedi isolate gHKSHhc_BC_20160917 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1672669 36 100.0 30 .................................... ATAAAATGTTTTTTTTTGTTTGTGGGATTT 1672735 36 100.0 30 .................................... ACTTGCGGACGAGATTTCATAGAATCTTTG 1672801 36 100.0 30 .................................... TTTTAAAATTTTAAGCCCTTGAGATACGCG 1672867 36 100.0 30 .................................... AGCTCCTCTTTTGAAGCATTCTCATTTTTA 1672933 34 86.1 0 ...................--.A.........T.T. | T [1672962] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : ATCTATACAAGCCCATACAATACAAAGCCATTATGCTAATTTTGCCTAGCCACCTAGCTTAAGATCTCTTAAAACCTTTAGACTGCCCCTCTTAACACATCTCATCTTTTAAAGCTTACGATTTTAGAATCTTGCCATACTTTTAAAACCTTGTCATACTGAGACTTTTGCCGAAGTATCTATATTCTAAAATTCTTATAAAACCCTCATATACGAATCCACCAAACCCAAAAACTCTCATTTATAATTTTTATTAGATATTATAAAAATGTGTAAAAGAATAAAGCCTAAAATAAGATTCTCTATAAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTCA # Right flank : CACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAACACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //