Array 1 66850-65844 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRLV01000171.1 Escherichia coli strain 703420 ctg7180000010662, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66849 29 100.0 32 ............................. TCTATTCACCAAAAGAGGGTGATATTGTTATT 66788 29 100.0 32 ............................. ACGTCGGCACGAATTTTACCTGCTATTCGTCA 66727 29 100.0 32 ............................. CGTGTCTCGCAACAAATAGCGGGCGTCCGTGC 66666 29 100.0 32 ............................. CCGCACCCGTCCTCGTCGGCCAGCGTCCACGC 66605 29 100.0 32 ............................. CCGCGTCTCTATTCCGATTTGCCGCACTGCGT 66544 29 100.0 32 ............................. ATCGACATGCAGCGCGAACGGCTGCCCCTCAC 66483 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 66422 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 66361 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 66300 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 66239 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 66178 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 66117 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 66055 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 65994 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 65933 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 65872 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83536-82348 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRLV01000171.1 Escherichia coli strain 703420 ctg7180000010662, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83535 29 100.0 32 ............................. GCAAACAAAACGGCCACGTAAAGTGGAATGAC 83474 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA 83413 29 96.6 32 ............T................ ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 83352 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 83291 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 83230 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 83169 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 83108 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 83047 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 82986 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 82925 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 82864 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 82803 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 82742 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 82681 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 82620 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 82559 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 82498 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 82437 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 82376 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //