Array 1 218960-217709 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTW02000002.1 Salmonella enterica subsp. enterica serovar Takoradi strain HIY0263 NODE_2_length_740623_cov_53.811094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218959 29 100.0 32 ............................. GTCGTTTTATGTTTTGAGCCATCGTTACACTT 218898 29 100.0 32 ............................. ATCCCCGGCGATAACGGGCGCGTAGTCAGCAA 218837 29 100.0 32 ............................. ACCAGGCGGTAGCGCTGAAGAACGCCGCTGAT 218776 29 100.0 32 ............................. ACCCGTATCCGAGGCCAACGCGGCTACGAAAA 218715 29 100.0 32 ............................. GTAATCGCAACCAGAGCGAAAGCTCCATCGCA 218654 29 100.0 32 ............................. CAGACGAGGAACGCCTCACTGCATCCGTTGGA 218593 29 100.0 32 ............................. TCACAGCAAGCCAACTCCTAAGAAATCCTAAG 218532 29 100.0 32 ............................. GTGGTCTAGGATTTGTCGATACTGCTGATCCC 218471 29 100.0 32 ............................. CGTGAACATACGGCAAAGGCTGGATTCACAAG 218410 29 100.0 32 ............................. CCGCTCAACTCTTGCCGCATATCGTTGAGCTG 218349 29 100.0 32 ............................. GGTAACTCGCAATATAGGTGGCGCCTCGCCCA 218288 29 100.0 32 ............................. GATGATCTGGTGGCCCTCCCTCAGCGATGGCA 218227 29 100.0 32 ............................. GGGGGCGGCGGGCGCCGTGGGGGCAGCTATCG 218166 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 218104 29 100.0 32 ............................. TGAAATCCATCCGCTACGAACCTGAAGAAAAA 218043 29 100.0 32 ............................. GGCCAGTAATAAAAGAGGTGGTAGTAACGATG 217982 29 100.0 32 ............................. CCGAGTTCGCGCAGTGTTTCTGTGCAGGTATT 217921 29 100.0 32 ............................. ACCGCAATAAAAATTTACACCGCCACACCGGC 217860 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 217799 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 217738 29 96.6 0 A............................ | A [217711] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGATTGTGGTCACAGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTATCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAATCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236136-235131 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTW02000002.1 Salmonella enterica subsp. enterica serovar Takoradi strain HIY0263 NODE_2_length_740623_cov_53.811094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 236135 29 100.0 32 ............................. GCGTTATTCATTGCATCAATAGCATATTCCCG 236074 29 100.0 32 ............................. TGAGTGCAACATTCATTGTTTCCTCGGTCAGG 236013 29 100.0 32 ............................. ATCAGTCAGGGGAAACAAATTGGGGAGTCATA 235952 29 100.0 32 ............................. CGTTAGCGGTTGAGCGTGACACCCTGGCGGCG 235891 29 100.0 32 ............................. TAAATGATATTGATGTAATGACGCGACTTTGC 235830 29 100.0 33 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTATG 235768 29 100.0 32 ............................. AGTTTGCTATTAACAACAATGATTGTACTTGC 235707 29 100.0 32 ............................. CCTTTGGGGGCGCCGCGAATTTTCAGCAGAAT 235646 29 100.0 32 ............................. ATCGCGCCCTCATCTCCCCAGATTTTTGATAC 235585 29 100.0 32 ............................. GAAATGACTCAATCTCAGCAAACCATGCCGGC 235524 29 100.0 32 ............................. CCATTTTGTTTTCCCAGCCCTCTTCATCCGGT 235463 29 100.0 32 ............................. AACAAACTAATGTTTGTTTTTACCAGGTCGTT 235402 29 100.0 32 ............................. GTCGGGTTGCGATATATCCCGCTTTCTGGCCG 235341 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 235280 29 96.6 32 ...........................T. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 235219 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 235158 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //