Array 1 1015304-1018503 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018888.1 Amylolactobacillus amylophilus DSM 20533 = JCM 1125 strain DSM 20533 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1015304 28 100.0 33 ............................ TATTGCAAAGACCGCTACTGAAGCGCGGCCGGT 1015365 28 100.0 33 ............................ TGTTGTAAAAGCTAACGCCGTTAATAGGTTAGA 1015426 28 100.0 33 ............................ CGGCGCCGGCTACTATGTATACTTTGAACCGTT 1015487 28 100.0 33 ............................ CGGTAGACCAAGTTATTATTTTGGTGAAAAAGG 1015548 28 100.0 33 ............................ CGCGGTAGGCCGTGCTAGGTATGACAACGGCGC 1015609 28 100.0 33 ............................ TCTCATAGTGCCCGTTTTTCTTATATATTGCTT 1015670 28 100.0 33 ............................ TCTCCACCACTCGCTTAAACTTCGTCTCATCAC 1015731 28 100.0 33 ............................ CACTAAAAGCAGTCCCGGTACCATAAGATATTG 1015792 28 100.0 33 ............................ TTGTATTATATAAATATAGAAGAGAGCAGGAGA 1015853 28 100.0 33 ............................ CCATTCCTCCAAAACGAAAAATGGTCGGAGTTC 1015914 28 100.0 33 ............................ TACATGGTTTTCACAAACTCATACATTGTTCTC 1015975 28 100.0 33 ............................ TATGTTACGCCATCATCAATATCATCAGGGAAC 1016036 28 100.0 33 ............................ TAGTAAGGGCATCGTCAGAGCTCGCAAAGATGG 1016097 28 100.0 33 ............................ TCTTTTTAGCCAATTGCACTTGCGTAATGCGTT 1016158 28 100.0 33 ............................ TCAACATTAACCTTAATCTTTGTCATTTAAAGC 1016219 28 100.0 33 ............................ CACTCAGGAGTACCTAATAAAACAGATTAGTCC 1016280 28 100.0 33 ............................ TTATCCACGGGCGTTGCGTTGTCATCAGGATTA 1016341 28 100.0 33 ............................ CAGGCTTGTTATTTAAGGGGGTTGGTTGGCTAT 1016402 28 100.0 33 ............................ TACTGATTTGTCTTGTGGCGTTATCAGCGTTGC 1016463 28 100.0 33 ............................ TTTATCAAAGAGGTACCCACAAAGAGAGGATGA 1016524 28 100.0 33 ............................ TTAAAAAGGCAAACCTCAATCTGGAGGTTAAAA 1016585 28 100.0 33 ............................ TAATTTCTGTCAAACAATTTATATTAGTTGTTG 1016646 28 100.0 33 ............................ TTCATGAGGGTGTAGACCGTTCGACAGTCAATG 1016707 28 100.0 33 ............................ TCATTTCATCTTGGCAGGCTCTGCAGGCTTGAT 1016768 28 100.0 33 ............................ TTGTCTTCCCCCCTTGGCGTAATTTTGAAGTTT 1016829 28 100.0 33 ............................ TGCCGCATCGACATCTACCTTGTTTTGCGTAAT 1016890 28 100.0 33 ............................ CACTAGTGGTTCTTGTAATGGTAGCTTGACCGA 1016951 28 100.0 33 ............................ TAAATAATTTCCTCTACTCTATCAGACGTCTGT 1017012 28 100.0 33 ............................ CCATCGCTTCCTATTATACTTTTAACACCATCG 1017073 28 100.0 33 ............................ TGATACATTGAACCCGTCTGATTTAATGAAACA 1017134 28 100.0 33 ............................ CATGGTCGTTTTAACGGCGGACGCCGTTATCGA 1017195 28 100.0 33 ............................ TAATTCCTTTAAATCGTTATAGCCCGTGTAGTC 1017256 28 100.0 33 ............................ TTGCTAATCCATGGCATATCAATACCGACAATT 1017317 28 100.0 33 ............................ CTAGTATCTAAACCATAGTAGTTTAGTGTTTTC 1017378 28 100.0 33 ............................ TAGATATTGTAAGAGAGATAGAGAGAGGGAGAA 1017439 28 100.0 33 ............................ CGTAGCTTAAAACCTGCTGAATAGTGCCAGACC 1017500 28 100.0 33 ............................ TCAAGTTAAAAGCTGATGGTTCAAAGGTGGATA 1017561 28 100.0 33 ............................ TCCGCGCAATGATTTAACAGGTGCAGAGGTTAA 1017622 28 100.0 33 ............................ TCATACGGGCCGGCGTGTGTGTAGTCGCGCGGG 1017683 28 100.0 33 ............................ TCATGATAATTCAAAAGTTTTTGAAATGTTTAC 1017744 28 100.0 33 ............................ CTCCAACTAAAAATTGGATTATCGGAGTTAAAA 1017805 28 100.0 33 ............................ TCAGGGGTCTAGCAGCAAAGCCACGGCTCAGTA 1017866 28 100.0 33 ............................ TCGCCAGAGCATTTCTAATTTTCGTGTTGGCAG 1017927 28 100.0 33 ............................ CAGCAAGCAAGGCTATTATCGACTATGCGTTTA 1017988 28 100.0 33 ............................ TTACAACCGCTTTTACGGCATTTATGCATAATC 1018049 28 100.0 33 ............................ TAAGTGTTCGATAAATTTACCTAGATTTTCAAA 1018110 28 100.0 33 ............................ TTGTGCTAGGCTGGTTGCAGATATTTGTAAGCG 1018171 28 100.0 33 ............................ TACCGCCCACTTGATGATGTGATATGCCTTGTC 1018232 28 100.0 33 ............................ TCCACTCAACACCACCAATTCTGCCTTGCACGA 1018293 28 100.0 33 ............................ TATTCATTATCTTGCCATGTGTAATATGCATCA 1018354 28 100.0 33 ............................ TAGCACAGTATAAATAATTAGGAGGTCATTCAA 1018415 28 89.3 33 .........................CTG ATCAAGTTGAGTGATAAATTTGCGGTTTTCAAT 1018476 28 96.4 0 ..........T................. | ========== ====== ====== ====== ============================ ================================= ================== 53 28 99.7 33 GTTTTCCCCGCACAGGCGGGGGTGATCC # Left flank : TGATACTGATAAGATTATTGCTATTGGTATGGTCAAGATTAATCACGGTGTTGCTGACAATCCAAAACAAATTCTAATTAAAATTGACGAGCCACTCTCAGATGAAATAATTAAATTAACTGGATATACAAACAAATGGTTGGAGACTGAAGGAGTTGATATTGTTAGCGCATTAAGTAGATTTGTAGATACTGTTGAAAATTTACCAATTATCGGATTCAATGTAAACTTCGATATCAATTTTATCAACAAAAATTTGATTGAAAATGGTATGTTGAAAGTAGAAAATGAAATTACTGATTTGAGAACAGTGGTGAAGAAAAATGAACTGTTTTTGAATAATTATCGGTTAGAGACAGTTCTGGCAAAATATGGTATTGAAAATATTAACCCACATCATGCGGAATCAGATGCGCTGGCAACGGCAAAGCTTGCGGATCAACTCATAAAAAATAGTTTACTATATTTTTAGAATGTTGATTTATAAGGGATCTTTTAGT # Right flank : CTTGGTGCCGGAATATTTCAAATCTGATTTTTTAGTTCCCTGTATATACGGGGTGATTCATACACCGATAGCTTATATCAGTCAGCAATTACAACTTATGAACGTTCTAAGCATGAAGTTCAGTCCTGGCAAGTTTAATTAGTCAAAGAAATATTTGCGATTATACTTTAATATACAGTCATTATGCATATTAGGGTATTTGTTCTCACTAGGAAATGTGTATTAATGCTATAATACTAGGGTGGTTTTCCCCGCATACGCGGGTGTGATCCTGTTATGTTTGCTAATTTAATACATATCCAGGTTGTATTCCCCGCATTTGCGGGTTTTTTTGTTTTCCCACTAATCCAACACTTCCCCCAATTCCAACGACCAAACAAAAAAACACTAATCTAACCGATTAGTGCCCCAAAGTCCTCAAAATATTTAGCAAGGTGAAAATTTTAACAACGTGACGTTAAGCCGCTTTCGTCGCTGACACAAGAAGCATCATTGGTCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //