Array 1 5963577-5958647 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031320.1 Streptomyces armeniacus strain ATCC 15676 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 5963576 29 100.0 32 ............................. TGTTGACCAACGCAGTGCGCCACTGTGCATGC 5963515 29 100.0 32 ............................. CCCAAGGGGGTTGACACGGTTCGTGTCAGCGG 5963454 29 96.6 32 ............................T CAGGTTTGGGGTGCAAGGGTCAGAACAGTGAC 5963393 29 100.0 32 ............................. ACGACATCACGAACTCATGCAGCATTCCGAAA 5963332 29 100.0 32 ............................. CCTCCGAAAGGCCGCCCGGCGACCCGGGCGGC 5963271 29 100.0 32 ............................. GTGTGCCCGGCCGCCGTTGTCAGAATCCAGCC 5963210 29 100.0 32 ............................. GTGCTGGACCGGGACGACGCGAAGGCCGCGAA 5963149 29 100.0 32 ............................. ACCGCGCCACCGAGGAGGTGCTGCAGCATCTG 5963088 29 100.0 32 ............................. TGATCACACGCGGCCGGATGCTCATGCCCGGC 5963027 29 96.6 32 ............................T GGCTCTACGAAAATTCCGGGGCTGACTCTGCT 5962966 29 100.0 32 ............................. AGGCGCCCGCTCGCTCCTGCTCGGCCCCATGG 5962905 29 100.0 32 ............................. CACGCCGCCGGGACGGTCGTCTGGGCGGCGAT 5962844 29 100.0 32 ............................. GTGCCCCGCCCCCTTCGTCCGTCGCTGAACAT 5962783 29 100.0 32 ............................. CGATGTCCCGTCACCCGTGGGGCGGGGCACGG 5962722 29 100.0 32 ............................. GTGGTGTTGCACACCGAGCTGCCCCAGGAGGG 5962661 29 100.0 32 ............................. GTGCTCGCCGCGGCCGGAGGCCCTCGCCACGA 5962600 29 100.0 32 ............................. CGTTCCCCAGTTGCCGTCCCGGCGGTGCGGAG 5962539 29 100.0 32 ............................. CGCGGTCTATGGCCGCGCGCTGTCACGGCAAC 5962478 29 100.0 32 ............................. TGCCCTCTTCCACCGTCCGGATCCTCGTCTCC 5962417 29 100.0 32 ............................. CAGTCCAGGCCGTCCGTGATGTGGCCCACCGA 5962356 29 100.0 32 ............................. AGGCCAAGCTCGCCAGCTGGTCGACTCCGCCG 5962295 29 100.0 32 ............................. GAGCGCAGTTTCGGCGACCCGGACCAGAACTG 5962234 29 100.0 32 ............................. GTCCGGCGGCGTCACAGGCATCGACGGCAGTC 5962173 29 100.0 32 ............................. AGCGCGGTGCGCTTCCGCGACTTCGTGACCGA 5962112 29 100.0 32 ............................. GGGCGACCAGATGATCAGCGTCCGAGCCGTCT 5962051 29 100.0 32 ............................. GACCACCGCCTCAGGGTCGGCTGGTGGTAGCG 5961990 29 100.0 32 ............................. GCCTCCACGACGTCCAACCGCCCGAGCGCCGC 5961929 29 100.0 32 ............................. AGCCACAGCAACCACTGGCGCTGCGGATCGGC 5961868 29 100.0 32 ............................. GCGCCATCGCTCTTGCCGCCCTCGTTCTCTCC 5961807 29 100.0 32 ............................. ACGATGGCCTCGAACTGGCCGCTCGGTGGATG 5961746 29 100.0 32 ............................. GCTGACCGGTGGGCCGCCCTTCAGGACGTGGC 5961685 29 100.0 32 ............................. CGGCCGAGTGGCACGGGACGCACAGCAATCCG 5961624 29 100.0 32 ............................. ACCCCTCCGCATGGACGGTCCCCCATGCGGAG 5961563 29 100.0 32 ............................. GCTGACCGGTGGGCCGCCCTTCAGGACGTGGC 5961502 29 100.0 32 ............................. CGGCCGAGTGGCACGGGACGCACAGCAATCCG 5961441 29 100.0 32 ............................. ACCCCTCCGCATGGACGGTCCCCCATGCGGAG 5961380 29 100.0 32 ............................. GTCTGGGGTCGGTGCCGCATCTCGTTCGGCTG 5961319 29 100.0 32 ............................. GGCCGGACCGACCGCAACATCGTGGAAGACCT 5961258 29 100.0 32 ............................. AGGCCCAGCAGCTGCTGCAGGAACGCCTCGCA 5961197 29 100.0 43 ............................. TCGGCCACGGTGTCGTCGGCGTAGTGCTGCTGTACCGCCGCGT 5961125 29 100.0 43 ............................. TCGGCCACGGTGTCGTCGGCGTAGTGCTGCTGTACCGCCGCGT 5961053 29 100.0 32 ............................. TGGTCCAGCCCCACCTTGCCGACATCGAGCTG 5960992 29 100.0 32 ............................. GCCCGGGTGCGGGTCTCGCTGATTCCGAGAGG 5960931 29 96.6 32 ............................G CCTGATCGGCCAGCGTCCGCAGCCCGGCTACG 5960870 29 100.0 32 ............................. GGGATCGTCGCCAAGGCCGTGTTCACGCTGGT 5960809 29 100.0 32 ............................. GCGGCACGCAGCCGGTCGCGGAGCTGGTCGAT 5960748 29 100.0 32 ............................. TGGGAGCGGATGCCCGCGAACTGACCGCCCGT 5960687 29 100.0 32 ............................. GACCGGCTGCGTGCCGTCGCCCCCATTGCTGT 5960626 29 100.0 32 ............................. AGCGAAAGTCGACTCTCGCACAAAGAGCCCCG 5960565 29 100.0 32 ............................. GATGGCCTCGCGGTACGCCGTGGGCTCGCTTT 5960504 29 100.0 32 ............................. CGTCCGAGGGTGAGGCGGCAGAGCCGCAGCAG 5960443 29 100.0 32 ............................. GGTGAGGTGTACACGGACGAGGATCTGGAGCG 5960382 29 100.0 33 ............................. CATCCCTGGCGTCCCGAACGAGCCCGTCGAGTA 5960320 29 100.0 32 ............................. GATGTCCGGGTGATTCTCGGCGTGGCCGGCGT 5960259 28 96.6 32 .....-....................... TTCCCGGCGTCGGCCGGGTTGGACGGGTCGGG 5960199 29 100.0 32 ............................. GCGCTGCTGCGGGCGGAGAAGGGCAGCACCCG 5960138 29 100.0 32 ............................. GCTACCGGCGGGTACCACATGCTGGTCCGCGG 5960077 29 100.0 32 ............................. GAGTTCGTCATGCGGCGAGCGGCCGTGGACCA 5960016 29 100.0 32 ............................. ATCGGCGGCCAGAACGGCATCCGGGGCCAGGC 5959955 29 100.0 32 ............................. TGGTGGGCAAGGTTCGTCAGCGGGTCGGTCAG 5959894 29 100.0 32 ............................. CGACGCCCCCGCGGGCCGCAGTCGCACTGGCG 5959833 29 100.0 32 ............................. CCGCTCCGCGATGTCCTCCCCGAACTCGGCCA 5959772 28 96.6 32 ...........-................. TCGCCGCACTCCGCGCGGAGATCGACCGCATC 5959712 29 96.6 32 T............................ GTGAAGGTTTCATCCTGACCGGGCCCTGGAAG 5959651 29 100.0 32 ............................. ATCGAGCACCACTTCGTGGTGGACCCGTCCAA 5959590 29 100.0 32 ............................. AAGAGGTTCGTCAGAATAGCCGAAGAGCTCGG 5959529 29 100.0 32 ............................. GCGAGCGCCACCAGCACCCGGCTCGTCTTCTG 5959468 29 100.0 32 ............................. TGCCCGCTCCGTACGGGACGGGAGGGCACGCG 5959407 29 100.0 32 ............................. GTGCAGAACGCTCACTGGGGTTCTCCTTGATG 5959346 29 100.0 32 ............................. GGACAGGGCGACCGTGCGGCGCTGACCAGCCA 5959285 29 100.0 32 ............................. CCGCCACGGCGTGCACCCCTGCGGGACACTGC 5959224 29 100.0 32 ............................. GGCTCGGGCCAGCCCCCGACCTCGTCCAGCAT 5959163 29 100.0 32 ............................. GACACCACCTTCCCGGTGCGGGACATGTACCA 5959102 29 100.0 32 ............................. TCGCCCTCTGAACGGGGGTGCCATGGCGTACG 5959041 28 75.9 32 ..AT...........-...C.G..GC... GAGACGCATCCTTGGTGGGAGTAGACGACTCC A [5959029] 5958980 29 75.9 32 ..CT.......A.A.......G..GC... TGTGGAGGCTGCCTCGAAGGTCCAGCTCCGAA 5958919 29 89.7 32 T..T.......A................. GGGCCCATTGGCTCGGTGCCGACGCCTGACCT 5958858 29 86.2 32 .C.........A.......A....A.... ATGCGGCTGGTCGCACCCATGACGTCGTGGTC 5958797 29 100.0 32 ............................. CGGGCAAGTTCGTTTTCCGGAAGCCGTCTTAC 5958736 29 96.6 32 .......................T..... ACTTGGATCTGGAGCGGGCATCGGTCGAACTG 5958675 29 86.2 0 ...........A..C.....A.....G.. | ========== ====== ====== ====== ============================= =========================================== ================== 81 29 98.6 32 GTGGTCCCCGCGCCTGCGGGGTTGTTCCC # Left flank : CCACCACATCGAAGGCGGGCGCAACTACGCGGAAGAACCCATCTGGTGACCGTCATCATTCTGGCAAACTGCCCCGCAGGCCTACGTGGCTTCCTTACCCGCTGGCTCCTGGAACTCTCCCCCGGCGTATTCCTGGGATCACCCTCAGCACGCGTACGGGAAATTCTGTGGGCCGAAGTCCGCCAATACTCAGGCCAAGGCCGCGCGCTTCTCGCCTACCAGACCGACAACGAACAAGGATTCACCTTCGAAACCCACGACCACGCCTGGCACCCCATCGACCACGAAGGCCTCACCCTCCTCCGGCGCCCAAACCCCAATTCTGTTCCCCCAGACACCCACACCACACAGCCTCCCCGCCAAGGCTGGAGCAAGGCAGCCAAACGACGCCGCTTCGGAAAGTAGCAACGAGGGTGAGTAACACACTGTCCATAATGCCGGATCTTGGCAAAGTGAGCAAAAACAAGTACACACCGAGGTAAAGCCCCAGGTCAACGCCT # Right flank : TGGCGCCAGCCCAGCGGACCAACGCCGCAGGTGACCTCTGTGATTCCGTGATCTCGGCGACCGTCCCCTCGTTCGTTTCCATATGCCTGATGCCCTGCCGAGGGCCGGAAGCAACGGTCAGCCGACGGTCTACCTATTAAGCGGAACTACCGTCTCGATCGCCAGCTGCCCGTCCCCGCCCGGCGGCTCACCCAGTTCCCCAGTTCCGAGCGCCCCGCCGAGGGCTCGAACCTGCGGCGGTCGGCCAAGTTTGGTTCTGTGCACCTCCCCTTGGTCGGAACGTGGCAATAACAGCTTCGGCAATCTCTATCTCCTGTGTGAGAACGAAGAACGGTAGCTCCAGCCATTACCCCTCCCCCCACGGCCCCTGCTCCCGCGCCTGGTGCCGACGGTTGCGATCCAGGACGCGTCTGTGACCGAGGGCCCTCGCTCGGCGGAACCGCCGATTGGCTTTCGCGTCCAGTTCGCCTCCGCGGAGCCAGAATTGACCGCAGAAGCCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [41-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6372566-6374683 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031320.1 Streptomyces armeniacus strain ATCC 15676 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 6372566 30 96.7 31 .............................A CGCCGCGGCTGCGCTGCATGCCCTGAAGGGT 6372627 30 100.0 31 .............................. ACGTGCCGGTCATGGTCACCCAGGCCGTGGC 6372688 30 100.0 31 .............................. CCGCCGCCGACCCGATCGTGGTCGCGGGCAG 6372749 30 100.0 31 .............................. CTTCAGCGGGCCGCACAGCGCCTCACCGACG 6372810 30 100.0 31 .............................. GGGCATCCGGCTTGTCCTTGCGGGTGCGGAG 6372871 30 96.7 31 .............................T CGGTCTTGTCGCCGTTGGCGCGGGCACGCCA 6372932 30 100.0 31 .............................. CGGCACTGCAGTGCGCGGACACGGTGCTGCA 6372993 30 96.7 31 .............................C CGGCGTGGACGACCTGATCAAGGCATCCCCG 6373054 30 96.7 31 .............................C ACTTCCCCGGCGTCCAGCTCACCCTCTCCCA 6373115 30 100.0 31 .............................. CCTTGAGTCCCCTCTTCGCGGGGTCGATGTC 6373176 30 100.0 31 .............................. GCCAGGAAGTGCCGAATCGGCAATCGTGCTG 6373237 30 96.7 31 .............................C GGACCCCTCTCCGCATCCGGCCCTCTTCGAG 6373298 30 96.7 31 .............................A GGGTCGGAACCGAGCTCGGCCGAACGGACGG 6373359 30 96.7 43 .............................C CCCGCCGGGCGAACGGCAACCGGGGTGGCGCGGTCGTCGTGAT 6373432 30 96.7 31 .............................T CCCCCGCGGGCTGGTCGTCAAGATGCCCTCG 6373493 30 93.3 31 .....................G.......C TGCGCCACCCCGCCGTGTCCACGGCCGGGAG 6373554 30 96.7 31 .............................T GAAATCTCGGGGGAAATGCAAGGGGAATGGC 6373615 30 96.7 31 .............................C GAGGGCACGGACCACAGAGAGGAGGTTGTCC 6373676 30 96.7 31 .............................T CCACCTACGGCACGATGGCGCCGATCCCCAA 6373737 30 96.7 31 .............................A TCGTCCAGACCGTTACAGGCGCCGTCAACGA 6373798 30 96.7 31 .............................T ACCAACTCGGAAGAGCGGGCGGTTCGAATGG 6373859 30 96.7 31 .............................A AGGCGATGACGCAGTCGCTGGACACCTCGAC 6373920 30 96.7 31 .............................T CGCCGTACCCCTCGGCCCGAAGCCGGTCGGC 6373981 30 96.7 31 .............................C TCACCGTCTCCTGCTCCCCGTGCAACAGCAG 6374042 30 96.7 31 .............................A CCGCGATGGGCCAGGCCGCCCGCGTTGTCGG 6374103 30 96.7 31 .............................A AGGGCTTCGACTGGGCGTACGGAAAGGTCAC 6374164 30 96.7 32 .............................T CGGCGGCGTGCTGGCCGACGACTACGCCGTCT 6374226 30 100.0 31 .............................. TGGGAGCACCTGGTGAGCGTGGAACGGTTCG 6374287 30 96.7 31 .............................C ACGCCAGCACCAAAGCGAAACAGGACTTCGT 6374348 30 100.0 31 .............................. CCCGCTCCACCGCGCGGCGTTCGGTACACAG 6374409 30 93.3 31 .....................G.......C TGGCCCGGGAGATCATGGACGGCCAGCCCGC 6374470 30 96.7 31 .....................G........ AGAGCGTCGTCTCGCCGTGGATGAGCGGGAC 6374531 30 96.7 31 .....................G........ CGTCCTGGTCGAGGTGGTGGAGGGTGGCGAG 6374592 30 96.7 31 .....................G........ TATCCCTCTTCGATAGGGATTCGCAAGGGGT 6374653 30 86.7 0 .....................GG...G..T | G [6374670] ========== ====== ====== ====== ============================== =========================================== ================== 35 30 97.1 31 GTGCTCCCCGCGGACGCGGGGTTGGTCCCG # Left flank : TGCGCGAATGCGACCTGATCCGACCCGGACTCGGCGCGTACCTGCTGTCCCGCGCACCCCGACCTACTCGACGGCGTTCTGCGCTACCTCGTACAGCTCCTCCAGCACCCCCTCACCGTCGAAGGCAACAGCCTCCCCGGCTGGTGGACTCGACGGCCCAACCGGTGAGCCGGACACCAGCTGGCCCCTGGGCCACGGGAACTTCGGCATGGCCCACGGCGTGGCCGGCCCCGTGGCGCTCCTCGCCCTGTGCGCCCGCGCCGGACACACCGTTCCCGGCCAGTACGAGGCCCTGGTAGCGGCATGCCGCCTGCTGGAAGAGTGGGCACGTCCGCGCTCGCCCCTCGTCGAGGACCAGCAGTTCGCATCAACCCACTGGATGGAGCAAGGTGGCGAAACGACGCAAGTTCAGCTGACTGCCCGCTATGGGCAATATGACTGAATCGGCAATAGTTGCTCAGAACCCCACCCTCGCAAGGCAAAACCCCAGGCCGCTGAGG # Right flank : TCTATGTCTTTCGTCAAGCGAGGCGTGGGGTTCTGGGTTCGTAGAAGGCGCCGTCGCGGAGCATCGCGAAGAGCACGTTGATCCGTTGTCGGGCCAGGCGGAGGAGGGCTTGCGTCCCCCGAGCTCGGCAGCGGAGCCGTCGAAGGGGGGGAGAGATGTGTGTGAGAGACAGGCTCCGGCGGCGGCGATTTCGGCGGCGGGGGCGGCTTCGACGGTGGCGGCGGCGGTGGCTGCGGTGGCGGCGACGGCGGTGGTGGCGGCGGCGGTTGCTGAGCCGCGTACTCGGGGACGCGGGACGCCAAGGGGACGCGTCCTCTTGACGGTTACGAGGGGAGGGAGCGTGCGTGGTCGCCCATGTCGCCATGATCGTCATCGGTGCGTTTATCGCGATCAACGGTGCGGTGGAGTGGATCAAGTTGCTGCGCTGGTTCCCACGGCGCCGGCGCGCTCGTGCTGTCTTCGTGGGCACCGAGGACGTGATGCGGCCCGATCCGCAGATC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGACGCGGGGTTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //