Array 1 1035258-1033952 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHXER010000002.1 Bifidobacterium pseudocatenulatum strain YIT12232 YIT12232_2, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=================================	====================================	==================
   1035257	    33	  97.0	    35	A................................	TGCGGGGTTTGCGAATAGTGGTACGTATCGTGCGT 	
   1035189	    33	  97.0	    34	A................................	AATTTGTTGTCATCCCTTGTAATCGCAAAATACG  	
   1035122	    33	  97.0	    34	A................................	AGGCGCGTCAACATGGCATGTCACGCCCCGATAA  	
   1035055	    33	  97.0	    35	A................................	TATGAAATGAATCGCCGTGACCAATACCCGATTTC 	
   1034987	    33	  97.0	    34	A................................	GTCAATGACTTTTAATTCGGAATTCCCTCAGACT  	
   1034920	    33	  97.0	    36	A................................	CTGCATGCGCTGTCGAACCTCGCCACCGGACTTGCG	
   1034851	    33	  97.0	    32	A................................	ATCAGCCGCCAGCAGAAGGCCAAGGAAGCCGC    	
   1034786	    33	 100.0	    34	.................................	CCATCTTGTTCTTCGCGGCGGCCGAGAGGGTGGA  	
   1034719	    33	 100.0	    32	.................................	CCAAACAGGGTGGATACAATGGCACGGCGCAG    	
   1034654	    33	 100.0	    33	.................................	ATCGTCTCGATTTCCTTGTAGAGCTTCGCGGCA   	
   1034588	    33	 100.0	    34	.................................	TCCAAGATGAGGGCTGACGGCACTCTCTCCACAA  	
   1034521	    33	 100.0	    34	.................................	ATACCATCCTCGTTAAGGGTGGCGTGGTCGAACA  	
   1034454	    33	 100.0	    34	.................................	GTTTACGTCACGGTTAATCTTTCGGACAGTGGCA  	
   1034387	    33	 100.0	    34	.................................	ACGATAGCCATGGCGCTGCCCAGGATCATCGTCG  	
   1034320	    33	  97.0	    33	....T............................	AAGGCCGCGTCCGTGCAGGTGCAGGCAGCTCAG   	
   1034254	    33	 100.0	    35	.................................	ACGTCGGACAATACCATCAAGCAACAGGCCAACGA 	
   1034186	    33	 100.0	    35	.................................	CGGACGATGCCGCTTGTGCTGCGCTTCCTTGGTCT 	
   1034118	    33	 100.0	    35	.................................	GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 	
   1034050	    33	 100.0	    34	.................................	GATACGATTAAGATGATTTTCGAGCGTCGTATCA  	
   1033983	    32	  97.0	     0	...........................-.....	|                                   	
==========	======	======	======	=================================	====================================	==================
        20	    33	  98.7	    34	GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT	                                    	       

# Left flank :   AATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACTT
# Right flank :  CGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTTTGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC

# Questionable array : NO	 Score: 9.12
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [9,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.20,-5.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,10.05   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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