Array 1 427319-429366 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020872.1 Dickeya fangzhongdai strain PA1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 427319 29 100.0 32 ............................. AAGAGCGCCCACGTCGCCGCAATCGGGGCTAA 427380 29 100.0 32 ............................. GATACATTATCCACAACCTGTCCGTTGAATTC 427441 29 100.0 32 ............................. CCGTATCTCCCGACACTACCGGGTGATGTAGG 427502 29 100.0 32 ............................. AACGCCGCCACCCCGCCACCATAGCCCAGGCC 427563 29 100.0 32 ............................. CCGTACTCTATGATGCGTCCGGCGGTGTCATA 427624 29 100.0 32 ............................. CCAACCCGCGCCCTTCCACGTTGGAATAGTCG 427685 29 100.0 32 ............................. AGACTGGCGCTGCCGTTGGTGTGGTGCATCAT 427746 29 100.0 34 ............................. AATCACTCACCACGCGTATCGCGGAACTGGAAGC 427809 29 100.0 32 ............................. AACACCCCCTGCAGCAGAGGCTAGTGCGATAA 427870 29 100.0 32 ............................. TTTACCGCGCAGACGCTAGCCGAGAACGTGGT 427931 29 100.0 32 ............................. GCCAGTATATTACATAAACCTATTATTCTGCA 427992 29 100.0 32 ............................. TAACAGGCGGTCAAACAGCAGATAATTAGCGC 428053 29 100.0 33 ............................. CGCAGGATATCGCGCAGGTCAGACGGCAGCCGC 428115 29 100.0 32 ............................. TGATGCACAGCCTGCATGCCGGGAAATCCGGC 428176 29 100.0 32 ............................. ACGGCCGGCGGGAAATGACGAGACAGTCCGAT 428237 29 100.0 32 ............................. TCACCTAACAGGTTAATCACACCAACGGCAGC 428298 29 100.0 32 ............................. CGCCAGGAATTGCAGGCTACAAGCCGCCGCGT 428359 29 100.0 32 ............................. TTTCCGCAGCACGGAGGGCCTCGGGTAATAAA 428420 29 100.0 32 ............................. GTTTAGAAACTGGCCTCTATATCCGCGCAACC 428481 29 100.0 32 ............................. TTAGACATGAACAGTATGCCGCGTCTTTTTAC 428542 29 100.0 32 ............................. CATGTAGTTCTCCGCCCGAACCCCCACTACCT 428603 29 96.6 32 ............T................ GTTGAAAATCTTGGCAACGGCATGTTTTCCAT 428664 29 100.0 32 ............................. GGACGGCGGGCCACATGAACGGTGGGTACAAC 428725 29 100.0 32 ............................. AAAATGTTATGTTATCTATGCATCCCAAAGAT 428786 29 100.0 33 ............................. CAGAAAACGAAGAAGAAAAAAGAGGAAGACTTC 428848 29 96.6 32 .........................G... AGCACTATCGATCGGATTGATAACAAACTGGA 428909 29 100.0 32 ............................. GACGCCATGCTACCGCCAGGGGACAGCAATAT 428970 29 100.0 33 ............................. GGCAGCAGAAGGCACAACAAGGGAAAGACTCAT 429032 29 93.1 33 ............AG............... GGGATTTCAGATTACGAGGGCAGCAGCCGCGAC 429094 29 93.1 32 ............AG............... CGCATAAAAAGCACCGCGCAGCACATCAGTAA 429155 29 93.1 32 ............AG............... AGGTCGAGCAGGGCGAGGAAATGAAGCAGGAG 429216 29 100.0 32 ............................. GTCGAGGACTTCAACGACTACACCGTTTTCAC 429277 29 93.1 32 ............AG............... GTCTTTGACAGCAGAGTCGCGTTTTCAGCACC 429338 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================== ================== 34 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCCGGCGAGATCGCGCCGCCACAGGCGCCGCCGGACGCGCAACCGCCGGCTATTCCCGAGCCGACGCCGTTTGGCGACGCCGGTCACCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTCACCGAGAACGTGCCGCCGCGCCTGCGCGGTCGGCTGGCGATCTGGCTGCTGGAGGTGCGCGCCGGGGTATATGTGGGCGACACCTCGCGTCGGGTGCGGGAAATGATCTGGCAACAGGTGGTGGAACTGGCGGAGCAGGGCAACGTGGTGATGGCCTGGGCCACCAATACCGAATCCGGTTTTGAGTTTCAAACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGACTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAATAGGTTAGCGTTCTTTAACAACCGGGTAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : GTTGATTAAGATAGCCTGATCGGCGGCCGGTTACGAAAAGCCACTACTCAGGTTTGGGTTAAAACGCGTGCCAGTCGTCCTCGCTGCCTGATGCCTTGCCCGATGATGCCGCCGGTTTTAACGCCAGTGTTTTCGCGGCGGGTGGGGCGGAAAGCCGGGGTTTGTTGCCGGGTGCGCTATAAGCGCGGTGGCTGGTTTCTTCCTGATGGAAGATGCTGACCACCTGTTTTAACTGTTCGGCCTGCTGTTGCAAGGCTTGCGTGGCGGTGTTGCCTTCTCTGACCAGCGAGGCATTTTGCAAGGTGGTTTGCTCCATCTTATTGATCGCCATATTCACCTGTTCGATGCCAAGCGACTGCTCCTGACTGGCGACGCTGATTTCCCCCACCAGCTCGCTCACTTTGCGCACGCCATCCACAATTCCCTGAATTGAGGCGCCGGCTTTTTCCACCAGTTGGTTCCCGGCGTCCACCGTTTGTACCGAGTGACCGATAAGCTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 701368-702312 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020872.1 Dickeya fangzhongdai strain PA1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 701368 29 100.0 32 ............................. CAGTGGGAACGTATGACCTTAGCCCCGGCGAA 701429 29 100.0 32 ............................. CTGCGTGCCGGCGCCCTCTACGCCTTCGGTTT 701490 29 100.0 32 ............................. CAATTACACCCGGGAGGAAATGGACGGATTTA 701551 29 100.0 32 ............................. CGACCGCCTCGCGACTGCGCCAGTTTGCAGCC 701612 29 100.0 32 ............................. CCCGTTCGCAGAGTGGAGTCGATTTTTACGTA 701673 29 100.0 32 ............................. TCACGGAGGCATTGGCAACCGGGCTGAAGCTT 701734 29 100.0 32 ............................. CGACCTGTTGGCCTACTGGCGTTGATAGGTCG 701795 29 100.0 32 ............................. ATGTCTCTTGCTGAATATTATCTAAATCGTCA 701856 29 100.0 32 ............................. TAACGAGGTGACTTGCTCAGCAGGAAAATATA 701917 29 100.0 32 ............................. CTGGTCAAAACCATGAATAAAACCGGGCGCGC 701978 29 100.0 32 ............................. CGGACTAGAGAAGAGAAGAGAAGAGAAGAAGT 702039 29 100.0 32 ............................. CCGGCGCTCTAATTCTGGCTGAGATTGACCGT 702100 29 100.0 32 ............................. CATCCGCGTTGCAATGTTTTTGCCACGATGGG 702161 29 100.0 33 ............................. GTCGGCACGTCGATAACAAACGGTGATGATGCC 702223 29 100.0 32 ............................. TCTTCCGGGAGTTCTGACCAATAACAACTACC 702284 29 89.7 0 .............T...........G..T | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCTGAACAGGGGCATAAAATCGGTAAGCGTCGGAGGCTGGTGCTGCACCAGCCTTTCTTTTTGCATTTTGCTTAGCTGTTTGACGCGATATTCCCATTTCAGCGCGGTGGAACGATCGCCCGCCACGCAGTGATACGCTAGCGTCAGCGGTCCTTTGCCGCGCAACGCGCGCGCTCCTTTCCCGGCCTGATGCTGCGCCAGCCGCCGCGTCACGTCGGTGGTGATGCCGGTATAAAGCAGCCCGCTGTCGGTGCGCAGCAGGTACAGAAACCATGTGGTCTCACTGTTTTTCACGTCATTTCCTTTTCGTGGGTCAGCGCTTATCTTACGGTGATATCTCGATAAAGGCTGCCTGTGCTGCCGTATTCGTCGGTGGCCGATGGTGGAAAAATTTGAGGCTTTTATTTATCAATAAGTTAGCGCTCTTTAACAACATAAAAAAGTTGGTGGAATTTTTCAGGTTTTAAAAGTCATTAAAAAACAAGTATATAGTTTTAGA # Right flank : TGCATTATCAGGCTTCATATAATTCGATACAGTGCTTACCTTCTTTGGTGTTACAATATTCACACAAATGATGATTTATGTGCGTTTAATTTCTTTTTGGTGTGAATAAAATCACATAACAGAGTGCGCTATCAGGGTGAAATACCCGGAAGCGCAATAGTGTGGCTGAGAGCGGGAGTGTTGTATGAGTGATTTGATTGCGGCGGCGCAACGCGCGCTGGGACTGATGGATTTAACCACCCTGAATGACGACGATACCGATGAGAAGGTGATCGCCCTGTGTCGTCAGGCTAACAGCCCGGCGGGAAAAACCGCCGCCATTTGTATCTACCCGCGTTTTGTGCCGCTGGCGCGCAAGGTGCTGCGCGAGCAGGGCACGCCGGATGTCCGCATCGCTACCGTGACCAATTTCCCGCACGGCAACGACGACATTGACATTGCGCTGGCGGAAACCAATGCGGCTATCGCTTACGGCGCCGACGACGTAGACGTGGTGTTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4035504-4035952 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020872.1 Dickeya fangzhongdai strain PA1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4035504 28 100.0 32 ............................ CATAGCTATGTGGGATATTGATTTGTATGCGT 4035564 28 100.0 32 ............................ ATCGAAACCCAGCAGATACGCGGCCTGGAGTT 4035624 28 100.0 32 ............................ ATCGCCCCGGCTACCTTGCGCAGGTTGGCAAA 4035684 28 100.0 32 ............................ GATCAGGTGGTCGCGCCCTTACAGGCAATGGC 4035744 28 100.0 32 ............................ ATCCGCGACGCGCTCCAGGTAACGAATGGCGT 4035804 28 100.0 32 ............................ GGTAGCTGTAGCGCGACGTGCCAACCGATGCG 4035864 28 100.0 32 ............................ TGTGGTTTGTTGCCGCCGAATCGCGTGCCGAG 4035924 28 75.0 0 ............AC.......A..TCCC | A [4035945] ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CGGAAATCCCACCCATAGCAATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTATCCACTCCACTCTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCGTAATCGCCATTGGCGCTCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCACACCTTCAGCACCCCTTGTTCCTGCACCTGATCGAGATGAAACGCGGCGCTGGCGCTGCCGGCCAGCCCCAGTAACAGAATGAATGAAAACCGTTTTTTCATGATAGTTCCTTGCAAGTCACGCCTGTCTGGCAAAAGCGTCACTGTAGCACGCCGCTTCCTCGCCCACCGATTTTGACCCTTTTTTTTCGCCCGTTTATAACTATCTGATTTTTAACGATGATAACGATCGGCTTTAAAAAAGGGTTTTCAGACAAAAATCCTCGTTTCTCTTTTAAAATCAGCCCACCAGCGATAAATTGCTACG # Right flank : CGCTGATGCCGTTGCCCCGGCATCAGCGGATTCAGGTTTATTCAGCCACTAGTGCGCGAACCGCCCCTCTTTTCTTTTTGATGGCATAACCGGCGGCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGGATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGCACGTTGGTAAGCGGGTAGCCCAAACTTTTGAAGCGGGTTTGCTGTTGCGCGCGCTGTTTGGCCTGACGGAATTTCAGATGGGTGATGCTGATCATCGCCCAGTTGATCACCAGCGCCGACACCACCAGCGCCATCAGCAGTTCAAACGCCTTGCCCGGCATCAGGTAGTTGAGCAGCACGCACAGCGCCGTCGCCAGCGCCGAGACGCCGAGCGACACCAGCGGAATGCCGCGGCGATTGACCGTCAGCAGTGCGCGCGGCGCGTTACCCTGCTGCGCCAACCCAAACAGCATACGGCTGTTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4041355-4040786 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020872.1 Dickeya fangzhongdai strain PA1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4041354 28 100.0 32 ............................ GACATCGGGAGCCGCATCAGTACCTTCGATAA 4041294 28 100.0 32 ............................ TGATCACTGAGTAACGCCCGGGCAAAAGGTAT 4041234 28 100.0 32 ............................ GTGTGCAGCGGCGCGGCGTAAAATTGGTGCGG 4041174 28 100.0 32 ............................ GGCCAGCCTCGGCGTCGGCATCCTGGAATTTA 4041114 28 100.0 32 ............................ TGCGCAATGGCAGTAACCAAGTCGCCGCGAAC 4041054 28 100.0 32 ............................ ATGAAAAACCGCTTCCGGATAGTCGGCGCGCC 4040994 28 100.0 32 ............................ GCTGGGTAACTGTTGAGGCCGGGCATTATGGC 4040934 28 100.0 32 ............................ TTGCTGGAGTCGTCCTCGTCGTGGTCCTCAAC 4040874 28 92.9 33 ...........CA............... TGGTTTAATCACAGTTGACCCAGAATTCAACAC 4040813 28 82.1 0 .......A...CA....T.....G.... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.5 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGGAGCTGGCGGCGTTGGAGCAGACTGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATTACCGAGCCGCTACCGGTGCCGGCGGGGGCGAAGCACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCCGAGCGACTGCGTCGCCGGGCGGTGAACAAAGGCCGGCTAACAGCAGCGGAAGCGGCTGCGCGTATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTACCTGCCGCTGCGCAGCCTCTCCAACGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGTTGCAGGATAAACCGGTCGCCGGGGCGTTCTCCAGCTACGGGTTAAGCGCCGCCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGATCTAACGTATTGATTTTAAATACCGAAATCTGGCCGCCAGAAAAAAGGGTTTTTTCGTCAAAATAGCGTTTTTTCTTTAATAATCAGGTGATAAGCGATAATTCGCTACA # Right flank : GTGCCCTCACCGTAGCCGGGCCGCTGCGCAGGGTTCACTGCCGCACAGGCAGAGGTTGACGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGAAATAGTAGAGAGACGCGATTGTCTATCCCGCACGAAACCATCCACTGCCCCCGCATACATTCGACAAACACATTCGCCAGCAATACCCCGGCTGTGTGTCAACAGCCCCATTCCTGCACAGGAATAAAAAAATCCCCCACCCGTTACCGGCTGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCTGCGAAGGCGGCAGCCACGCGCTGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 4050658-4051886 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020872.1 Dickeya fangzhongdai strain PA1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4050658 28 100.0 32 ............................ CGAACTGGTCACCGTCGCGCTGACTGCCAAAG 4050718 28 100.0 32 ............................ TGATAGCGGCATGGACCTGAGCAAAGGTCGAT 4050778 28 100.0 32 ............................ TCGCCAACGTAACCGCCAGCGACTGGCGGTCG 4050838 28 100.0 32 ............................ AGGAAATTAATGGTATCCAGGGAACCGCACGG 4050898 28 100.0 32 ............................ GCCACCGTTTTGCAGCCGTGGGCGCTGACGTA 4050958 28 100.0 32 ............................ TGATGGTCGGCACGGGGTTACCCGCTGATAGT 4051018 28 100.0 32 ............................ ATCTACACCGCGATCGTCATCCCAGCCACGAA 4051078 28 100.0 32 ............................ GGATACAGACCCGGCGACGGCGCCGCCATAAA 4051138 28 100.0 32 ............................ GAAGAGGTAAAAATCGAGTGCCAGGGACGGAC 4051198 28 100.0 32 ............................ TGGCCGCTGCCGGCGCCCGGATGCCGGCTAAA 4051258 28 100.0 32 ............................ ATAATTATGTGTACGCCTTTGTCACGAGCTGC 4051318 28 100.0 32 ............................ GTCATCGAACTGCGTCACCAACGCCTCTTCCT 4051378 28 100.0 32 ............................ TGGAACTTTCAGCAGACGTTGGGCTTCAATAC 4051438 28 100.0 32 ............................ CGCATCCGTGGCCGGGTCTTGCAAATCCCAGA 4051498 28 100.0 32 ............................ TTTCACGGCGTCAACAGCCTGACCAGCAGCGG 4051558 28 100.0 32 ............................ AATCTCGCCCTGATCAACAAAATCGCAATGGT 4051618 28 100.0 32 ............................ ATCACCGTTGCGGATCATTTGAGCTATAAGAC 4051678 28 100.0 32 ............................ ATGATCTGATTAATCGCGTCTGTTCCCGCAGC 4051738 28 100.0 32 ............................ TGCCCGCCGTGACCAGCGCGCTCAGCTTGCCG 4051798 28 100.0 32 ............................ TGGCTACGTAGTGTTTTTGCACTGCTCGATGC 4051858 27 85.7 0 ....................G..-..CG | AG [4051876] ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.3 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTCACCGAGGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCGATAGGGATATTCCAGTACAGCGACTGATTTCCTTCTTCAGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCTCTGCCGCAGTGATAGACAAACACCACCCGCGTAATAAAACGCAGGCTAATAATTCATTGAAAAATACGTAATACACTGGAAAGTAACGAAAATCAGCCTAGCACAGCCCAAACGGGAAAGTGAATGACGCCAGAAACACTTTTCCCGCTTCAATACCCTTTTTTTCAGCCGCCTTTTTCGGCATTGAAAAATCAATAAGTTACCGAAGACCGAAAAAAAAGGGTCTGGCGGTGAAAATCGCCAATTGTGGGCCGGGATACAACGGGTTAGAGTCAACGAGCTACG # Right flank : GGGGTGCAGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGAAGTGGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTTCTCTCTATCCTCATCCGGCAGTATTCCCTCCCCCACTCGGGGAGGGAAATATCACTCAGAACGACGTCCAGTCGTCATTGCTACCAGCGGTGGCGGCGGCACGTTTTTCAGTCGCAACCGGGCGAACGGAAGCGGCAGACGGCAGCGCGTGGGATAGCGCCGCCGTCCGACGGGCCGGCGACGGCGCGCCGTTGTTGCCCTGCGGCGTCAGGCGGAACGCGCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //