Array 1 6489-4568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODJ01000020.1 Streptomyces sp. NRRL S-575 contig20.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6488 28 100.0 33 ............................ CGAATCGCGGACATAGCCCACCCCCCGTGAGAT 6427 28 100.0 33 ............................ CGAACTCCGGGACGGGTGGCTCGGAACCGTCCA 6366 28 100.0 33 ............................ CGACGTGTACGTCCCAGTCGAGGCCGCAGGGAT 6305 28 100.0 33 ............................ CTCGCCGCTACGACGCTTCGCGGCGACCTCGAC 6244 28 100.0 33 ............................ CTCGACGCCATCGAAGGCGCCCCCGAGTGGACC 6183 28 100.0 33 ............................ CGAACTCCGAGACGGATGGCTCGGCACCGTCCA 6122 28 100.0 33 ............................ CTTCGTGACGGGCGTGATCGTCTTCGCCATCAC 6061 28 100.0 33 ............................ CGCCACGCAGCCTCCGGCCATGGGCACCACGCA 6000 28 100.0 33 ............................ CAGGTGCGAAGCCTGGCTGTACGCCATGAGCGG 5939 28 100.0 33 ............................ CTTCCCGTCGGACGTCTCCATGTACTGGGACAG 5878 28 100.0 33 ............................ CCGAAGATGACGAGATACGCCGCCACGGCCGCG 5817 28 100.0 33 ............................ CCCTCACGATCCTCACCAACGATGTGGCCCCGG 5756 28 100.0 33 ............................ CCGGGCGATCTCCCCGAGAGAGAACCCGGCATC 5695 28 100.0 34 ............................ CTGCGCCCACGGAACGTGCGGGACCTCACGCGGC 5633 28 100.0 33 ............................ CCGAGAGGACGACATCAGGAAGAGGGCATCCGA 5572 28 100.0 34 ............................ CCAGGCGGCTTCGTCTTCGGTAAGCTCAACAGGC 5510 28 100.0 33 ............................ CAATCTGATTACGCGGTCTTGAACAGGGGCGGC 5449 28 100.0 33 ............................ CGCGCCATGGCGGCGGAGCTGAACTACTGGAAG 5388 28 100.0 33 ............................ CCGGCGGGCCGAGCGCCGTGAAAACCGGCGCAA 5327 28 100.0 33 ............................ CGGGACGTGGGCTGTGATCACGTTCGATACGGA 5266 28 100.0 33 ............................ CGCGGTCACGATCGACGGAGCCGGGTCGGAGAC 5205 28 100.0 33 ............................ CGAAGGCGCCCGCCAGAAGCGCGACGAGCTCAT 5144 28 100.0 33 ............................ TCCCGTCCACGTGGTTGAGCGCGCCGACGAACA 5083 28 96.4 33 ..C......................... CAGGACGGACAGCTATGAGTAACCGTATCCGGC 5022 28 100.0 33 ............................ CGCGGCGGCCTCCGGCGACAGGGCATGGTCCGC 4961 28 96.4 33 .............T.............. CGACGCCGACCCGCTGGTTGCGGAGTGGCTGCT 4900 28 100.0 33 ............................ CGCGAAGGGACCCTGGGGCCCGGTCCACGGCGT 4839 28 100.0 33 ............................ TCGAGACCTTCGGGTCGCCGCCGTCGTTCTCAC 4778 28 96.4 33 .....................A...... CTTCGACTGTGCGAGCCAGATGCGACGAGGAGG 4717 28 96.4 33 .....................A...... CTGATGAGCGGCGCGAAGCGGTCCGCGTCGGCC 4656 28 96.4 33 .....................A...... CGCGGTGCGGTGCTTCCAGGCCTCGGGGACGTC 4595 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================== ================== 32 28 99.3 33 CTGCTCCCCGCGCCTGCGGGGGTGAACC # Left flank : GTTGTAGTGGATTATCCAGATTTTGGACTCAAGCAAGCACAGTTCGATGTGACCCGAAGGCAGGCCTGACGCACCTTTCTCCATCCCCGCAGCGGCGGGGAGCAGTGGTCGAGCACAGATGGACTCATGCACGCACAGGGATCATCCCTGCAGAGCAGGGAGCAAAGCCGCCCGCACCGTCGAGTGAACAGGTGGGCACCGTAGTGGACGGTAGTTGCCAGCCGCAGACACTCGGACAAAGCCCTGCCGGCCTTGGCGTCGAGTCGCCGTGATGAACCTGTCGGCTGTAGCGACTTCTGGTGCTGTGCGCTCGCCGCTACCCACGCCGGCAATCGAACCCACGTGTAGCCCCAGTGTGCACCCACCAGCCCCCGCTGGTCACCGAATTGTTCGAGGGAGCCAGCCCCATCTCGCGGACAATCCCTTTGGGTGGATTGTCCGACTCTCGTGAAGTGCCCCCAAGCTGCTTGTGACCGCCCTAGAGTGCCAGGTCAGCCAGT # Right flank : CCAGCGCGGGAGGGGTGTCAGGGGTGCTGACATGGGCTTTGGGGTCAGCACGGAACCAGCACGGGAGTCAGCACCGCACCGTCAAAACGGGCCGCAAGGGGCATATCTGACGAGCCCTTGTCGGAGCCGTCAGACGCGCCTGCCACAGGCCCGGCAGGGTCCCTTGTGTTGGTTGAGGGCATGTTGAGGCCCCCAACTGTGGTGGTCCGCCACATACGTCACCGACCTGCGGGCTTCTACGGTGTGGCCACACGGAACGTCCCCGCAGCCCCCCGGAAGTGGTGCACATGACCTCCCCCGCCTCGGCCCCCGCACCGACTCCGTCCGGCATCCGGAGAATCGTCGCTGCCAGCCTGATCGGCACCACCATCGAGTGGTACGACTTCTTCCTCTACGGGTCGGCCGCCGCACTCGTCTTCAACGAGCTGTTCTTTCCCGGCAGCGAGCCCCTGGTCGGTACCCTCCTCGCCTTCCTGACCTACGCGATCGGCTTCGCCGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 16786-18703 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODJ01000020.1 Streptomyces sp. NRRL S-575 contig20.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16786 29 100.0 32 ............................. GCCACATCTCGTCCGTCAGCAGGTAGGGGTCA 16847 29 100.0 32 ............................. GGGGTACCGGCCCGAGCAAGCACCTCGATCTG 16908 29 100.0 32 ............................. CCCTCTGTAAGCAACAGCAGACGGAGGGCAGA 16969 29 100.0 32 ............................. GCGTACGTCGGCTGTACGGACTCGGGCAGCTG 17030 29 100.0 32 ............................. ACGCCGAGCGACCGGTTGTCGAGCCGCCACCG 17091 29 100.0 32 ............................. AGACTTACGATCTATGGGTGAGCGACGAGAAC 17152 29 100.0 32 ............................. CACCAGTGATCTTCACTGGGCGGGGTGTCTCG 17213 29 100.0 32 ............................. GCCACCGTCCACGCACTCTCGGAGTGCACGGT 17274 29 100.0 32 ............................. TCCCCTGGCGCCCACCGCGGATGGGAGAAGAG 17335 29 100.0 32 ............................. TCTCCGCCGAGGTTGGCGTTCGGGTCCGAGTC 17396 29 100.0 32 ............................. CAGCAGGATCAGGTGCTCGGGCAGATCACCCG 17457 29 100.0 32 ............................. CACAGGATGGACGCTGGGCGCCTTGGGAGGCT 17518 29 100.0 32 ............................. CAAGGCCGCAACGTCGTGGTGCTGGGACCCGG 17579 29 100.0 32 ............................. GACCAGGCGTCCCCGCTGACGCTGATCGCGGT 17640 29 100.0 32 ............................. ACGGTGCGCGGCACCATCGAATCGTGGACCGG 17701 29 100.0 32 ............................. CAGCGGATCATCCCGGCGCACCGCCGGCTGTA 17762 29 100.0 32 ............................. GCGCACCGACGGAAGAGCAAGGCTGCCGCGGA 17823 29 100.0 32 ............................. CGGCGCGCCAGGCGGTGCTAACCGTTTCCTCC 17884 29 100.0 32 ............................. GCTCGCAGAATTCCCATGAAGTTGCTGAAGGC 17945 29 100.0 32 ............................. GAACGGGCCGGCGATGGCTTGCGCGGTGCTGT 18006 29 100.0 32 ............................. TCCGCTGGTCGGGCGACGTCGAGGGCGAAGTG 18067 29 100.0 32 ............................. GGCGCCGACGAGACCGGTCGGAGCGTGGAACC 18128 29 100.0 32 ............................. TCGACCGGGCTCACGTGAATGCTCATGTGTTC 18189 29 100.0 32 ............................. GTACCTGCAGCACTACGTCGACGCCCCGTGGC 18250 29 100.0 32 ............................. TGCAGGTTCCGCTGGGTGATGTTGGCGTACGT 18311 29 100.0 32 ............................. GTCTGGAAGGAGTCCTTCGAGACTCTGGAGGA 18372 29 100.0 32 ............................. ACCCTGTGGGCGGGCAAGGTCACCGACCTCGC 18433 29 100.0 32 ............................. ATCCTCGCCGGTGACCCGATCCTGCCGGGGGC 18494 29 100.0 32 ............................. TGGCCGCCGTTGTTCTGGTTGGCGCCGACCTG 18555 29 100.0 32 ............................. GAGCTGCGAGACGGATGGCTCGGCACCGTCCA 18616 28 96.6 31 .....................-....... AGTCGACCCCCGCGCGGGGTCCGCACGGGGG 18675 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 CTGCTCCCCGCACCCGCGGGGGTGTTCCC # Left flank : GGTCACCCTCCGCTCCGACCGTGACATCGCCGTACCCGCCGGCCGCAACTACGCGGAGACGGTGACCTGGTGACCGTTATTGTCCTGACGCAGTGTCCCATCGGGCTGCGAGGCTTCCTCACCCGCTGGCTCCTTGAGATCTCACCAGGCGTCTTCATCGGCGGACCCTCGGCACGAATCCGCGAGACGCTATGGGCGGAGGTCCGCCAGTACGCGGGAAACGGCCGGGCACTACTGGCCTACAGCACGGACAACGAGCAGGGCTTCACCTTCGACACACACGACCACAAGTGGGATCCCACCGACCTCGAAGGCGTCACTCTGATCCACCGCCCCAATGACCGCCCCACCGCCACCTCACCGACCACCCGAGGCTGGAGCAAGGCCGCGAAGCGACGACGCTTCGGAAACGGATAGCAGGCCAGACGCCCTAAATGCCCGATTCAAAGAAAGTCAGCCAAAGCTGGGGCCTCCCCCGGTAGAACCCCAGGTCAGTCACT # Right flank : CCGCCTCACCTGGATGATCCGCCCAAGCGCGGGGGGCTCGGCCCACGAGCGAGACCACCTCTTCCACCGCCACCACCAATCTCGACACGCCCGCCAGCTGCTCGGACCGCTGGGACACCAGCGACGACCTTCTCAGTGTCGGCGACAGGCAGCCCTGCCCCCTGGTCTGGGCCCGGCCCACCATCACCCACACCGCTCCCACGACCTTCAGGATCCAGTGGGGGGCGCCCCGGCGGAAAGCCCACACCCTCGCCGTCCCCGAGGACAACGGCTCGACGATCCCGGCAGTGTCAGCGGGCACAACACGCGAACGGCCCACCGTGTACCGGGTTCCGCCACCCAGCTGCCCAGGTGAGACGTCGGCCGCCCGCCTCGCCCACGCAGTGGCCGGCCTGCGCCTGACCGCCTCCGGCGGCACCCCCTGGATGGCACCGCCCTCAGCGTCCTGGCCCGGCGCTTCCTCGCCTGGACCACCACCGGCCACTGGATCTGCCCCATCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //