Array 1 469460-469608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEMS010000001.1 Cronobacter sakazakii strain Crono01 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 469460 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 469520 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 469581 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 151551-154263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEMS010000003.1 Cronobacter sakazakii strain Crono01 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151551 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 151612 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 151673 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 151734 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 151795 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 151856 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 151917 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 151978 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 152039 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 152100 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 152161 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 152222 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 152283 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 152344 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 152405 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 152466 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 152527 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 152588 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 152649 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 152710 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 152771 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 152832 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 152893 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 152954 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 153015 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 153076 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 153137 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 153198 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 153259 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 153320 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 153381 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 153442 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 153503 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 153564 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 153625 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 153686 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 153747 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 153808 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 153869 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 153930 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 153991 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 154052 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 154113 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 154174 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 154235 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180699-181765 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEMS010000003.1 Cronobacter sakazakii strain Crono01 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180699 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 180760 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 180821 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 180882 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 180943 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 181004 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 181065 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 181126 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 181187 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 181248 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 181309 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 181370 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 181431 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 181492 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 181553 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 181615 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 181676 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 181737 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 462846-462691 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEMS010000003.1 Cronobacter sakazakii strain Crono01 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 462845 33 100.0 27 ................................. GCAGCCCACAGAGCGGACGTTGATGGG 462785 33 100.0 29 ................................. ACGGCCCACGGAACAGGCGTTAATGGGGA 462723 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================= ================== 3 33 100.0 28 ATGTAGGGTGGGTAAGCGAAGCGCACCCACCAC # Left flank : GGTGCGCTTCGCTTACCCGCCCTACGGCTCCCGCAATGGGCTTTGATGA # Right flank : ATCACAGATAATCACACCTCACCACAACCCCTCCCGCCGCAACGAGAAGAGCTTACGACGCGGCGATAAACAGCTCGCGCAGTTGATGAAGCTTATCGCGCAGTTGCGCCGCCTCTTCAAACTCCAGGTTCTGCGCATGCTGCACCATCTGCGCTTCAAGCTGATGAATTTTCTGCTGCAACGCTTTTGGCGTCAGCGCCAGTTCAGCGGCTTCGGCATCTGCCACGGTGCGCCCTTTTCCGCGTCCTTTCGGCTTGGTTTTCGCAATATTCTCGCCAAGCGCCAGAATATCGACCACTTTCTTGTTAAGCCCCTGCGGCACAATACCGTGCTCTTCGTTATACGCCTGCTGTTTCTCACGACGGCGTTCGGTTTCGCCAATCGCCTTCGCCATCGACGGCGTGATTTTATCGCCGTAGAGAATCGCCTTGCCGTTCACGTTACGCGCCGCACGGCCAATCGTCTGAATAAGAGAACGTTCGGAGCGCAGGAAGCCCTCT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGGGTGGGTAAGCGAAGCGCACCCACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA //