Array 1 124055-125916 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQM01000028.1 Salinispora arenicola strain NBRC 105043 sequence028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 124055 28 100.0 33 ............................ CAACGTCTGCATTGCACACTGACGCTGCGGCAC 124116 28 100.0 33 ............................ CTTTCATTTCCGAACCTTCCCGTCGCACTTCAC 124177 28 100.0 33 ............................ GGCTGGCCCTCTAGACCTTGCGACACCGTCCGG 124238 28 100.0 33 ............................ CGTTACTCTGTGCAAGGTCGCCAACAAGTCGAC 124299 28 100.0 33 ............................ CGTGCTCGATCACGCGTCGGCCGAGGCGCACTC 124360 28 100.0 33 ............................ GTCCCTCCGATGCGAGTAATGATCACCGGTTCT 124421 28 100.0 33 ............................ GAGGTGCCCGCTATGGCCACCCGCCCCGGCGCC 124482 28 100.0 34 ............................ TGATGCGGACGGGAACCACGTACCGCCCTCGAAC 124544 28 100.0 33 ............................ CAGATGACAGTGCTCGCCGAGCTGGCACGCATA 124605 28 100.0 34 ............................ CGAGCGGGTGCTCGACATCGAACGGGCCGTAGAG 124667 28 100.0 33 ............................ CAGGATGCGGGCGAGTAGGCCTTTGCCTCGGAA 124728 28 100.0 33 ............................ TGACCGCCGCGAACGGCCTCACGGAACTGGCTG 124789 28 100.0 34 ............................ CTGCACACCGCGCTCGACGAGCCAGTCCAGGCGC 124851 28 100.0 33 ............................ CGCCGTCCTACCCGGCATCCGCACCCTGTCCAC 124912 28 100.0 33 ............................ CGCGGTGCTGACTGCGGCGGCGGCTTGATCGTT 124973 28 100.0 34 ............................ CCTGGCGGGCATCGTCGACACCGGGCTCCGCGCC 125035 28 100.0 33 ............................ AGCAGATGCCCCGTGACGTGGACCGGGCCCTGG 125096 28 100.0 34 ............................ TCAGCAACACCCGACGCCCTGGAGGAAACGTGGC 125158 28 100.0 33 ............................ CTCATCCACAGTGGCCCAGACGTGTGCCGCGGC 125219 28 100.0 33 ............................ CGGCAACCCCCGCCTCAACGCGGCATTCGTCGA 125280 28 100.0 33 ............................ CATGTTCGGCGGGTGGCACAACGTCACCGGCTG 125341 27 96.4 33 .....................-...... CCTCTACCGGCTCAATCTGCCACTACTGGAGGA 125401 28 100.0 33 ............................ CGCGACGAAGGCCAGCACCAGCCAGCCAAGAAT 125462 28 100.0 33 ............................ CACACCGAGCCACACATCCACCCCACCACCGAC 125523 27 96.4 34 .....................-...... TGAGGGCACCGACATGCCGTCTCTTACCGATTCC 125584 28 100.0 33 ............................ CGGGCCCCACCGCGAGCACGACCGCCCCGGCGA 125645 28 96.4 34 .....................T...... ACGCAGCGTCGGTCGGATCTTCGCCCGGGTCGAC 125707 28 100.0 33 ............................ CCTCTCCCCCCGCCGGTAGCGACCGAGCGGCCG 125768 28 100.0 33 ............................ CAACCTCACCACGCCGCCGCTCGACGGCCCGAA 125829 27 96.4 33 .....-...................... CAGGAAGCCCGCTACCTGGTGTGGCTGGCACGC 125889 28 96.4 0 ........................C... | ========== ====== ====== ====== ============================ ================================== ================== 31 28 99.4 33 CTGTTCCCCGCGCAGGCGGGGGTGATCC # Left flank : AGCGCCGTTTGCAGCACATCCGTCGCCTTGGGCCCGTTGACAAGCAAACTCATCAACGCCCGCGACGAGAGGTGGACGGTCATCGGTTCAGCCCCTTCTGCAGTGCATCCGTGCACAGATCATTGTCGTCCAGTGTGGATGAAGTCGTTGAGGCCGACCCGTGGATAGCCGCGACAGCTGCAACTCACCTGCAGTTCGGCCAGCCGCTGCATGGTCGACCGTTGCGATGACCACTCGAATCCGCTCCCCGGAACCCCGGCGGACAGAGGCTCAAGGTTGAGCTGTCATTGATACAGTGGACTGCCAACCGCCAGCCGTCCGTTGCCAGCGATGTTCTGCCGGCCTCCACAGCTCTGCCAGCCACTCGGCTTGGGCCTCACTAACTATGCTGCAGCCGAGAACGCTAGCCTGCCATGTCAACTGCTACGGGAAGGACGATCTTGCGGGCCCTAGTGAATGAAATCCGGAAGATTGATCTCTAGCGTCGCAGGTGAAGAAGT # Right flank : CCGCGTCGACACCGTTCGGGATCATGGCTGGGGTTGAGGTTGAGACGGCGTGTGTAGTGGGCTCGTCGGGTTCGGGCGTGATGGCGGCGTCGCCATCCTGACCAGTGCAGACGGTGGGCCCGTCGGCAGCATCCATACGGTCACCGCATCGACCGGTGTGGCGTCGACGCGTCCTGTGGGGGCGCGAGTTGGGTCTGCCGCGGTACATCCCGTCCAGACCGAGGCGGACGCGTGGTTCGCGACCAGGCCGTCGTGCGGACACACCTGGCCACCCGAGATCGAACCGAGCTGCGCCTGTCTGCGCTGCGGCCGGCACTACGACGAGTACGCCGAATAGGTCCACACGTAGCGAACAGCCGAGCATTCGACCCGGTGGGCTTCCGGATACGGTCCGGCCACCCGTGAAGCGCAGGGGCCGCGCAGTCGATGTCCAATGCGTCGAGCCGCGCGGCTTCGGTGACCGCGCGGCCCTGCTCGATCGACGCCGGGGCCAGGGCCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 35535-37946 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQM01000030.1 Salinispora arenicola strain NBRC 105043 sequence030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 35535 37 97.3 39 .......G............................. GCACCGGTGGGCCCTGTAGCCGTTCCTCGATCCGGTGGT 35611 37 100.0 36 ..................................... CGGTTCGGCGTCTACACCCCCGCGATACGCCGCTGG 35684 37 100.0 37 ..................................... CCAGCCGCGGGGACCGGGGCAGGATGACCCGACGGGA 35758 37 100.0 38 ..................................... CATCAACGCCGTGCTCGCCAACAACGAGGTCATGCGCG 35833 37 100.0 37 ..................................... CTGCCTGTAGGCCGGCAGAGGTGCAGTCCACCCCGGC 35907 37 100.0 36 ..................................... GGACGTGTGGGCCACGATGTCGGCCAGATCCGACGC 35980 37 100.0 39 ..................................... GGGCTCATCCGCTATCTGTATGGGCCCGGCCGTCGGGAG 36056 37 100.0 35 ..................................... TCGTGTCTGGGGTCAAGCGTGGCCCTGTTGGGCCA 36128 37 100.0 37 ..................................... CATCGCGCCGGCTCGGTGCCATGGGCAAGGCTCTCGT 36202 37 100.0 37 ..................................... GATCACCGCCGTGTGGGGATGGCCCGCGGTCCCCGAC 36276 37 97.3 39 ..................................C.. CTCGGGGTCAAGCTGCACAGCGTCGGCCAGATGTTGAGC 36352 37 100.0 37 ..................................... CCACCCCGATACGCCAGATGTCGACATTCGTGGGGGT 36426 37 100.0 37 ..................................... GCAGTTAGCTCGTCGATAGCAACATCGCCGATTGCTG 36500 37 100.0 39 ..................................... CCGCCCGAAGCTCCTGCACACCAAACAGCCGCCCCCCAA 36576 37 97.3 39 ..................................G.. GGGACTCGTCAGAGTCTAACCGGCCACGTCCGGTGGGCG 36652 37 100.0 38 ..................................... CCACGTGGCGGGCCGTGGTGGCGGTGCCAGTCGGCGAC 36727 37 100.0 38 ..................................... GCGGCCGGTATCACCGAGCACCTGAGGGAGTTGACCGT 36802 37 100.0 36 ..................................... TACTCAGACGCCGATGCCGATGGCGCCGGCAATCGA 36875 37 100.0 35 ..................................... CTCGGGCGGACTACGCCTACACCCTCGACGTCATC 36947 37 100.0 36 ..................................... GTCGATCTCCGGTTCGAGGGCGAACGGGTCACCGAC 37020 37 100.0 38 ..................................... GACGGCCGGCTCCCCTCTCCTACGCCGCCCTTCCCCCA 37095 37 100.0 36 ..................................... CGACAAACACAAAGACGAGCCTCCGGCCGCATTCAT 37168 37 100.0 36 ..................................... CCCTCTCCGGTGAGCCCCAACCAGCCTGGCAAGCAA 37241 37 100.0 38 ..................................... GGTGGTGCAGGTTCCCCGGAACCGTGCGTGATCTGCGG 37316 37 100.0 37 ..................................... CACCGAACACCTGGATGGTCCCCGCGTGCTGACCCTG 37390 37 100.0 37 ..................................... TCTGCGTGATGACGACGACAGCCACGCCGTCAATCCC 37464 37 100.0 37 ..................................... GAACCGGGGTGGCCTGTCCGGGTGGGACAGCCTCAGC 37538 37 100.0 37 ..................................... GCAGCCCGGCTTCGGACTGACCCCGTACGAATGGGTC 37612 37 100.0 39 ..................................... CCCGAAACAGCCCATCAGGTACTCATCGACTTGAACGGT 37688 37 100.0 38 ..................................... CCTTGACTGACCAGGTGAGGGACGGACTCCCTACCGTC 37763 37 100.0 37 ..................................... GGTAGACCAGGAAGCCCAGCCCGGAGAAGCCAGCGAA 37837 37 100.0 36 ..................................... CCCGTTGGCATGAGCTGATCGGCACCGCTTTCCGGG 37910 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 33 37 99.8 37 GCCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Left flank : ACCCGGCCACCGGAGCCGTCTACCGTATACCAAGAGTCGTTGACCGGCGGTCTATACCTTGACCGTCCGGGCGAGGTTGCAGCGTATACCGATGCCTGGTCTACCCTCTGGGCATCGGCGCTTGACGAGCAAGCGTCAGAGGATCTGATCAGCAATGCGGTTAAGGGAGAGTTACGATGAGTGATCTTTCGCGGCCCCTCTGGCGCAAGAGCAGCCGAAGCGGCAACGAGGGTAACTGTGTAGAGGTCGCCGACAACCTTCCCGGCGTCGTCGGCGTCCGTGACAGCAAGGACCCGACTGGGTCGGCACTGGTGTTCGGGCCGGCGGCGTGGCGCGCGTTCGTCGCGCAGTTCCCCGAGCAGCACTGACCGTCATAGCAAAGGCCCGGCTCACAGGGAGCTGGGCCTTTGCTATGAGCTACCCGCGGACGCCCTCGCACGAGAGCCCAGAGCCCGCAGGTGAAGATCACCATCATCTGCCATAGGCCCTTGGCCAGCGGC # Right flank : GGGCTCGGGAGCAGCGCTTATAGCTGGCGGTGGTGGGCAAGGTGGTCTAGGCCTTGTCTGTATTGCCCGCTTGACGCGCCTTTTGGAGTTCGGAACCTCCCGCGTGTCGGGTGTCCACCGGGGGTTCCTAGGCCAACTGAGTGGCAGCCCGAATGGCGTGAATGTGTGCAGTTATCAAGGTTCAAGCTGTAGGCGGAGCTTGGCTGCTCTACGAGTTGGTGAGGGTGACCGGTAGGGGAACGAGGACGCCGGCTGATTTGCGTCCCTCAACTGGCCGACGGTGAGCTGCGGCGACGGCGAAGACTCCGAGGGCGGAGATTTTGTCTTTGGACACTGTGACGTGGCTGCCGTCGCTGTCGAAGGTCAGGTCTGGGTGTTCGATCAGGGCGCTGATGGCGATGAGATCGAGGGGTTGGCGCCATAGCGGCCAGATCATGATGCGTCGTCCGCCGGATTTCGGCGGCCGCCAGAGGGTGGCGGTTGCGGTGTTGCCGTTGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAACGGAGACCGACCGCGTTGGGTCGGTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 17782-18541 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQM01000050.1 Salinispora arenicola strain NBRC 105043 sequence050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17782 28 100.0 33 ............................ CTCGACCCCGGCGTTCAGCTCATCGCGGTACTC 17843 28 100.0 33 ............................ GATCTCGGGCTCCTACCTGTGGTACCTGCGCAA 17904 28 100.0 33 ............................ CTCGTCCTCAACGCTCGCCGGCAGCGGTACGGC 17965 28 100.0 33 ............................ CAGATCGGCCGTGCCCGCGTACCGCCACCGCCG 18026 28 100.0 33 ............................ CCGGGTGCGGTAGTTCGCCGCCTCGGCCCGAGT 18087 28 100.0 33 ............................ CGCCACTCCAGGCCCGGACTCGGGTCCGAAGCC 18148 28 100.0 33 ............................ CTGTGCCTCCACGGCCGCGATCTCGGCTCGGAC 18209 28 100.0 33 ............................ CGTGTAGCCACACATGAGGCATTCGCGAATTCG 18270 28 100.0 33 ............................ CTAATTGGGCGTAACTCGTGGTCCGAGGCGTAC 18331 28 100.0 33 ............................ GCGGGCGGAGGGTGCCGCCGGGGTGGAGCGCAC 18392 28 96.4 33 ..........T................. CCACGTCCTGACCATGGCGTGGTCGAGGCCGGT 18453 28 100.0 33 ............................ CGACGTGAGGATCGACAGCACTGCGGCCAGAGC 18514 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 33 CTGTTCCCCGCACGTGCGGGGGTGATCC # Left flank : TCGCTTCTGCCCCGGGGTGACAAGGTGGAGCGCCCCACGGACGAACGACCTTGGCGCCCCGGGGCAGAAGCGATACACCGAAGGCGTCAGCACGACCGACGAGACCAGGAGGACCCGGGCCGGCAAGCCGTATCCGGCAGGGCGGACGGCCGGCCACAGGCGGTCACTCTCGCCACTGGTGCGCCGCGTGCGCCGGGACGTGACCGGCCGCCAGGCCGCACGCGCGGCCCGGCGCTGACGCGGCGGCGGGCCGAAGGCCCGCCCTTGACCAAGTAAAGAAACTCTGAACACACACGCTTCAACCACGTGTCCGACCTCAGAACGTGACAATCAAAGATCAGCTACGGCTGTGGCCTCAGCGCGACAGTCATGGTTCGTCGTCCCTTGAGGAGGTCGCTATGCTGCACCCAGTCTTTGCGCGCCAAGGCGCGAGATTGATCTTGCCGGTTGTAGTGAATGAAAACACCATAGTTGATCTTTAGAGCCGCAGGTCAGGAAGC # Right flank : CCGTCGACCAGGAGTCCAACCGGGAGGGAACCCCTGTTCCCCGCACACGTTATCGCATGGTACTACCTATATTGAAAATCAAAACCAACTATGCGAGAATCGCGCAGTGAAAACGTTGGCATTGACGACTGAGCGTCGTAATGAGTTAGCAGCGCTGCTGGATGATGAGCGACGGCTTCGGGCCGAATACCCAAAGGTAGCGGAGTACATGGTTACGTCGCCTATGCTGCCGGGCACAGACGACGCTCAGGCGGACGCAGAATTTGAATTGCGACTTCTCCACTATATGACTAGCTCCAAGGAGCGAGTTCAAAATCCGTATTGGGAAATACTTGCACCTTCGGTATTCGAGCATGATGGACGCCGTGTTGTCAACGGTGGAAGTCTAACCGGGAGTGGCAGGCTTGCCTATGCGGAGACGTTTCTTCAAGCAGCCTACGCATATGCTATACCATCTCCCGAGACGCTCGAATGGATAGCAGGGTTTTGTGCTGATAGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACGTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 364887-366193 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQM01000009.1 Salinispora arenicola strain NBRC 105043 sequence009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 364887 28 96.4 33 .................A.......... GCTCGCCGCCCGGGTAGGCGATCCGGCGCTGGC 364948 28 96.4 33 .................A.......... CTACTCATCGATCACGACAATGCGCGGTCGGTG 365009 28 100.0 33 ............................ CGCGACCAGGTCCCGGGTGTGCGCCTCGACCGG 365070 28 100.0 33 ............................ TATCTCGAGGTAGTCGTCGACCGAGAGCCTGAT 365131 28 100.0 33 ............................ CGAGAGGAGTGCCCTGGTCATGGCAGCAAATCG 365192 28 100.0 33 ............................ CTGTTCGCGGATTCGTTGCTGGATGGCCCGTAT 365253 28 100.0 33 ............................ CGGGCGGATCGGTGCGAGGGCGGCTCTGAGTCG 365314 28 100.0 33 ............................ CTGTTCGCGGATTCGTTGCTGGATGGCCCGTAT 365375 28 100.0 33 ............................ CGGGCGGATCGGTGCGAGGGCGGCTCTGAGTCG 365436 28 100.0 33 ............................ CGGTGGAGGACGCATTGTGCGCAGCAGAGAAAC 365497 28 100.0 33 ............................ CGCTCGTGTCGCTAGGTCGGCGACCGCGCCGAC 365558 28 100.0 33 ............................ GCCCGGCGCGGGTCTGCCCGCCGGCGGCCTCGA 365619 28 100.0 33 ............................ TGGCGGGCCATTGAATGGCGGGTCATGAAGTGG 365680 28 100.0 33 ............................ CCCGTAGGACGTGTTCACGAACGGCGTGCAGGC 365741 28 100.0 34 ............................ CAGGCAGCTGCCAAGATGGTCGGGACTGGCCGCC 365803 28 100.0 33 ............................ CGTGACACTGGCAAGGCTGCCCAACGCTCCGCC 365864 28 100.0 33 ............................ GGTGGCTGCCCAACGCCCGCGGATTGCGGATGT 365925 28 100.0 33 ............................ CGAGAGGGTGGCGTAGTCAGCGACGGGTTTGAA 365986 28 96.4 33 .............G.............. GCGGAGTTCGCCTGTGTTGGTTGACTAGTGATG 366047 28 96.4 31 .............G.............. CGACTAAGGCGGGTGCTCGCCGTCTATGACC 366106 27 89.3 33 ............C.G..-.......... TGTCGTTGGCCCCGCTCGCCAGCAGGGTCTTGC 366166 28 67.9 0 .......T.......T.C.AA.C..AGA | ========== ====== ====== ====== ============================ ================================== ================== 22 28 97.4 33 CTGTTCCCCGCATACGCGGGGGTGATCC # Left flank : GATGTCCTGGTCGAGCCGGACGGCCCGGTAGATCTGGGCGCGGAGGGCGGCGAGGTCTTGTGCGGTAGCCGGAACGTTCATGGGGTCGGCAAGCCGTCTCGGGTAGGGCGGACGGCTGACCACAGGCGGTCACTTTCGCCACTGGTGCGCCGCGTGCGCCGGGACGTGACCGGCCTCCAGGCCGCACGCGCGGCCCGGCGCTGACGCGGCGGCGGGCCGAAGGCCCGCCCTTGACCAAGTAAAGAAACTCTGAACACACGCTCCAGTCATGCTGTGTCCGACTCCGGTTGATGCGTTACAACCACATGTCCCGGCTTCAGGACGTGATTGTCAAGATCGGTTAGGTAGTGGTCCTCGGACGGCAATCATGGCCGTCCGTTGAGGACGGCTGGCTATGCTGGACGTAGCCTTTGCGCCCTTGACAAGCCGCAAGACTGATCTTGGCGGTCGTAGTGAACGAAAACAGCATAGTTGATCTTTAGAGCCGCAGGTCAGGAAGC # Right flank : ATCGCCTAGCCGGATTTGTTGCGGATCGAATTGCAGTGATCCTTAACAAATCCGCCGTTGCGTCCGAGTCACTGCAATCCAGCCTAAGGAAAACTAGAGATCGTCCACCGGGACGTATCACGCAAGTCGCGTGAAGCGTTCGTGGATCTGACGGGCGGCCTTGCCCGGACTGACGCTTCCGGTGTCGACCGCAAAATCCGCGTCCACCAGTGGAGGCGTTTCATCCCATGCGCGTAGCCGGGCTTCGGTGTCACCGGTTGATCGCGCGTCAATGCGCTCCCGAGCAACAGTACGGTTGCAGTGAAGGTAGACAGTGAGCCAGTGTGCTGCTGAAACGGACGACCTGACGGTCTGAACGGCTTCGATTTGGCCAAGATGAAGAACGGGTATATGCCCCTTGAGGTCTGCTTCGAGTTTGGCCCGATCGACAACATAAAGGGCTCCATACCGCCGGTTCTCCCACACGACATCACCTGAGCTCCGTATCTGCTCAAGATCTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 63579-60016 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQM01000058.1 Salinispora arenicola strain NBRC 105043 sequence058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 63578 29 100.0 32 ............................. AGGCACTGTCGCCAGCCCTGCCGCATAACTGT 63517 29 100.0 32 ............................. GCAACAGCGCCTCGGCTGCGGCTTTGGGCTCA 63456 29 100.0 32 ............................. GCTCCTCAGCGAACACCAAGACCGTACGCACG 63395 29 96.6 33 ............................G ACACGATCACCACGGCACTTCACAGTCTTGACA 63333 29 100.0 31 ............................. GGCCACCGGCCGGTGGGGATGCCGGGTGATT 63273 29 96.6 32 ............................T TCGACCGGGTGCCGGAGACGTTGCGGATCTGC 63212 29 96.6 32 ............................G ATCATCGCGTCGTCGATCTACTGGCGTCAGGA 63151 29 100.0 32 ............................. ATCGGGATCGCGGTCGGCCCATCCGGTCTGAT 63090 29 100.0 32 ............................. TCATCCACAGTGGCCCAGACGTGTGCCCAGGA 63029 29 96.6 32 ............................A TGGCCACGCGCCTCAGCCAAGCACCGCAAGGA 62968 29 100.0 32 ............................. CCGGCTGACCTGGCGATCATTGTTGGTGTCTC 62907 29 96.6 32 ............................G GCCAGAACGCCACGCTGGTGTATCGGCCGGAA 62846 29 96.6 32 ............................G TTGCGTTCCGTGGGCCCGACCTACCCTCGCCG 62785 29 100.0 32 ............................. GGCTGGAGAGGTCCGGCATCTCAGTCGAGGGC 62724 29 100.0 32 ............................. CTACGTGTTGCGGGGAGGACGTGTTGCTCTCG 62663 29 96.6 32 ............................G TCCGCAGGATCCGTCGTCCACGGGCGATTCGC 62602 29 100.0 32 ............................. GTCAGCGTGACCTGATTCGCCATGTCAGCTGA 62541 29 96.6 32 ............................G TGGGCATCGTCGCGCTTGTAGCCGTCATCGTG 62480 29 100.0 32 ............................. GTCAGGTATGAGACGGGGTTCCTGACGAGGTC 62419 28 96.6 32 .................-........... GGTCCGCCGCTGGGTGGCGGGCAGTCAGCGGC 62359 29 96.6 34 ............................G GTCGCCCCCCCCACAGGTCCAGGGCCACACCGAA 62296 29 100.0 32 ............................. GGGTCGTCTTGGCACCAGTCGATGCAGCGGGT 62235 29 96.6 32 ............................G TGGTGCCCGTTCCACCGGCCTAGTCAACCCAC 62174 29 96.6 32 ............................T GTGCAGGAGGTTATCGGCAGTGACCAGTAGGA 62113 29 96.6 32 ............................G TCATCGAGTACACCGCGTTCGCCGAATACATG 62052 29 96.6 32 ............................G CCGGACCCCGAGCCGGAGCCACATTAGGCCAC 61991 29 100.0 32 ............................. AGATCAGGCGCCGCTTTCGCCCCTGCTGCGTT 61930 29 100.0 32 ............................. CACCAGCCGTACCTGCCACCAGCGAGGCGACA 61869 29 100.0 32 ............................. AGCTCCCGCCACGCCTCACGCGCGTCGCGGCG 61808 29 96.6 32 ............................G GTTCCCCGGTGGGGCGTGGTAGCCGTGGCTCC 61747 29 96.6 32 ............................G TGAGCGTTGACCTGCACTATCTGGATGGCCTT 61686 29 96.6 33 ............................G CTGACCGAGGGCTATCGAGGCGAAGTACAGGGC 61624 29 96.6 32 ............................G TCCCCCTAACGCGTCTTCTTCGCCGCCGCCGC 61563 29 96.6 32 ............................G GCCGCCACCCGCTCGGGGGTCCACTCGGCCTC 61502 29 100.0 32 ............................. CAGATGCCGTCACGCAGGTGGAGGGCGACACC 61441 29 100.0 32 ............................. ACCCCGCACCCTGGCCACCGCGATACAGCAGC 61380 29 96.6 32 ............................T CTGTTGGGGCGGGAAACCGTCTCCGGCGCGGC 61319 29 100.0 32 ............................. ACGATGTCCTCCGGCCGCTTGACCAGGCCGGT 61258 29 93.1 32 ......................C.....G TCCATCGGAAAGTCCGCGGGATCTGTCGTCCA 61197 29 100.0 32 ............................. TACACGGCCTACGTCGCTAAGTTCGGCGAGCC 61136 29 93.1 32 ......G.....................G CCGCGTACGCGGCCGGGCGGGTGCCCTTACTT 61075 29 100.0 30 ............................. CCGAGCGGGCATGGCCTGCCAGGACGCCGT 61016 29 96.6 32 ..................C.......... TCCACCGAGATGCCGGGCAGGCTGCGCTGCAC 60955 29 100.0 32 ............................. TCGACGCCGCCACCCGCGCCCTGGCCGCCGCC 60894 29 100.0 32 ............................. TCAAGCCGTGGACGCAACTGGGCATCCCCGAA 60833 29 100.0 32 ............................. TGACGCAGCAGCCCAGGCATGGCCTGGCGCAC 60772 29 96.6 32 ............................A CAACATGTCAGGGATTGCCGTGGTCACTGGCC 60711 29 100.0 32 ............................. GTGTCCGCTCCGCGTTGCACTGGTCCAGGCGC 60650 29 96.6 32 ............................G TGATCTGTACCTTCACGGTCCGGTGCTGACCC 60589 29 93.1 29 ...........................GT CCCGACCCGGCGCCCGGTCCCGGCCGGTC 60531 29 96.6 32 ............................A ACCTGGCCCGGAGTACCGGTGCTGCGCGGTGT 60470 29 96.6 32 ............................G ATCTACCCTACGGGGCTATGGGGAGGATTACT 60409 29 100.0 32 ............................. TCATCGCCGGCTCCGGCATCGTCGTCACCGAC 60348 29 100.0 32 ............................. GCCTCACGTTCTTGCAGCCGCGCCAACAGCAG 60287 29 96.6 32 ............................G CGGAGGCGGCGCGGGAGATCTTGGCGGCCCGT 60226 29 100.0 31 ............................. CGCGACGCAGTCACGTCTTCCGGACGTGCCG 60166 29 96.6 32 ............................T CGGACGGAACCGAATGACGTGGTGTAGCCCTC 60105 29 96.6 32 ......A...................... GCATCACCGAACGTAAATTTAACGAGTATGAG 60044 29 89.7 0 .......................A..TT. | ========== ====== ====== ====== ============================= ================================== ================== 59 29 97.9 32 CTCGTCCCCGCACGCGCGGGGGTCTTCCC # Left flank : ACCCGGATCGTTCGCGACATCAAGAGCCTGCTACTCGAAGACGGCCACGCGTTCACCGACGAAGACCTCCACGAACTGTGGGACGACGAACTCGGCAACGTGCCCGGCGGCATCAACTGGGCCTCCGACTGCGCCGACAGCCTCAATGAACAAGCCTTCATCGCAGTCAGTGGACCACCAGTCGATGACGAAAAGGTGGACTTTTGACCGTTATCGTCCTTATCGCCACCCAGCAAGGTCTACGCGGCCACCTCACCCGATGGATGATCGAAGTCGCCGCCGGTGTCTTCGTTGGGAACCCCAGCGCTCGCGTCCGCGACCGCCTCTGGAACCTCCTCATCGACCGCGTCAGCGACGGGCAAGCCATCATGGCCGAGCCAGCACAAAACGAACAAGGTTGGGCCATCCGCACCACCGGCAGAGACCGATGGCACCCCGTCGACCTCGACGGACTAATCCTGACAGCCCGAAACCGTCGCTAAAACCCCAGGTCAACAAGC # Right flank : CCATGTCCAGGGCGATACTCATCCCGAGTGCGGTCTCGTGGTCGGCTCCGCCTGAAAAATGACCCCGTGGTTCCGGGCGGATTCAAGCAGTCGTCGCAACGGTGACGATCGTCAGGGTGCCAGTGCGGTATGGAAGACGTCGGCCGGGGTGCGCCAGTTGAGGGTCTTGCGGGGCCGGTTGTTGAGGCGTTGCTCGACGGCGTGGAGATCGGCTGCGGTGTGCTGCGATAGATCCGTGCACTTGGGGAAGGGCGGGTTTAACCGGTCGTCGCAGCACGGCGCTGGTAGGTCGTCTCATGACCAATGCGCATCAGTCATCGTCCGGGAGGACTCTGCATGAGCCAGCGGGAGACTTTGCTCTGGCCTCTCCCCGGTCGTCCATGCTCGATGACCACGCCACGGCTTGCGGGCTCTGTTCGTGGCGACGGACATCTCGGTGGCGGGGGTGGGCGTGGTGGAAACCCTGATGGTTGGTCTGCCGGCCCCCGTTTACCCCCCGA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCACGCGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 73546-75527 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQM01000058.1 Salinispora arenicola strain NBRC 105043 sequence058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73546 29 100.0 32 ............................. TCTGAGGAGACGATCTTGCTAAAGGTTGCGCT 73607 29 100.0 32 ............................. CGGATACCGACGACCAGCCCGGTTTGCCTGCC 73668 29 100.0 32 ............................. ATGATCGCTCGGTTAGGCGGCTGCCGTCAACT 73729 29 96.6 32 ............................T CCTATCGGTCTGGTCATTGCTGCGATTGTTGC 73790 29 96.6 32 ............................G TCGCCTGCACGGTGTCGCGCGGCGTCCGGGGC 73851 29 100.0 32 ............................. GGACATGTCCGGGTCGTACGCGAACGTGTCCT 73912 29 100.0 32 ............................. CTTCGCATCGGAGACACCATCCGACCCGGCTT 73973 29 96.6 32 ............................G GTTTACACCGCCGACGCCGACGGCGGCGGGCC 74034 29 96.6 32 ............................G TCCCACCAACTGCCGCCGTGCGGCCACCTCCC 74095 29 96.6 32 ............................G TCAACGCTGGTCACATCAGCTCCTCGCGATCG 74156 29 100.0 32 ............................. TGGAGGCCGACAACGCACGCCTGCGTGAGCAG 74217 29 100.0 32 ............................. GGCTGGGCTTCGCGGACTGCCTCGATGCGCCG 74278 29 96.6 32 ............................T GCCTGCCGGGGGGTGTCGACCGTGACGGTTTG 74339 29 100.0 32 ............................. CTTTTTGAGAGCTTTATGAGGGTTCGTGCAAG 74400 28 96.6 32 .................-........... GCCGTCGAGGTGGAGCACGTGTGGGTTCGTCC 74460 29 96.6 32 ............................G CCGCCGAGGGTGACGAGAACACAGCCGAGGCG 74521 29 100.0 32 ............................. GGGGCGACCGTCTCGGCTGCGGTGCGGCGGCG 74582 29 96.6 32 ............................T GGAGGTGGGAAACGACAGAACGCAATGGATGG 74643 29 96.6 32 ............................T TCGCGACCGACACGTTCACGCTTGGGACGACT 74704 29 93.1 32 .......T....................T GCTGACGTAGTCCTTCAGTCTCGCGCGTGTGA 74765 29 93.1 32 ..................A.........A ACGTCACGCCAAGCGCGAGATTCACGACATCC 74826 29 96.6 33 .............A............... AGACCGGTCAGTCGCGACCGATCGATTGATGGG 74888 29 96.6 32 ............................G ATATAGGCTCTCCCGGTTTTCGATCAGGGGCG 74949 29 100.0 32 ............................. GCGTCGATTACCTTTGCCCCCATTTTGCACCC 75010 29 100.0 32 ............................. TCGTTCGCCGCCTCACGGCTGACCCGGTCCTC 75071 29 96.6 32 ............................G CGCGAATGACTGATCTGTTGTTCGGGCAGCGG 75132 29 96.6 32 ............................T CCAGGGGCTGATGGGGCCCGGATGGGCAGTCC 75193 29 100.0 32 ............................. GAGCGGGCTGTGGCGATCGCCATCGCGGCTCA 75254 29 100.0 32 ............................. CAACATGCTCCGCGATTGTGGCCACGGACGGC 75315 29 100.0 32 ............................. TGACCAAACTGCCTGACGGTGTACGGGCACAC 75376 29 96.6 32 ............................G CTGACCCCGGGCCGGGCACGTTCCCCGGAGTC 75437 29 93.1 33 ......T.....................T GCGCGCTGAGTACGCAGAAGGCGAGTACGTGTA 75499 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 33 29 97.7 32 CTCGTCCCCGCACGCGCGGGGGTCTTCCC # Left flank : GCACTGAAAAGCAGGTGTCGCCTTTCCGACATCGTGAAAGCCACACAGCAAAGCCAGAAACGCCCTCCCCCGACCGCCCGTACAACCATCAAGCCTGTCCCGTACCGACGGTGCGAGATAGTGATCCCACAGGCACTCACCCACCGCCGCCGCATCAAACAGATGCTGGAGTAGCAGGTTCATGCTGCCTTCGGCACTGGACTTACCCCAGAAAACCCCGAGAGCGGGATGGCTCGCCAAACTCACCCATCAGACGCTAGCGACCACCCCCGACACTCCGCATCGACCAGCAACCGACAACCGCCTTCAACCGCCCGCAGCTGATGGGCGTCCTCGGCGCCGCAACCTCGGCGGCCGGCTCGCCGGGCCAGCCGACTCCTGACGGCCACCTACCTCCCGAAAGGTAGCCAGCCACAGCCCCCACGAATCGGTGTCCGCCAGCTACGATCGAACCGATCTAAAATCACCAAGAGCGCCAACAAAGTCGCAGGTCATCAAGC # Right flank : TAGTGTCCTGCGCCGGGAATTCGTTGAAGATATGAGGCGAGCCGGTCGAGGATCTCGTCGGCGGTCTTGGTCCAGATGAACGGTTTGGGGTCGTCGTTCCATGCTGCGGTCCAGGCGCGTAGGTCGTTCTCCAGGGCCCGTAGGGAGGTGTGCGTGGCGCGGCGCAGTCGCGTGTCGGTCAGCAGCCCGAACCACCGTTCGACCTGGTTGAGCCAGGACGAGTAGGTGGGGGTGAAGTGCATGTGGAACCGGGGATGCGCGGCGAGCCAGCGCTTCACGGTGGGGTGTTTGCGGGTGCTGTAGTTGTCGCAGATCAGATGTACGTCGAGGTCGGCGGGGACTTCGTTGTCCAGCTCGGCCAGGAACTTCTTGAATTCCACAGCCCGGTGTCGGCGATGCACTGAGGTGATCACCTGGCCGGTGGCCACGTCGAGCGCGGCGAACAGGGTGGTGATGCCGTGCCGGACGTAGTCGTGGGTGCGCCGCTCGGGTAGGCCGGG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCACGCGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //