Array 1 174819-175640 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCVO01000065.1 Escherichia coli strain FHI31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 174819 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 174880 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 174941 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 175002 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 175063 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 175124 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 175185 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 175246 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 175307 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 175368 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 175429 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 175490 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 175551 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 175612 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 201343-202958 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCVO01000065.1 Escherichia coli strain FHI31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 201343 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 201404 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 201465 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 201526 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 201587 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 201648 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 201710 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 201771 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 201832 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 201893 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 201954 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 202015 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 202076 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 202137 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 202198 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 202259 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 202320 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 202381 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 202442 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 202503 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 202564 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 202625 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 202686 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 202747 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 202808 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 202869 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 202930 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //