Array 1 400215-400012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFKE010000002.1 Cronobacter sakazakii strain Crono14-YL Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 400214 29 96.6 28 ....A........................ ATTCACATCAAACCCTTCACGTTATGTC 400157 29 100.0 28 ............................. ATTCACATCAAATCCATCGCGTTATGTG 400100 29 100.0 31 ............................. ACACACGTCAAAATACCAGTCGCGCCTGTTC 400040 29 96.6 0 ................A............ | ========== ====== ====== ====== ============================= =============================== ================== 4 29 98.3 29 GTAGGGTGGGTAAGCGGAGCGCACCCACC # Left flank : CACCATCAAAGGCTCGGTGGATCGCGCCGAGATGCATTACATCATCCGCGATTTCGACCGCGAGAATTTCGAAGCGCGCAAACGCCGTATGATGGATATCGCGAAACAGGTCGGTAAGGGGCTGCACCCGGATTGTTATATTGAGCTGGCCATCGAGGACAGCTATTACAATATGAGCGAGAAGGTGGCGGAGCATCCGCATATCATCGAGATTGCGCGTCAGGCGATTGTCGATTGCGGCATGGAACCGCAGTTAAAGCCGATTCGCGGCGGCACCGACGGTGCGCAGCTGTCGTTTATGGGGCTGCCGTGCCCGAACATTTTCACCGGCGGGTACAATTATCACGGCAAACATGAGTTTGCGACGCTGGAAGGAATGGAAAAAGCGGTGCAGGTGATTGTGCGTATCGCCGAATTGACGGCGCAGCGGGAGGCGTAAAGGCGTAAAAAAGGCGGGTGCGCTGACGCTTACCCGCCCTACAAATTCAGGGATCATTTAT # Right flank : GCGATACCCGCGATAACCGACGCCTTACTCCGCAAAATACCAGTACCCGCTGTTTACCAGCGCGGCCAGCATTGCCAGGAATGACGGATCTTCCAGCGCGTCGCCAAACATCGCCTCATTCAGCACCACTTCATTGGCCAGTTGATGCAGCGCCGGGCGGTGCGGCGTATCTATCTTCTCGCCGTTCACAAAGACGTCCTCGCCGATACGCAATACGCGCAAACCGCCGAGACGTACCAGCGTATCACCCTGTTTCAGCGCATCGTAAATTTCATCCGGCTGGTACGGCGGCTCCGGCGGCGACACATCCAGCTCGTGACGCGACTGGGTGATAAACTCACCAAACCATTCGTTGAAATTATCCGGGTCGCGGATGAGATCCAGCATCATGTCGCGCAGCTTTTCGACTTCCGCAGGCACAATGTCTGCCGGACATTCGCGTGCGGGCACATCCGGATCGCTGTAGCGATGGCTGCCGAGCTCACGCTGCAACACATAAT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGGTGGGTAAGCGGAGCGCACCCACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 189460-190028 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFKE010000005.1 Cronobacter sakazakii strain Crono14-YL Scaffold5_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 189460 28 100.0 32 ............................ TAGCATGAGTGAAAAATGTACGCCGCCTGTTC 189520 28 100.0 32 ............................ TTGGCGTATCCTGACCCATACTTACCCTTACC 189580 28 100.0 32 ............................ AACGCCCACGGTTACAATTACGTGTTCACGGG 189640 28 100.0 32 ............................ GACAACGCCGCCCGCGCCGACGCGCGCCTCGG 189700 28 100.0 32 ............................ TGTCTCAACTGGTCGATAACCACAAAGCAGGG 189760 28 100.0 32 ............................ TCTCGCCAGGCGTTTGCGACGTCACCGCCAAG 189820 28 100.0 32 ............................ AACTGCTCGCACTGCTTCGTCTTTTCGCGCAG 189880 28 100.0 32 ............................ GGTCGCTATCACGCCTGTAAAGGCCCGCACGC 189940 28 100.0 33 ............................ GCCGAAACTTTTAGCGGCCTTGCGGGCAACTGA 190001 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATGCGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGACGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAACAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTGCTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGAGCTAATTAGCTCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACATTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 190844-192250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFKE010000005.1 Cronobacter sakazakii strain Crono14-YL Scaffold5_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 190844 28 100.0 32 ............................ ATGGCGAAATTTACAGACGCACACGACCTGTT 190904 28 100.0 32 ............................ TGGCCGCGCACCCGCCCTTCGTCGTCGAGTAT 190964 28 100.0 32 ............................ AAATACCGGCTTAACGCTGTGTGGGATATCTT 191024 28 100.0 32 ............................ TCGGCGGGTTTTTTATCGTCTTTAGTCAAACA 191084 28 100.0 32 ............................ ATTTGGCCCCATCCTTTGCGAATCTGCTCATC 191144 28 100.0 32 ............................ TCGGGTTTGGCTCCAGCCTGGTTAACAAAGGA 191204 28 100.0 32 ............................ ATCACCCCGACATCGCGTGATCGCGATCACAC 191264 28 100.0 32 ............................ GATCAGCGTGAACTATCGCGGCTCGGCGGCAG 191324 28 100.0 32 ............................ GATTCGCGTAGCGCGTCGATACGCGCGCAGTG 191384 28 100.0 32 ............................ ACACTCCACGGCCCCAAGTGTAGCGAAACAGA 191444 28 100.0 32 ............................ AGAAGGCACGCTGTGAGAAAAATTCCGGCGCA 191504 28 100.0 32 ............................ ATGTGTTGATGACCTGCATGGTGTTGGAATGG 191564 28 100.0 32 ............................ CACCCGGCGAACGGCAGGAAACACCAGGCGGG 191624 28 100.0 32 ............................ AGAGGTTAGCCGCCTCTAACGTTTTGTTTATC 191684 28 100.0 32 ............................ GCTATACGCGTGCCGCCACTCCGTCTCACTCC 191744 28 100.0 32 ............................ AGATACGCCGGGCGCAGACCCTCTGTGCCCGT 191804 28 96.4 32 ..A......................... GTGGGATAACGTAACCGACGGCGTGAAAATTC 191864 28 100.0 32 ............................ TGCGCGTATACGGGCGAACGGCCGGCGCCACG 191924 28 100.0 32 ............................ AGCGCGCCGAGCGCCGAAAATATGCAGGCGAA 191984 28 100.0 32 ............................ GGTGAAATCGCTGGCATCCGCATCGAGTGAGC 192044 28 100.0 32 ............................ GCCAGATGACGGCGTCCAGGTGAACAAATCCT 192104 28 100.0 32 ............................ CGTGGGTGTGGGTAATCGAATTCCGTCGCATG 192164 28 100.0 32 ............................ ATCCACGCGGACTGAGAGCCGACTGCATTGCT 192224 27 89.3 0 .....................-CG.... | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCCCTCTGATTTAAAAACGATTCTCCATTCAAAACGCGCCAATATTTATTATCTGCAATACTGCCGGGTGCTGGTTAATGGCGGCCGGGTGGAATATGTCACCGATGAAGGTAAAGAATCGCTTTACTGGAATATCCCTATCGCCAATACCACGGTGGTCATGCTCGGCACCGGGACGTCAGTCACGCAGGCCGCCATGCGGGAATTTGCCCGGGCGGGTGTAATGGTGGGGTTCTGTGGTGGAGGCGGCTCACCGCTTTATGCCGGCAATGAGAGAGACATTGAGGTGTCCTGGCTCGCGACCTATTCCAGCGCGCTA # Right flank : AATCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACACCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCAGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 242527-243224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFKE010000001.1 Cronobacter sakazakii strain Crono14-YL Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242527 29 100.0 32 ............................. ATAACGAGAAAAAAACGGGTGAATCCTGAATG 242588 29 100.0 32 ............................. CTTTCATTAAGAAGGTATTTATTAATATGATC 242649 29 100.0 32 ............................. CTTCACCGTCGCGGGCATTAAACGGGCGGTTT 242710 29 100.0 32 ............................. CCATCATAATCATCCTTGCTTACTTTTGGCTC 242771 29 100.0 32 ............................. GAAGAATCGGAACTGGCAGCATCTTCAACAAC 242832 29 100.0 32 ............................. CGAGAATTTTTCCGCTGACTACATCCCTTGCG 242893 29 100.0 32 ............................. CGATTTAACCGCCAAGTCTCCCGGCTCCGGCT 242954 29 100.0 32 ............................. CATGCACCGGTAAACAGGTACCAACTTACTTC 243015 29 100.0 32 ............................. ATTTGTTGAAAGAATTATGCGAAGCAATCCGA 243076 28 96.6 32 ...........-................. CGGGAGTGATAACAGGTGAGGGCGAGGCGATA 243136 29 96.6 32 T............................ AACGCTGACCTGGCGAACACGCTGCAAAATCT 243197 28 75.9 0 .C.......-...C.T.C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGTTGACTGTAACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTTAGTACAAAGGGTTACTTTTAGT # Right flank : GCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTTTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 269238-270303 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFKE010000001.1 Cronobacter sakazakii strain Crono14-YL Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 269238 29 100.0 32 ............................. TTCTTTTCTCCTGCCGCTGTTGACCTGGTTCA 269299 29 100.0 32 ............................. AGGCTTGTAACCAAGCCTCTTTTTATTTGATT 269360 29 100.0 32 ............................. ACACGCTGATTAACGCCTGGCCTTTGTGGGAA 269421 29 100.0 32 ............................. ATGATGGATCGTTTAGTTATCGTGGTAACATC 269482 29 100.0 32 ............................. ATTATTTTTATGCCAGCAATACGGACTATGCG 269543 29 100.0 32 ............................. GCGACCCGACTGCGCTACTGGACGCGGCTTTT 269604 29 100.0 32 ............................. TCTCTTACATTTGACGTACTGGACGCTACCGA 269665 29 100.0 32 ............................. ACGTTGTCATGAACGGCGGGTTGTATCCGGCT 269726 29 100.0 32 ............................. CTCACACTGGTTGCATTCAACGCAACATAGGA 269787 29 100.0 32 ............................. TACAAGTGGCCGCTTCCACAAATTCGCGAACT 269848 29 100.0 32 ............................. CCAGTTTTCCCGTCGTGGTATTTGACCCGCCC 269909 29 100.0 32 ............................. ATGAACCCACCGGAAGTAGGAAAACTTTCGCT 269970 29 96.6 32 ............T................ TTCTTCGACAAAGGCGGCAAGAAGAAGATCGC 270031 29 93.1 32 A...........T................ TCTGCGAAAATTGCCCCATTCTTCGAAAAAAA 270092 29 96.6 32 ............T................ TGGTCGAAACCACGACTAACGGCGGTAAGACG 270153 29 100.0 32 ............................. GGACGCCTCAACGCTAAGTGCAGCTCTACCCC 270214 29 96.6 32 ............................C AGATCCTGAAGCGCTGTCTGCTGGGCATAAAC 270275 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGGGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACGAATAATGAATCCGGTTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGGCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTGGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGC # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTCGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //