Array 1 14-2048 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAFW01000047.1 Corynebacterium casei UCMA 3821, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================== ================== 14 29 96.6 32 ............................G CTAGTGAGGTTGCACAAAATTCCACCGATAAC 75 29 100.0 32 ............................. CGATCCCCCTACAGTGTCGATCCATACTTTGT 136 29 100.0 32 ............................. AATCCGATCCCATTGCTTACCAGACAGATCCA 197 29 100.0 32 ............................. CTATCAACCGATAGATTAAGGGGCTAACTATT 258 29 96.6 32 ............................G GGGAAAGGTTCTTTAGCCCCGCGCACTTCAAG 319 29 100.0 32 ............................. TCGTTCACTGGCACCAGTGCTGCGCCAGTCTC 380 29 100.0 32 ............................. ACCACGGGTAGGATCCCGGAGCAAGTAGGCTT 441 29 100.0 32 ............................. TGGCTGAAGCTATCGCAGACATCGATCCTGAA 502 29 100.0 32 ............................. GCAGAATCTTGGGAGTCTTCACTGCACTGGAA 563 29 100.0 31 ............................. TCAACGAAGTATTTGGCGCGGCTGGGATGAC 623 29 96.6 32 ............................T CCTCCGGAGTGCCTGGCAGTAGCCGTTGACAC 684 29 100.0 32 ............................. GCTTCAACATTGGAAACAAACCGGGGGTCTGT 745 29 100.0 32 ............................. TCCCGCTGGGTAACCGACAATCCGGAACGCTA 806 29 100.0 32 ............................. CCAGTGGAAACGGTGGCACCAGCGCGTGCAAT 867 29 96.6 32 ............................G AAGCTACCGAAGTTCAATAATCGCGGTTCGAT 928 29 100.0 32 ............................. CGCCAGACAGCCAAGAGCCAACAAAAGTACCA 989 29 96.6 32 ............A................ AGGCGTGCATTGCACTTGAGGAAAAGGCTAAG 1050 29 100.0 32 ............................. CAAACCAGCCCCAGTATGAGCGCCCACACTGC 1111 29 96.6 32 ............................G CTATGAGGATCTTGGTCTGTCTGGTAAGAACT 1172 29 96.6 32 ............................G GGCGGCGTTTACGCCTTGCGCCATGGCTACCC 1233 29 100.0 32 ............................. CACACCTGAGTTACGCTGGCGGGATCGTCTGC 1294 29 96.6 32 ............................G GAATTCCCTCCATAACATCGGGGAAAGCGCGG 1355 29 100.0 32 ............................. CTAACAGACACCACGAATGATCAAGATGACAT 1416 29 96.6 32 ..........................A.. ATGCGCCGATCCGAATTGCGCGAATATGTCAA 1477 29 100.0 32 ............................. CAATCATCCCACCCCGCGCCAAAGACCTCACC 1538 29 100.0 32 ............................. CGTACCTTTCGGCACCGGCCAATAACGCAAAG 1599 29 100.0 32 ............................. TGTTTGCAAGTGAGCCGCACACCGTTCTAAAG 1660 29 100.0 32 ............................. GCCACCGATATTTTCAAGATCTTCCATCGTCA 1721 29 93.1 32 ...................A........G AGCCGCCTGAATCGCAGCAATCGCAGCAGCAA 1782 29 96.6 148 ...........G................. CCGGCAAAAGCCAAAAAGGGCAAGCCCGGAAGAGGAAATAAGTATAACCTTCCGGTTCAAAACACCGTTAATGTTCTGAACCGGAAGCCCCTACCTCAAACCCTATAACGAAAGAATGTAAACATGAACCATGCGTATAACAGGACTA 1959 29 82.8 32 .....G...........C.A......T.G TGTTGACGTTTCGGGTTACGATGAATCGCATC 2020 29 69.0 0 ......A.T...T.T.AT........TAG | ========== ====== ====== ====== ============================= ==================================================================================================================================================== ================== 32 29 97.2 36 ATGTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CGAAGAAGGCGACA # Right flank : GGGACTAGGGCTAGAGCGCGTCCAGCTCTGAGAGTATTTTCTGTACCAGCTGGTATGGTAGCTAATTTCTTCTCGTGTCTTGAGAAACGTAGAAGTGTATTGAGATGCGTAGATGAGCTTTAGAGGACATGCCAGTCAGCTAAGCGGAAATTATTTCTGTGTCTTGGCACCCCAATTCCGTACTAAGCGGTCTATAACTGAAGATTAATATTCAGCGCCAATGGTAATACCATTAAAATTTTGAAGAACTCAAGGTCACGTGATTTTTCGGCGTTGTTGCTAGCTAATGGGCATGCCGGCGAAAAATGGGGCGGGACCGAAAGTCGTCGGAAAGTTTTCGTCGTTAGGCGAAGCGAAATCGGGCGGTGGATTTTTGAGATTCTGTGTTTGAATATCGATGAGCATCTGAGCAGCAGAAGTATCTGTTGCTCAGTGCCTTTCTTTATTCAGACGAAGGCTAGTAATTGGAGAATCTCATGGCCGCTAATACCAAGGCGAAG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.32, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4871-4294 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAFW01000019.1 Corynebacterium casei UCMA 3821, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4870 28 100.0 33 ............................ GAACTCGCAGCCCACGCCTGGGACACCACCCCG 4809 28 100.0 33 ............................ GTTCATAGCAATCGCCCGTCCCATACGTACCGA 4748 28 100.0 33 ............................ CATGGAACACAACAAGGAATATGCGACCCTGGC 4687 28 100.0 33 ............................ CTTCCGCATCGGATGCGGCGCACGCAAGAAGAA 4626 28 100.0 33 ............................ CCTCTACCCCTCCACCGCTCAGCGGTTGTACTT 4565 28 100.0 33 ............................ CTGTGCCTGCTTTAGCCCCATCACGTACAAGAC 4504 28 96.4 33 .................A.......... CGAGGTGTGCACATCCTGCTCAAAACAAGGTTT 4443 28 100.0 33 ............................ CTGCTAGGTGGGCATGGGGTAGACCTCCAGCGT 4382 28 100.0 33 ............................ CGCTTCAATTTCAAAGGGATCGACGGCGTGCTC 4321 28 96.4 0 A........................... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.3 33 CTTTGCCCCGCACACGCGGGGATGGTCC # Left flank : CCGCAGGTGCCTGGAAAGCAGAATGGTGGGTTGGATACTTCTATAGAGACTCGCTTAACAGGTGAGACCGAATTCCTTTATTCAGAACATCATCTGGCATGGTCCATTGCCGGGATGGCTGCTTTAGGAATGCCACCTTCGGAATACGGGGTCGGGGTAAGTCAAAATGAACTTCGAATTCCTGTGCCTGATTTTTGGGTGACGTTGGATGAGCTGCGAGATCTATTTATTACTCCGGTTCCTGCGGTTCCAGTGCTTCGTTGGAGGTCAACAAGCACGTATGCTTCTCAGCAAGTCAAGCTCTGGGAGCCAATTCTTAGCGCCGACAAATAATATTTAAATCCCATGTCGAAGGTGGACACCAAAATAGCGAATCAGGTTAAATGAGTAAGCGATACTCTCACGAACTCAAACCTCGCTGCTCTAAAAAGGAGACCTGCCTATTGAACAAGTTGCATCAAAACCACCGTCTGGGGTTGTAAAATAGCAGGTCGGGAAGT # Right flank : GGGACTAGTGGCGCGGTCTTTTGCTTCGGAGAGCTTTGCTTCATACGCGGGGGAATGCAATGACAGGTTGAAGATTAACTTTCATCCGCTAGAAGACGGAATCGGAGGAGTTACGGGAGAATATAGATTGCCATTTGCCCCACAGTTGTCGGCTTAGATTCAAAAATTGTCGTCGGTTCCAATGCACAACAGTTAATTGGGCTGCTGTACAATTGGTAGCTCGCGTCCTGCGTTTGCGGGAATGATCCAATGATTATGTTTGGTGTAATCAAATTTTCTTGATTTGCCCCGCACACGCGGGGGTGATGTTAATCAGTTGATAACTTCAAACTGTGTGTTCGAGGGATTCACAATACAGCGGGGCTTCATTCTGCGTCGCGTCTTAATGTGAATCACAAGGATCGACCAAGCTATTCGCAAACCTCTCCAAATCTTCCGGAGCACCCGCGATGATGATTTGGTCATCGGGGGATAGGGTGCGGTTCGCAGCTAGAGGCTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGCCCCGCACACGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31984-34943 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAFW01000046.1 Corynebacterium casei UCMA 3821, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31984 29 100.0 32 ............................. CACAAACCACCACTGGCACCATCACATGGAAA 32045 29 100.0 32 ............................. TGGAGGGCAAGCAATCGTGGAATAAATAGCGA 32106 29 100.0 32 ............................. ACATGACCACAGGCCAGACATGGCCACAAGAC 32167 29 100.0 32 ............................. TGCGACAATTGTGCGCGGTGGTGCCACCGTCC 32228 29 100.0 32 ............................. GGGCATTGTGGTTCCTTTCGGCTGGTTGCCAT 32289 29 100.0 32 ............................. GTTGATAACGGTGCGGGTGTCACTTTCACCGA 32350 29 96.6 32 ............................G TCTCGTACACCTCCACGGCTAAGGAAGAGGCT 32411 29 100.0 32 ............................. AGAAAAGGACATGGGATGAATGACATTATCGC 32472 29 100.0 32 ............................. AGTCGGTTTGTTCCAGTTAATAGTTGAGCACG 32533 29 96.6 33 ..........................T.. GGCAGCTATGTTGCTGAATTCGGTAGACCGTAC C,G [32548,32557] 32597 29 100.0 32 ............................. CAAAACCACTGATCCCTGACCATGCCCTCGTC 32658 29 89.7 32 ....................AG......G TCTGGTCGTCGCTGCGGATGATTACGGCTTTA 32719 27 89.7 31 C....-...........-........... ACCTCCGGGTACGCAAAGAGTCGCTAGACAC 32777 29 100.0 32 ............................. AACCCCCAAGCCAGCCAGAAAGAAGCAGCATA 32838 29 96.6 32 ............................G TAGGCGCGGATTGCATCGTCTAGCGTCTTTGG 32899 29 100.0 32 ............................. TCTGTTCGGTGGATTGCTAGTCCATCGGTTGA 32960 29 96.6 32 ............................A TAGAGACAATAATCGTTTGACGTAGCCTTGGG 33021 29 100.0 32 ............................. CCTAAAGAACCTATAAACGATCAAAACCACCA C,T [33037,33048] 33084 29 100.0 32 ............................. GTCAGGCGATACCACTACACGCCCATATACTG 33145 29 100.0 32 ............................. CGCGTACCCACCCACGCATGGAGCACTAAAGA 33206 29 96.6 32 ............................T TCCGCGTCCTAAGTGACGTTGGACGTGCTGCT 33267 29 96.6 32 ............................A CAGCACGCTTCATGCACGTAGTGAGAGACGAT 33328 29 96.6 32 ............................G GCTACGACTCACTCTTAGAGAAAGTGCTAGAG 33389 29 100.0 32 ............................. TGTCCACGGCTAACCGGATCGGATGGGTTGGC 33450 29 100.0 32 ............................. CCGTAACCTGCTGGCGCACGTCCTTCACATCC 33511 29 100.0 32 ............................. AGTCTTGGTTCATGCGGGACTAGATCGATCAC 33572 29 100.0 33 ............................. CTGCCTGCTGGATCATGAGGTAATCAAAACTTC 33634 29 100.0 32 ............................. TGTTCCATCATTCATATCATCGGCATCGGACA 33695 29 96.6 32 ............................G GGAGTCAAATTCTGCTCGGATTTGTGCGCGAA 33756 29 96.6 32 ............................T ACACCATCGGGCAAATCCGGCAGCTAGAGGAA 33817 29 96.6 32 ............................T GATAGGGGTAAGGCAGAAACCGTAATTTTGTC 33878 29 100.0 32 ............................. AAGAGCATCACCATTCTCGTCCGCCTGCGCTA 33939 29 100.0 32 ............................. CAGCACCGGTTAACGTTGTGGACGTAGAGCCA 34000 29 100.0 32 ............................. GTGGCAACCGTAGCGCGATCGGTCAATTTCCA 34061 29 96.6 32 ............................G AGATTGATTATGGTGGTTACGGCGAAATTCTG 34122 29 100.0 32 ............................. ATTCCAGTAATTGAACTTATGTCCCCTATAGA 34183 29 96.6 32 ............................T TTACTGCTGCGTTGTGGTGAATTACAACGCGG 34244 29 96.6 32 ............................G CCGCCACACGGCAGCTGACCGATGAAGAGCAT 34305 29 100.0 32 ............................. GGTAATTGTGTCGTTGCCAAATGCGCCGGTTA 34366 29 96.6 32 ............................G ATGGTATCAACAACGAATTGGCGGCCGATATC 34427 29 96.6 32 ............................T GCTGGTGGTCAAGGCAAGTCGCTGGGTGATGT 34488 29 100.0 32 ............................. GCCACTAGGATCCACAAGCGGTTTGAGCGCCG 34549 29 100.0 32 ............................. GCTTTCGATGAATAAGGAGTTTGTTATGTCTT 34610 29 96.6 32 ............................G GACGCGTTGAGCGGTGCCGAGAGTTTGCTTGC 34671 29 96.6 32 ............................T GAGTGCGTACACATCGCGATCATTCCACTAAG 34732 29 96.6 32 ............................G TCCACGCCGAGCTTCAAGTTACCGAGGCCCTC 34793 29 100.0 32 ............................. AGGATGGATCGGTGTGTGTCGAAGAAGGCGAC 34854 29 96.6 32 ............................G CTAGTGAGGTTGCACAAAATTCCACCGATAAC 34915 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 49 29 98.3 32 ATGTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : GAAGTTATTTCGTCCGGGGTCAATTGGTCAGAGGATGAGATTACGCCATGATGGTACTGGTTATTACAGCCTGCCCAGCTGGGCTACGTGGCGACTTGAACAAATGGCTCATTGAATTGAGCTCAGGAGTATTCGTCGGACGACCCAGCGCCAGGATCCGCGACTTGCTCTGGGAACGCACGGTTGAATTATGTAAGGATGGGCGTGCTCTACTAGTTCATTCAACAAACAATGAGCAGGGGCTAGAGTTTCTTACTCACAGGCATGATTGGGAGCCGACTGATTATGGGGGTCTGACCTTGATGTTGCGTCCTACCAAGAACAGGGAAACCTATAATCGCCGAACGGGTTGGTCAAACGCACGCAGACAAAGGGCGGGATATCGCAAGAATCCGAACGCCTAGTTGTTCTGATGCGTGTGGTTGGTTGTCCGTGTTGAATTTCAAATGAAGTCGTATGTAAAATGCCACTTGGGCTCCGAAACCCCGTGGTCATCGAGT # Right flank : CGATCCCCCTANAGTGTCGATCCATACTTTGTATGTTCCCCGCACCAGCGGGGATGAGCCCAATCCGATCCCATTGCTTACCAGACAGATCCAATGTTCCCCGCACCAGCGGGGATGAGCCCCTATCAACCATAGATTAAGGGGCTAC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //