Array 1 107197-103383 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSY01000013.1 Salmonella enterica strain BCW_3403 NODE_13_length_123756_cov_2.84993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107196 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 107135 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 107074 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 107013 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 106952 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 106891 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 106830 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 106769 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 106708 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 106647 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 106586 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 106525 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 106463 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 106402 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 106341 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 106280 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 106219 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 106158 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 106097 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 106036 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 105975 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 105914 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 105853 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 105792 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 105730 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 105669 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 105608 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 105547 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 105486 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 105425 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 105364 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 105303 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 105242 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 105181 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 105120 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 105058 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 104997 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 104936 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 104875 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 104814 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 104753 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 104692 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 104631 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 104570 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 104509 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 104448 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 104387 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 104326 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 104265 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 104203 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 104142 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 104081 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 104020 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 103959 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 103898 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 103837 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 103776 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 103715 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 103654 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 103593 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 103532 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 103471 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 103410 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 219673-221347 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSY01000006.1 Salmonella enterica strain BCW_3403 NODE_6_length_221523_cov_2.89895, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219673 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 219734 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 219795 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 219856 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 219917 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 219978 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 220039 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 220100 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 220161 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 220222 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 220283 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 220344 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 220405 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 220466 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 220527 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 220588 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 220649 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 220710 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 220771 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 220832 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 220893 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 220954 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 221015 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 221076 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 221137 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 221198 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 221259 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 221320 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //