Array 1 1051-2170 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734711.1 Planktothrix prolifica NIVA-CYA 406 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 1051 35 100.0 38 ................................... GTTCAGTTTTAAAGTATATCGCTGACCTACAACTAGGT 1124 35 100.0 39 ................................... AGTTACCCTATTGGTTCTCCTGTGATGGGATCAATAGGT 1198 35 100.0 37 ................................... TTCGATAAACCATTATAATTGTCGACTTTGGGAACAC 1270 35 100.0 37 ................................... TGATTCTCTTCATTGTATTCTACTACTGAAAAAAAGA 1342 35 100.0 38 ................................... TAAAACAGTACCTACAGTAGGCTCTTTTAGAAGCATGA 1415 35 100.0 35 ................................... GAGAACCAATAGGTTCTCTTCGTTGTGGGGTACAG 1485 35 100.0 37 ................................... CTTGGAAACATCCAAGGTGTCGTTTCCGAGGTCACCA 1557 35 100.0 39 ................................... CTCTTGAACATTATCAATATAGCCAAAAGATGAGAAAAT 1631 35 100.0 40 ................................... TTGTCACCGGGATCGGTAATTGGATCCCCGCGGAGTGAAA 1706 35 100.0 31 ................................... TTTTCCTCCTCCAAGATCACCAGGATCCGTG 1772 35 100.0 40 ................................... GCAGCCTATTTTTGAATAGGTTTATACTCTTTAATCTCTG 1847 35 100.0 38 ................................... AGAGTTTCAATATCCCGGATTCGGGATAAAAAATTCTC 1920 35 100.0 41 ................................... CTATTTAAGCAAAATAATCCCGTGGTAAATGTCACCGTGTG 1996 35 100.0 36 ................................... TATCAGTTCTTACGAAAACATGGCGACCTTTTTGAT 2067 35 100.0 34 ................................... TGTCTCCTCACTACCTAATAGTTGGTAGAAAATA 2136 35 94.3 0 T.................................A | ========== ====== ====== ====== =================================== ========================================= ================== 16 35 99.6 37 CTTTAGACTAAGAAATTAGTCGTATTAATGGAAAC # Left flank : GAGTTTCGCGCTCAAATTGTTGACTCGTTTGTGAGTTATTTAGTCAATTCTAAAATTTTATTGCTTGAAGATTTTACCTCTCCTGATGAATTGGGTGGGGTTTATCTTCAGCCGGATGCACTCAAAAAGTACCTGAAACACTGGGAGGAAAAGTTATATTCTGAAGTGACTCATCCTCAAACAGGATACAAAGTTAGTTTACGACGTTGTATCGAGTTACAAGTCCGAGAGTATATTGCGGCTTTGATGGGAGAGGTGGAAGTTTATCGCCCGATGATTTGGAAAAATTAAGGATACAGGTTAAGTTTCTGAGGGGGTCTGGGAATTGCTGAAATCCTCATTCTTGGGTTGACCCCCTCAGATCGCCCTCTCTGTATCGATTTCAAGGATCGTTTATTGTTGTTTATTGAGAATAAATAGTATGGATTGAAGTCAAAACTTGACGCCCTCAGATTTAGGGGTTTATAATCCAGTCAGAGCAAGGCTTCTATGAGCCTAGA # Right flank : ATTAAAAATAGTCTCAGCCTTGGATTTTAAAATATCCGAGGCTTTTTTAGATATAAAATCAAGAAAATATACTCAAAAAAATATTGAAAAATATATTAAAATAAGAAAGATATATAACTTATATACAAACTTATATAAACCTTAATTTTACCTAGATATAAACCTATATAAAGCTCTGCAAAAATTAGCTCAAAGGAAAAAATAAACCGTAAAAACTAATTACTGTTTACGTTTTTCCTGAGTTTACCCTAGAGTTAAATTGTGTTTATGCCAACAATTTATGTCATTCATCCAGGTTCCAGTATTGACGTGCATTCTCGTTACCTGCAAGTTTTCCATAAACAGCAGTTGTGTTTAGGGGTTCCCATTAACCGAGTTACCCAAATTATTCTGTTTGGTATTTGTAACCTCTCCCGCAAAACTCAAGTTTTAATTGCAACTCGCCAAATTCCTGTCTATTATATTAATGTTCATGGGGATCAGTTAGGAAGTTTAGAACT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTAAGAAATTAGTCGTATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 10415-10915 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734711.1 Planktothrix prolifica NIVA-CYA 406 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================== ================== 10415 36 100.0 44 .................................... TGGCTCAGGTTTTGGAGGATTGATAATGGGGTCAGTAAAATTTT 10495 36 100.0 38 .................................... TAAGATTCTTCGTATTTATCATTAGGGACACCTCTTTA 10569 36 100.0 37 .................................... TCAAAGGCATCAATAAAAATAGGGACAAAAGCCTCAA 10642 36 97.2 53 ....................A............... AGGTATAGGCAGTTGCCAAATTCCTCGATAAACCACTTTCGGTTTGCTTGGGT 10731 36 97.2 42 ....................A............... ATACGAACATTTTGGATATTGTACTGGTTTTGTTCATCAGTA 10809 36 88.9 35 .......C..G......A..A............... CAGGTAATGACAGCACAAACCAGATTAGGAAAATC 10880 36 86.1 0 ..T...................A...C...AA.... | ========== ====== ====== ====== ==================================== ===================================================== ================== 7 36 95.6 42 GTCGCCCTTTTATTGGGGTGGCGAATTAATGGAAAC # Left flank : ATGCAAACATGGCTGTACCAATTATGGAATATCTAAAACCTTTGGTGACGGGAGAGGAAAGGGTTAAATTCACGAACCTTATTAATCACCTGAATTTGATTGTGGGAGGAAGTTTGAATGTCGGAAGAATGTGTGAAAAATGGTTACTATTGTCCTTTTGTTCAAAATCCTCATCAATTGGATCAATATGTTTGTCTCAAGTGTGGAATTAAACGGGATTTAGAAAAGAAAGAAAAGTCAGAAGTGTTGGATTTTATCATCCTTTTTTTAGTGGGGATATTAATTGCAATTGTATTTTTTAGGCGTTGATGGATAGGTTTGCGAGGCTGCGGTAAAATGGCTACAATGTTGATGGTATCGTTAGGAGGCTCGATAGTCGATGGGGAAAGGGTTTGACGGGTTTTTAAAGGGTGTGATCATGGGGTTGGAGTGGTCAGATTTCCTGAGCCTCGCAAACTGGGTCTGGACATTCGGTGACATATAGGGTTTAAAATGGAGGG # Right flank : CCTAATAAAAAATCCTCGACTTAGCTTGTAGTTCTAGGGAGTTTTTATTTGTATAAATTTTAAGTTTAGGTCGTTTATTAAGTACGATCAGCTAAGTACTTGAAGATTTTGTTCNNNNNNNNNNNNNNNNNNNNTTTTTTATTGATAAATTTTAAGTTTGGCGTTTTATAAGCGATCAGCTAAGTCTTGAAGATTTTGTTCAATTAAATTAACATCAGAGTTATCATTTAATAATCCCAGAGAATGCAAAGCTTTAATAAATGGTTTTTTAACATTCAGATTATAAACCTTTTGAACATTTTGGTTTTCGTCAATATTAGTTTGGTTGTTTGGATCAATAAGATAACGAAGAATATCTTTTTTTTCTCCACCTCTCAAATTATGAACATATTGGTTTCTTAAATCTAAATCATGGGTTCTGCTATATTCACAAGACCATTCTAATAACTTCCACTCCCAATTTTCAAGATTTAGTGTTTCTTTAGCCAAACGTTGCAGCC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTTTTATTGGGGTGGCGAATTAATGGAAAC # Alternate repeat : GTCGCCCTTTTATTGGGGTGACGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 31277-31712 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734711.1 Planktothrix prolifica NIVA-CYA 406 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 31277 36 100.0 44 .................................... ATGACAATTCTTTTAGCTTCAGTAATTGAATAAGGCAGTTTCCA 31357 36 100.0 40 .................................... TACGAAATAGACGGCGGTTTGTATTTCTCCAATTGACCTT 31433 36 100.0 45 .................................... CAGTTGTGAATACTTCATGTTTATTACTTTTTAGTGTACCCATTA 31514 36 100.0 48 .................................... TAATCCAGAGATCTTTCCAGCGAGTTACTAATTGGGATGTTGTATCTT 31598 36 100.0 43 .................................... ATACTCTAAGTTAAATTGCTTTGAATACTCGCTTTTTGTAGCG 31677 36 91.7 0 ................................GT.T | ========== ====== ====== ====== ==================================== ================================================ ================== 6 36 98.6 44 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : TTTTCATTATACCCTATTTAGATGCTGAACAGCTTAATGGATTCAAAAATATTTATTCAGTTATTGCTGTATCTCCCACGAATTACGCAAATATTCCCGCTCTCGCTTAGACGCTACTTTGACAGGGGGAGGAGGGTGAGAAACCATTTTTGCCTTCTTACCCAACTTTACATCGTGCTAAATTTTGCGCGTATCTTGTCTTTACCCCATAACCTGCGGTTTTATCCCCTTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAAAGATTACTGAGTATCCGAGTTCAATAATTATTTGATGTTTTTTGCGAAGCTGAAGCTTGAATGCCTATGATATCGATTCTGCTGTTTATAGCCTCGCCTACCCTTCCTGTAAGGGTTCTGAGATTTTGATTCAGGAGTAAAATGTTGTTTCAGCCAACTGTTTTTATCAGTCTCGCAAACCTTATCTGGACAACCGATGGCGTCTGGGTTTAAAATGGGAGGA # Right flank : TTTGTTCAACATGAATTCAACAGGATTAGGAGAGTTGCTAATCCTGTTGAATTCATTGATTGCTTGATTAAGTTGTAAAACTTGACAATAAATTGAGTTATATTTTATTAACAATATTAAGTAGGTAAACTTAATATTGTTCTAAGAAAAGCCTTGTAAGTCTGGTTTTAATTGATTGATTCAACTGATTAATTAACTTATGCAATAGCGGAACATAATTCTGTAGAGTCTAAACCTTCAAGGCTTTTTAAATTCTGAAGAACTTGGAAGTTACCTGAACCAAACAAATGTAATTCTTCCTTCGCCCTCGTCATGGACACATACAGTTCCCGCCGCCCTTCTGCTTCATTGCCGACACCAAACTGTTGTACCCACAGAATCAACACCGCTTTGAACTCTAAACCCAATGAAGATTTAGCCGTAATGATTCGCACCCCAGGACGACGATTGCTATACTCTCGTTTATCCTGGTTTACCCAATAATACCCCATCCCCAACTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2159668-2160378 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734710.1 Planktothrix prolifica NIVA-CYA 406 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 2159668 37 100.0 42 ..................................... ATATAGCCGCTTAAATCCATCAAAACTGATAGGGTGACTCTT 2159747 37 100.0 35 ..................................... AAAAAGACTTCTCAAACCATTGATCTTCTATGGGT 2159819 37 100.0 35 ..................................... TTAACCGACAAGATCAACCAAGCTATTAAAGCGAT 2159891 37 100.0 37 ..................................... ATTTTAGTTACCAGATAATTTTTTACGATTAACTGAT 2159965 37 100.0 47 ..................................... TAGGAAAAGATCAATAGGCTGTAATAAAACTTTACATATCCCTAGAA 2160049 37 100.0 37 ..................................... TGGACTCACTCGCTCCTTCTACCGTTGATCGTATCTT 2160123 37 100.0 37 ..................................... AACAATGCTAGTAAACTTGTGTTAACTATGTTAGACT 2160197 37 100.0 36 ..................................... TATCAAGGCGATCACCGACAAAATTCTGATGGAAGA 2160270 37 100.0 35 ..................................... ACATGGATCAATTTTTGTAAGTCATACTCCAAAGG 2160342 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 10 37 100.0 38 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : ATTTTCAAGTTCAATCTTAAAATGCGTAGGAAGATTGAAAAAAACTAGAAAAAACGACTTAAAGTTCCTCAAATTGTAAGTTAGATCAAAATTAGATGAAATTTAACAAAACGTAGGTATTTATTTATAGTTACCTACGTTTTGTTGAAAAAACAGCTAAATTGCCAAGCACTTTTTTCAGATATTTAATTAATCTTGACCAACTCGCATAATAATCGACTTCAATCCATTCATAATATCCTCAAGAGATTCAATAATTTTTAAGGTTTCTTTTTGTTCAGTTTCATCATCTAATTTAGACAAAAATTGAAATAATTGGTTAATTCTTTCTTCTTTTCTTTTTCTTTTTTTAATTATTAACTAATAGTTTGAGCTAACTCCAGTGGGAACGCCAGGGCTGTTTCATCAGCCAAAATTTATGTACAAACAAGCTAAAGATCGTTGATATTTTCGGCTATCATTCTTTGAGTCATTGTCGAAGAATAATAGCCATTAATAAG # Right flank : GTCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGAGTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAGTAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCCCTGACCTCAAATAAAAAACCCCGCCTCCAACGGAAACAGGGTCAACGGTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGTGTTCAGACCCATAGGTAATTGTGCGTTTCAAAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCAGCAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAACACTTGTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 2 3398731-3400033 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734710.1 Planktothrix prolifica NIVA-CYA 406 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3398731 37 100.0 42 ..................................... TCCCCGTTCTTGCTCACGATGTGAGTCTTTATTGCATCCTGA 3398810 37 100.0 43 ..................................... CATTTAACTCTCCTAGGTATTCAGTGGTTTGGAGATAATAGAT 3398890 37 100.0 35 ..................................... ATAGGACAATATTCTAGGGTTACAGTATTGCCATT 3398962 37 100.0 41 ..................................... TCAAAGATATTAACCATCAAACCTTCTAAGGGTTTATCAAA 3399040 37 100.0 39 ..................................... AACTTGTGTAACGAACTAGGGTATATTGACGAGCGTAAG 3399116 37 100.0 34 ..................................... ACTATATCGCCAACGTCGAGCCATTAATCTTTGA 3399187 37 100.0 35 ..................................... GTCAAAACTGTATCAGTGTTAATATGACTATGTGA 3399259 37 100.0 38 ..................................... GACGACAGTACAGGGATGGATTAAGTTTTGCCATCAAC 3399334 37 100.0 35 ..................................... AATATCCCCGTATTCGTACCCGTATTTTGAACCAG 3399406 37 100.0 37 ..................................... AAGTAGTCTTATATCCCACTCAAGGGGATGAGTTAGA 3399480 37 100.0 37 ..................................... ACAAAATCCCACTAACAGGAATCTGTCTTGTTTGCAA 3399554 37 100.0 37 ..................................... CAAACGATTGAATGATTAATGATTAATATCTAAACAT 3399628 37 100.0 37 ..................................... GGGAGAAAAATCTATCCCCAATGGTTGAGTCTCGCAT 3399702 37 100.0 37 ..................................... GAAGAGTAAACTTTCCAGTCGCCTGTTTTATTGCCAA 3399776 37 100.0 37 ..................................... AACTCGATGACCTAAAAGGTTATTGTGAAGCTGCCCA 3399850 37 100.0 36 ..................................... CGGCGGTCGTTTTGTTACTTCGCTGTGGGTTGGCTG 3399923 37 100.0 37 ..................................... CCGCGCCTTCCTTTCTGGTCTGTGATAGTAGATTCTG 3399997 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 18 37 100.0 38 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : TGCGATCGCTTAAAATTACATCCCATCCTTGCAATTTTAACAACCGGGCGGCAGCATTTCCCGATCTTCCTAAACCAATAATATGAACTTTCGGCATAGACAATGTAATAATTCCCAGTAGGTTGTTTTTGATTCTACTCGGATATGTTTCAGTCCCGCAAGTGGGATTATTTTAATTGAAAGAAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTGCGTGGACTAATAAAAATCAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGAAAAAAAAGTTTTCGGCGAATATAATTCGCTACTACACAAACAAAGTCCACCTACGTGGACTAATAAAAATCAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGTTAAGATATCCTTTTCCCCTAGAACAGAGTGATCT # Right flank : GTCTGCCGTTTGAAACCCTTATGGGGCGGTCATTCTGGAGCCCATTTTCGTGAACCTCAAAAAATGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCACAAATATAAACTATTGATTTGTCAAGGTTCTAAGGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATCATAATAAACCGAAACCCGCCGCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACAATAGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTGGGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAACTGCTCACCGTTGGGGTAATTTCTGCTAAAGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAAGCTTTTGTTTTAGGAACTAATTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 3 3575463-3575672 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734710.1 Planktothrix prolifica NIVA-CYA 406 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 3575463 24 100.0 40 ........................ NNNNNNNNNNNNNNNNNNNNCCCCCCTTGCTAAGGGGGGG 3575527 24 100.0 37 ........................ CATTACTAAGGGGGGGGCTAGGGGGGGTAACTTCCCC 3575588 24 95.8 37 .A...................... TCTTGGTAAGGGGGGGGCTAGGGGGGGTAACTTCCCC 3575649 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 4 24 99.0 41 AGAAGAAAACCAAACATTTCCCCC # Left flank : CGATTATTCGGGATTTACCCTATGACCGAAATCATACCACAATGGCAACATTTATAATGTGTTCCAATTGTCAAAATGAATATAATCATCCTTTAAATCGTCGGTTTCACGCCCAACCTAATGCTTGTCCTGTTTGTGGGCCACAATTAGAATTATGGGATAAAAACGGTAAGGTTATTGCTAGTTTAAATCAAGCTCTCAAACAAGCGGCAGATATTATTCGTTCGGGTCAAATATTAGCGTTAAAAGGATTAGGCGGATTTCATTTAATTGTTGATGCTAGAAATGAAACCGCCGTCGAGAATTTACGTCAACGCAAACGCCGCCCCGCAAAACCTTTGGCGGTGATGTATCCTAATTTAGAACAGGTAAAACAGGATTGTTTGGTTTCGGAATTGGAAGAAAAATTATTATCTTCTCCTGCTGCTCCGATTGTTTTGTTACGTCGGATTTTTAATCAATTAAAGTCTGACCCCCCCACCCCCCCTTGCTAAGGGGGG # Right flank : CCATTACTAAGGGGGGGTTAGGGGGGGTAATTTCCCCAAAAAATCCCTATTTAGGGGTGATGTTACCCTATACCCCTATCCATCATTTATTATTAGCTCAATTGAACTTTCCTATCGTCGCAACCAGTGGAAATTTTGCAAATGAACCTATTTGTATTGATGAAGCGGAAGTGGTGACTCGTCTGAATACTATCGCGGATTTCTTCTTAGTTCATAACCGCCCGATTGTTAGACCGATTGATGATTCGATTGTTAGAATTATTGCTAATCAAGAAATGGTGTTACGTCGGGCGAGGGGTTACGCTCCTTTACCGTTTTCCCTACCTGACCCTATAGGCGCAAACATATCCCCATTATATCAAACTAACCTTAGTTTAGCACAATCTTGGGATTTGTCAATAGAAAATCCCATAAAAATTTTAGCTTTGGGCGGACATTTAAAGAGTACAATTGCGATAGCCTTCGGCTGGGCGGAGCCCATCGCATTTAATCAAAAAGCC # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAAGAAAACCAAACATTTCCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 5363282-5362005 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734710.1 Planktothrix prolifica NIVA-CYA 406 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================== ================== 5363281 36 100.0 40 .................................... TTATTAATTTCGTCATAGGGGTTTTGAACTTTCGACCGGA 5363205 36 100.0 39 .................................... AGGAAGGAAGACACTGACCAGGAATCAGTTCAATCTTAG 5363130 36 100.0 45 .................................... ACATTAAATGGAACTCTGTCAAGAAACTTTCTCGACTCTCCTATC 5363049 36 100.0 37 .................................... CCCGCCCCGTAGACACCCTGAGACATGGCTCGGAATG 5362976 36 100.0 43 .................................... CTCGGTTTAAATCAGGAGACATCAAAACTTCGATTTCAACACC 5362897 36 100.0 41 .................................... TGGCGGTCACCATGTCTAATTTAGACATAATCTTAGAGGTA 5362820 36 100.0 44 .................................... ACTGAGTACCATCAGAGGATTCACACCAGTGTCAAGTGCAGCAA 5362740 36 100.0 43 .................................... TGGATTGCTCATTGACTTAACAGCATCAATAAGCACTGCTGAA 5362661 36 100.0 35 .................................... TTCCGGCTAACAGGTGCATCAAATCATTGGCTAAT 5362590 36 100.0 47 .................................... CATTGATAATCAAGCCAACTTTCAAAGCATTCATCTTGATAATTTTT 5362507 36 100.0 44 .................................... GGGAGAGTAAACTTAACAGCACCTTTGAGAAAGGAAGGACCATC 5362427 36 100.0 42 .................................... AGTTCATACACACATGAAACTATATCCTAATCAGCCAATGGG 5362349 36 100.0 42 .................................... AGTAAAGGAATGTGAGACTTGTTAGGCGGAATTCCCCTCCCT 5362271 36 100.0 50 .................................... TCAGAATAAAAACACTATAAGAAGGATTAAACCCCTTCTTATTTTCTTTA 5362185 35 88.9 3 ........................A-...G....G. GCA TC,C,G [5362152,5362155,5362163] Deletion [5362148] 5362143 35 80.6 66 ACAA......-...............C...A..... ATTAGATTATTGTAAAAATCCTCATTGATTGGAAACGTCAACCTAATTCGTAATTCGTAATTCGTA C [5362136] 5362041 36 77.8 0 A.T.A...........A.............C..TCG | C [5362007] ========== ====== ====== ====== ==================================== ================================================================== ================== 17 36 96.9 41 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : ATTCTACTTGATGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGCCTTTCCTCGCAAAGTTAATGGATAAAGAGTTAGCTAGTTTGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGTAGTACCAAGGACGTTTATATAGTTCGTAACTTTGTGTGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGGTAAGGCTAGATAACTAGCCTTACTTTAAGAGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGTCCTCCACCTAATCGGTGGAAACCTGCTTTAGCTGCTCTTGCGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGTTATTATCTAAAGGCTTCAACAATAAAGTATATGCAGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGTGTCAGATATTGTAAGATCAATCCGTGCAGAATTGAATCTAGGGAGCAAAGTTATTGATTGCTACCTGTTCCCCAATGGCGAGA # Right flank : CACTAAAAAAAAGCCCCAGTTTTTACTAGGGCTTTAGTGGTTATAGCAGTCGCCAGACCTATTAGGACAAAGAGTGATGCAGCAAAGCTAGACGGTGAAGTCTTTTTATCCGGTGTTCCCTCCCCCCCTAGCCCCCCGTGCACGGGGGGCTAGGGGGGGCTGTTCCCTGCTATAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAAGATGAAAAGCCGAGAAAGTCTGGAGGAGGAGAGGGCAGAAAGGGATAATGGTGCAAGGAATTAGTGACAAAAAGTTAATTCAGATTTTATTGACCTTTGCCTCCAGATTTGCTTTTAGCAAAATAAGTCTGAAACATTGCCTTAGCAATAGGAGCGGCGGATTTAGATCCATAACCCCCATTTTCCACCACGACCGCGATCGCAATTTCTGGATTTTGGGCGGGGCCAAAAGCCACATATAGGGAGTGATCGGTTTGTCCCGATACCTCCGAAGTTCCGGTTTTACCC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 5363366-5364455 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734710.1 Planktothrix prolifica NIVA-CYA 406 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 5363366 36 100.0 36 .................................... TGCATATACTTTATTGTTGAAGCCTTTAGATAATAA 5363438 36 100.0 42 .................................... GCAAGAGCAGCTAAAGCAGGTTTCCACCGATTAGGTGGAGGA 5363516 36 100.0 31 .................................... TCTTAAAGTAAGGCTAGTTATCTAGCCTTAC Deletion [5363583] 5363583 36 100.0 38 .................................... ACACAAAGTTACGAACTATATAAACGTCCTTGGTACTA 5363657 36 100.0 41 .................................... AAACTAGCTAACTCTTTATCCATTAACTTTGCGAGGAAAGG 5363734 36 100.0 39 .................................... ATCAAGTAGAATCTCTGCATCAATAGCAGAAATAGAATT 5363809 36 100.0 40 .................................... AGTGGAGGATTTCAACGGTTTCGGCTGTGAATTGTTTGGT 5363885 36 100.0 36 .................................... TCGCAGTTTTTCACTGTGTCCGTCAAATTTCCTACA 5363957 36 100.0 41 .................................... AAGACCCTTATCAATTCCTTTTCCTGTAAAGTAATGTTTAA 5364034 36 100.0 42 .................................... AGCTTTGGATGCTCCATGACAAGTTCAAGTCTGTCGTCATAC 5364112 36 97.2 41 ...........C........................ CTACCAGAGGAAATCATTATGTTCAAACATCCTTTTTGTGC 5364189 36 97.2 48 ...........C........................ AGTTTTTCAGTAGTATGTCCACTATGCCACACAGTTTGAAAGTCTCGT 5364273 36 97.2 37 ...........C........................ TTGTTTCACTTGTCATTTAGAGATTCCTTTGTTGTAA 5364346 36 97.2 38 ...........C........................ TCGACCTCGATCACCACTTCAACCGGAATCGCAACAGG 5364420 36 97.2 0 ...........C........................ | ========== ====== ====== ====== ==================================== ================================================ ================== 15 36 99.1 39 CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Left flank : CCAATCAATTAATTTCCCTAGCGAGTAGGGAGGGTGTTGAAATCGAAGTTTTGATGTCTCCTGATTTAAACCGAGGTTTCCAATCAATTAATTTCCCTAGCGAGTAGGGAGCATTCCGAGCCATGTCTCAGGGTGTCTACGGGGCGGGGTTTCCAATCAATTAATTTCCCTAGCGAGTAGGGAGGATAGGAGAGTCGAGAAAGTTTCTTGACAGAGTTCCATTTAATGTGTTTCCAATCAATTAATTTCCCTAGCGAGTAGGGAGCTAAGATTGAACTGATTCCTGGTCAGTGTCTTCCTTCCTGTTTCCAATCAATTAATTTCCCTAGCGAGTAGGGAGTCCGGTCGAAAGTTCAAAACCCCTATGACGAAATTAATAAGTTTCCAATCAATTAATTTCCCTAGCGAGTAGGGAGTCTCGCCATTGGGGAACAGGTAGCAATCAATAACTTTGCTCCCTAGATTCAATTCTGCACGGATTGATCTTACAATATCTGACA # Right flank : CGTGAAGACAAAATTAGTCGAAGTTTTTTATTAATGTGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATCTAACTTTGGGGGACACCTCTACCGCAAGAATACTGTCCCCAGCCTGACGCTCTAGCAGTAAAGGCAATTCCCCAGCCGGGGTTACGGCAAATTCCTTTGTCATTACCTAGAAATAGGTAGTTAAGACAAAATTAGTCGAAGTCTTTTATTAATGCGGAAATCGAAAAGGCTTCGACTCCACTCGACTCCGCAAATAGGAAAAAATTAGAGACTTCCGTAGCGACAAAATCTCTAACTTTTCAACTTTTGAAAAACTCCAAAAACACCCTTTTAAAACTCAAACAAACTTACTTTCCCCACTCGCTAGGAAAATTAATTCAATCCGATCGCACAAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATAGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTAACAGAAAAGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //