Array 1 55224-56701 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGR01000027.1 Parabacteroides sp. AF18-52 AF18-52.Scaf27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 55224 32 100.0 34 ................................ TTGGTTATCAGTTGGTTTTGTTGCTTAACCTTTA 55290 32 100.0 33 ................................ CCAGTTAAAGATATTGAAAAACATTTGTAAAGA 55355 32 100.0 34 ................................ CGTATATTTGCATTATCAAATTAACCGAGCGGCG 55421 32 100.0 35 ................................ AAAATAGGGTTGGAAGGATTGTTAAAAGAAGAACC 55488 32 100.0 35 ................................ CTTCTTAAATTGCAGCAAGGTGCAGATAAATTCAA 55555 32 100.0 34 ................................ AGCTTAGAAGGAAGGGGAGGAATGGTACAACGAT 55621 32 100.0 34 ................................ TACTATCGACAAATAATTAAACCTTGATTTTCTT 55687 32 100.0 35 ................................ CAGCTAATGAGGATCTACCAACGATCAATAACCAA 55754 32 100.0 34 ................................ CGGAAGATTGAACCTACATAAATGTCCTTTAGAA 55820 32 100.0 34 ................................ TGGATGAGTTAAGCAGCTTTAAGTCTCCGAAAGC 55886 32 100.0 28 ................................ ACCGGAGTTGGTTAAGCGTACTGTTTGT 55946 32 100.0 34 ................................ TCATAAGACGTACAGGAAAATAAGTCAGCCGTAT 56012 32 100.0 34 ................................ ATCAGAAGAACTGAAAGAAAGACGAATAGATTTG 56078 32 100.0 34 ................................ TAATCAAGGCAAATACAAACAGCGAGTGGGATTG 56144 32 100.0 34 ................................ ATCCAATTTAGCTGGTGTCTTAACAAAAAAGCTT 56210 32 100.0 33 ................................ TGAGGATAGCGATGGATTGGATGATGATGAGCC 56275 32 96.9 33 .......................A........ TCGGAAGCAAAAAGGGACAAGGCCCCGGTTACA 56340 32 93.8 34 .......................AG....... TTAACTACTGACCAGGTGGGGACTTTAACTTACG 56406 31 81.2 33 ......-.....GTA........AG....... GGACTCATACGATGATGCCCTGGTTAATACCGG A [56417] 56471 31 84.4 34 ......-.....GTA.........G....... GTACAGTGGGACACCCGTGAGATCGATATGGCAA A [56482] 56537 31 87.5 35 ......-......TA.........G....... TCAAGAGAGACAAGATTTTGCCAAGTACCGGATGG A [56548] 56604 31 87.5 34 ......-......TA........A........ CCTACATACCCTGTTGCTACAACTGATCCAGTGA A [56615] 56670 32 93.8 0 ....C.............G............. | ========== ====== ====== ====== ================================ =================================== ================== 23 32 96.7 34 GTCGTATCCTTTACGGGTACGTGGATTGAAAC # Left flank : CCTCGTTCAGATCACGTTTACCAAAAGCCTGCGAAGTCATCCCACTCGTCCCCATCCGCAGGAAACCAAACAACCAATAGATTATATTAAACAGCATCCCTCCCACTGCGATCGCTCCGATATAGGAAGCCGATCCCAAATGCCCCACAATGGCGACATCGATCAATCCCAATAGAGGAACGGTTATATTTGAAACGATAGAAGGTATTGCTAGTTGCAGGATTTTTTTGTTCATGTTATTATATCCAAAAGTTTATTCTTAAATTTGTGAGCAAAGTTACGTATTACTTTATATATAACATTATAATGCAACAATGTACCAATAACAGATAAAACGCGAACCATAAGTGATATCAAAAACACAGGACATTCGCACTCCCTGTAATACAGATGTTTACATTTTTATTAATAATAATACAGACATTATTTATTGTCTTATATCATTATTCGCAGAATCATTCGCCGAAAATGTTATAAATAAAGCTTTTAATAAACATGCA # Right flank : CACTAAGATAATAGTTTGAATAGATTAAGCCGGAATGTTGAACTCTTTCGGGTGCATGAATAATCCAGCATACTTTTAAAATTAAGGGCTGGAAATAACTATTTATTGAAAAATAAAATGTAGCTTTGTACTTATAGGGGAATTAATAAAGTGCTGTTTTTCAAAGCACAGACACCCATATTTCAATTAACCAACTATTAATCTGACAATTATGAAATATCATAATAAAGAATATTGTTTAGATGTTGAAGGTAAGCTTGCCTGTTTTACCCGTCCTGAAATGAAGATCGAGCGAGTCAGTTATGATGTTATTACACCTTCTGCTGCACGTGCTATCTTTGAAGCCATATTCTGGAAACCAGCCATTCGATGGAATATAACACGGATAGAAGTTTTGAAACCAATAAAATGGATTTCTTTTAAAAGAAATGAAGTAGGGAGTTTGATGAGTCCACGTACTTCCGACTTATTCATAGAAGACAACCGACAACAAAAGTCCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATCCTTTACGGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 157104-156549 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGR01000012.1 Parabacteroides sp. AF18-52 AF18-52.Scaf12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 157103 32 96.9 32 .......................T........ ACAAGCGCAAGCCATATCATCAATACTATCCT 157039 32 100.0 33 ................................ TCTGTCGTCTATAGATGAGATTGACAACTATGA 156974 32 100.0 35 ................................ AAATATTTCTGTTGGTGCTTCTAAGTCTTCGGAAC 156907 32 96.9 34 ........................A....... CGGGATATCAAATAAGAGTGAGTTTTTCGCAAAG 156841 31 84.4 33 ......T...-..CG.........A....... CAGAAAAGAAGATTACAGCAATCGTTGGAGCAA T [156835] 156776 31 87.5 34 ..........-..CG.........A....... CATATTCCGTAAAGTGCCTTTTCTACAGCCGCTC T [156771] 156710 31 84.4 33 ..........C-.CG................T CTGTAAGTCGAGTACAGCGTGGCCGATCTTGTC T [156704] 156645 32 96.9 33 ....................A........... ATAGTATTTTGGAAAGCAGGTTCTTACGCATGA 156580 32 90.6 0 ............G...........A...C... | ========== ====== ====== ====== ================================ =================================== ================== 9 32 93.1 34 GTCGTACCTTATATAGGTACGTGGGTTGAAAC # Left flank : GGCGCTGGCCGATCCCCGACCGATGAGCTTGAAAGAAAAACAGCGCATGACACAGTTTACTTTACGCCCCCTCCGTCATT # Right flank : TTTGTCTAATACGATCGTAAGATACGCGAGGTAGGTCGTACCTCATGCAGGTATATAGATTTCTCTGCGAGAAGGTTCTCGCAGAGAAATCCAATCCCATTTACACAATCGCCCTAATTTTATTCTATCAGCAACAGTTCTTCCGCCCAAGCCCCATCCAATACCAGTCCTGCCTGCGGATCATAGCTACTCGGATCCTCCAAAATGAAAACGCCTGAATATTCGATAACCTTACCACTCCGTACCAGCTCATCAAAGTCCCACTTTTTCACAGATACACTATATTGCTGTAACTTGCGTAATAGCCAAAATTCCGGACCTTTCTCTTTCAATTCTCTAATAAGAGCTGCACCATCACCATAATTGACCAGGATGGAAACAGAGTTCTTATCATCAATCAGGCAGAACTTCTCGGCAGCAGTTGCAAACATAAAGTTCATTTCTGCAAAACCTTTATATAACAAACCTTTTATATCTGCTTTATCAAAGGTATTACAACC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 32869-30570 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGR01000015.1 Parabacteroides sp. AF18-52 AF18-52.Scaf15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 32868 29 100.0 34 ............................. AAAGGCAGCCATCCGTGAATTGGTGAATGAGCTG 32805 29 100.0 35 ............................. TTGTTATGGGTTGGTAAAAATCAAACTAGAATAGC 32741 29 100.0 35 ............................. ATAATCACCCATATCAATAAGCACATTCTTTTTCT 32677 29 100.0 37 ............................. TTTGCAGCCGCTCAAACGTTGTTTCTTTTGAAATCAT 32611 29 100.0 34 ............................. TTTTAAGTATATCCGTTTCCAGATCAACGCTTAA 32548 29 100.0 38 ............................. CTAGCATCTGTTGACAATAATACCCATTCACCTACAAA 32481 29 100.0 35 ............................. AAATATGGCTAGTCCATGAGGCGCCATTGACTTTT 32417 29 100.0 35 ............................. ATTCTTAACAACAAGTCTTTTGATTGTCCTGTACA 32353 29 100.0 36 ............................. TAATTAAAGATTGCTCTTATATTGCGCAGATGGATT 32288 29 100.0 35 ............................. TCATGTGGGAAATAGCAGGTTAGCTCTTTCCTCGT 32224 29 100.0 34 ............................. ATTAAGTTGCTGGGCATTGCGGATAAACCTGCTG 32161 29 100.0 36 ............................. GAAACAGTGTCCTGATCGTCCCCTGCAAGTGGCTCA 32096 29 100.0 35 ............................. TTGAAGAAGAATGGAAGATCACAGCCCTGGATAAC 32032 29 100.0 38 ............................. AATGTAATACTTAATTCCGAACTACAAAACTTTTGTAC 31965 29 100.0 35 ............................. AGGATTAAACCTAATACGATTAATAATGCACCTAG 31901 29 100.0 35 ............................. ATAAATATGCAAGTACAACCTTTGCATCTTTGCCA 31837 29 100.0 34 ............................. CTGGAATAATCACTTTACCGGCTACCATCGTCGA 31774 29 100.0 35 ............................. GAACATGAGGTTGTAAAAGTGGCAGCCGATAAACG 31710 29 100.0 37 ............................. CACTTTTGGTGCAGTCTGATTGGAAAAGATTTAGATG 31644 29 100.0 36 ............................. TGACTCAAAGACAGCTTGCTAACGAGATAGGGGTTA 31579 29 100.0 36 ............................. TATATTTGTATCAAATAACAGAACAATGAGGATTGT 31514 29 100.0 37 ............................. TTTGACTATAGCCGTAGGGTCGGAACTGTATCCAAAA 31448 29 100.0 35 ............................. TATCGTTTATGCAGTTTATGTTCGCTGACACAATG 31384 29 100.0 36 ............................. GAACGAAGACCTTCAACAACAGATTAAAGCTGCCCC 31319 29 100.0 36 ............................. AGGAACTATCAAATATGAAGGATTTTATTTTTTACC 31254 29 100.0 37 ............................. GCGCATGGGACCTACCGAACGTTTGGTAAACGTTTTC 31188 29 100.0 37 ............................. TGTTAAATCCTGGCTTGCATTACCGTCAGCGATCTCG 31122 29 100.0 35 ............................. TAGTCTTCGGCAGACTGTTTGGTTTTCGCTGCAAT 31058 29 100.0 37 ............................. CTCAATATGTCCGGTTGGTTGTGGTGTAACCGTTGTA 30992 29 100.0 38 ............................. TGGGAAAGCGGCGCGGGGTAAGTTATCAGAAGCGTCTA 30925 29 100.0 38 ............................. ATGACAGCTCCGATCATACCGGCATACTTTCCGATCAG 30858 29 100.0 35 ............................. AATAATAAAAAAGATGTATGTAGATTGGTTGAAAA 30794 29 100.0 37 ............................. CAAAAGAGATAAACAGAAACTTCAAAATCAAGGTAAT 30728 29 96.6 36 ...............A............. AGTAGCTGACCTAGTAACAAACGGAAACTACGGTTT 30663 29 96.6 36 ...............A............. AACCGTACAATTGCATGACGGTTCAAAATTGCAGCT 30598 29 79.3 0 ...............A.......AC.GGG | ========== ====== ====== ====== ============================= ====================================== ================== 36 29 99.2 36 CTATAAATAGAACCTGACGGAATTGAAAC # Left flank : AATGTGGTGGTAGATGTATATTATTCTTGTATATGATATGGGAGAGAAAAGAGTTGCAAAAATGCTTCGTCTTTGTCGAAAATATTTAAATTGGATTCAGAATTCTGTATTTGAAGGAGAATTGAGCGATGTTAAATTGAAAGAACTGAAGATTCAGGCTGGAGAAATAATGGATAAGAATGAGGATAGCTTAATTATTTTTTCAAATCGCTGGGATAAGTGGATGGATCGGGAAGTGATTGGAAAAGAGCGATCTAGTATTGATCAGTTTTTATGAAAGTTGTCAATGTCAGTTTTTATGAGTAAAAAGTGAGTATATAAAACTTCTCTGTGTTTCAAGACGTTCTTTGACATGCTGAAAATCAGATCAATAATATAAGTTGTCGATTCCCTGTTATTTTTATATAATTGGGGGTCGACAACTTTATTTACAAAAAAATGCCAGGTGGGTATCGTGAAAAGCCTTGTATTTTCGTTGATAATAGCTATTTTTGTAACGG # Right flank : TATGGATTGATGTGTCAAAACGTCTATCTTCTATAAATTGTCTAGTCCTAAATAACCGTTACAGTTATTGGACAAAAATAATACATTTGGCAGGGGCTATCCGACTTTGGACAGCCCCTTTTTTTGTTTAGCCACGAGGTTATATGACTGGTAGCCGATAAAATCTGACAATGTGGATTTTNNNNNNNNNNCTGGTAGCCGATAAAATCTGACAATGTGGATTTTTAGTTTTAGAGATAAAAATTATTTTAAATCTAATTTTCTTTAGTCTTCTTAGAACTATGGTGAGTTAATACTTGTTATATATATAGCAAGGGTATGCTTTTGACAATATGTCAGCACTCATGTGTTAAAACGGATGTATGGAGTATATTTTGTTGGAAATTTGTTTGGTATTAATGTTATAATCTCTATATTTGCATTTAACAAGTGTAAAAAACAGCATAGTTCTAAGAAGACTAAGTCGTTTCCTTTATGCAAAAACACAATACTTAACGCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATAAATAGAACCTGACGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //