Array 1 2221361-2222417 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017308.1 Leptolyngbya sp. NIES-3755 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 2221361 37 100.0 35 ..................................... TGCATTCGAGCAGATGGGCAACGAATTCTTGAATT 2221433 37 100.0 36 ..................................... CTAAGATACGTGAAATCTTGAACACACACTGTGTTA 2221506 37 100.0 35 ..................................... CGATGTCAATACTCTAGGCGGTTATCTCGCTAATT 2221578 37 100.0 36 ..................................... CATTAATCGAACCGTCAACGGGTCTCGAAGGAATGA 2221651 37 100.0 46 ..................................... CTTTTAATGATGGTGACGGATTAGTTAGAAACGGAAACGTACTAAA 2221734 37 100.0 36 ..................................... CAATCGAATGAAAATTATTTTTCTTCAAGTTCGCTG 2221807 37 100.0 34 ..................................... TTACTGGTTGTGTACATGTCAGATATGCGGCAAA 2221878 37 100.0 36 ..................................... ATCGATTATTTCCTGATAACGTTGTTTACACTAGCA 2221951 37 100.0 33 ..................................... ACTAGAGCAAAACTGGACAAGGCGAAACGAGAT 2222021 37 100.0 36 ..................................... ATATGGGACGTTACCCCAATGACAACGGAGACTCAA 2222094 37 100.0 36 ..................................... CAGGGATGAATGAATCACTTTCGATTTCAGCGTTGA 2222167 37 100.0 36 ..................................... AGATTCTTCTGTCCCGTATTCGCAACCATAGAAACT 2222240 37 100.0 35 ..................................... ATAAAAATGCACCCGTTTGTCTTGAGAGTTGCGAA 2222312 37 97.3 32 A.................................... TCTTGTTTGTATCCGATTCTTTGGAAGCTCGA 2222381 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 15 37 99.8 36 CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC # Left flank : ATCGCTGATTCCGTTTCACATTTGGAACGATCGCTTTGTCGAAGAGCGGCTGAAATGGAAACCTCGATCGCCGTTATATTTACTGTTATTAAAAGTATTTCGTTTACCGCAAACTCAAACGATTCCGTATCGAGAATCTTATGGCGGCTGTCGATCGTGGATTGAGATTGATGAGATCTCGATCGAGAATGCGATTCCGGTATTGACTGAAGCGGAGTATCAGGAACGAGTTCGGCAGATTCGAGAGATTGCTTTGGAAGGTTCGATCGTGCGTTGATTTTTGCTGATTGCTCTATAATGAAGCAAGTTTTTGGCAAACCGAAGCGGGGGCGAAATTCCTGGGAGGTTCGCCAAATCGCTAGAACCAAGACAATTCAATAGGTTTAAGGGTTGATATTATTGCACCAACCGTAGAAATAAGGGCTGAAATCAAGGTTTCAGATCACCTTTGCCAAAAACGGTTGTAGAATCCTTGTTCAGTAAGGGTTCTGAGGCGCGGG # Right flank : CTAATCTGTGATCGTATTCATGACATCGCTGAGTTGGAACTATCAACAGAGCGATTACGTTTAGAACTCCGGACATTTCTTGACCAATAACGAAGGAGCTTCGATCCAAAACTTCTTATGCGATGTCTTAGGTCAATAGAAATCGGGATGATAGGATTTGAACCTACGACCCCCTCGTCCCGAACGAGGTGCGCTACCAAGCTGCGCTACATCCCGGAAAGCATTTTTGCAATGCGTATTCCATATTAGATCAAGTTTGCATTTGCGTCGAGTCATTTGCTGAAAATCCCCAACTTGTTAAGATAGACCATGCAAAACGCGATCGCACATAGGTAAAACCGTGGTTGTTAAACCGGACTGGCTACGAGTCAAAGCTCCTCAGTGGGAGCGAGTCGGCAACGTCAAAGAAGTCTTACGAGATCTCGCACTCAATACCGTGTGCGAAGAAGCTTCCTGTCCAAATATTGGGGAGTGCTTCAGTAACGGAACGGCGACGTTTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCGCGCCTGCTAATCCCGGCAACGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 2341404-2342388 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017308.1 Leptolyngbya sp. NIES-3755 DNA, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2341404 37 100.0 39 ..................................... TTTCGATCGGGTCGTAGTGCGAACACTTGCCCTCGATCG 2341480 37 100.0 36 ..................................... CTTTGTTCCTTGGACTTGCCCGATGACTGCAAAAAT 2341553 37 100.0 35 ..................................... AATTCCTTGAGATGCTGGATGATTGGAGGCATGAT 2341625 37 100.0 34 ..................................... CCTCAACGAGTTCAGACAGATAGGATAACGCCAT 2341696 37 100.0 36 ..................................... CCGAAAAAGTCCGAAGTGAACTGATTATTGCTCCAG 2341769 37 100.0 34 ..................................... GATCCGCACTGGCGCGAAGCTTGCAATAACTCGC 2341840 37 100.0 36 ..................................... CGATCGCTCGGATGCTGATGAAGTGACCGTTCTGAT 2341913 37 100.0 34 ..................................... GAATACTTGCCCACTCGTAGGAAACTTTCTCTAG 2341984 37 100.0 39 ..................................... TTCATTGTGTTAGTCAGTTTCGACACCGATACATCAGGT 2342060 37 100.0 36 ..................................... TGGCAATGTTTGAGGTGGAACTGATTCCCGTAGATG 2342133 37 100.0 38 ..................................... AGCGCTCCGATGTCAGCTGGCAGAATTCCAAAGAATGC 2342208 37 100.0 34 ..................................... TAATAACGAACTCTGGACAAGTGAAGAAGCGAGT 2342279 37 100.0 36 ..................................... GCGAAATCATTTCCCCTAGTTACTGTAAGCTTCGTG 2342352 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 100.0 36 CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC # Left flank : CGGAACGGTGATTTTTGCTGGCTGGTATGGTGGTTATGGAAATTCGATTATTCTTGATCACGGCAATGGAATTACGACGATGTATGCCCATGCTCAAGAACTATATGTATCTGAAGGTGAAACGGTAGAGCGTGGGAAAGCGATCGCGGCTACGGGTTCTACTGGACTATCGACTGGACCTCATTTGCATTTTGAAGTGCGTGAGAATGGTGAGCCTGTTGATCCGATGAACTATCTATAAGAAGTGCGATCGATTCTGGTTGGAAGAACTGCATCAAGTTTCTGCGATCGTTCTATAATGAGGCAAGTTTTTGGCAAACCGAAGCGGGGGCAAAATCCCTGGGAGGTTCGCCAAATCGCTGGAACCAAGACAATTCAATAGTTTTGAGGATCGGTAAGAAAGCGTCGATCGTAGAATAAAGGCTGAGATCATGGTTTCAGATGACCTTTGCCAAAAACGGCTGTAGAATCCTTGTTCAGTAAGGGTTCTGGGGCGCGGA # Right flank : CATATTCTTGCCGTCGCTGCCCGACTTTGCGATCGACACTTTCGCACCTACTAATCTTGCCAGGGATTATACTTCTAGAATATTTCGTACTTCGGCTCAATCATGTCAGAAGAATCACAAAGCAATTTAGAAGATCGAATCATTGATCTAGAGTCGAGTATGGGCGATGTTAAATCTGCAATCAATCAGTTAATTGACTACTCTGTGCAGAATAATGAACGCCTAACTAATTCAGTCGATCAACTCGCTCAAGTCGTGCAGACCCTCGCGGAAGGAACAAGTCAGCAAGTCGATCGTGTCACTCAGCGACTCAATCAACTCACCGAAACAACGCAGACTTTAGCGGAGTCCGTTGCATCTGACCGTGAGAACACTCAGCGGAGACTGAATCAGCTAGAGGAATCAAACCGCTCGATCCAAGCTGCCGTCGATCGCTTCGATCAACTTCTAGATTACCTCATTCGTCGGGATGGTGATCGTACTTGAATACCCGCCTTTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCGCACCTACTAATCCCGGCAACGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 3147939-3148248 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017308.1 Leptolyngbya sp. NIES-3755 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================= ================== 3147939 25 76.0 49 A....TG..AG..G........... AATCGGCGCAAGCAAGTACGCTGACACTTGCCCAAGTCGAATCGGCTTC 3148013 25 100.0 46 ......................... GATCGACGCAAACTCCATTCATCCCCGATCTTTAGATGCCTTACGA 3148084 25 92.0 48 .......................TC GATCGGCGTAAGGACTCCCGATACTGGAGTGATTATGGATGGATTTAA 3148157 25 100.0 38 ......................... GATCGATGTAAGCGATTTCAAATGGTTTGCATGAAGAA 3148220 25 88.0 0 .........G....T....T..... | GCAG [3148237] ========== ====== ====== ====== ========================= ================================================= ================== 5 25 91.2 45 GTTTCCAACTAATCCGATCGCAAAG # Left flank : AGCCCTAAACTGAGTACCAAATGAATGGTGCGACTGTTAGCTGCACCATTCATTTGTCTGACCTTTCCGGTTCCAGAATCTTTGAGGTTTGTGTGTGTGAGAGCCAGATGAAAGAGTCTATACTCCCAGGTCACACACACTTTGCTTAAGGAAAAGAAGGTGTGCGATCGAAGAAATGTGCCACAAGTTCAGCAACTGGCATATTTATCGATGTTGCCCCCGATTGGCTATTTCAATTTTCGGAATCAACGAAAATGCACTGTCTGGATATTGAGATGAATTTTCTGTATGAATCAAGAAAGTTTGCAGGCTGCTCAGGTGCCATGCAGGAAACGGTTCAGGAAGCAGGCGAAGCGTTCAATGTTAAAACGTTGAATAGTTGAACACATCCATGACTGGTTGCATTAGTTTGGTCAACTCAACCTAAATCATGAGCGCTGGCAAATTCTACAGATTTTGCAGATTCTCGTAGTAGAAACCGATCGCATTTGTCATTTTTG # Right flank : GTTCCTCAGCAATTCGCCGCACCTCTCCGATCGGTAAATCGACATCCTCAGCAACATTTTCAATGCTGTAACCGCGCCTGAGTAGACGGGCTGCCGTTTTGCGCTTGGTTTGATGTTCCAAATCCTGATAAATTCGGGTCTCTTCAAGGTTATGTCCGAGCATCGCTTCTACCTCTTCGCGGATTAACTGGGAGAATTTATAGACGGCAATTGTGGTGATGCCTTCAATTATCATCGGGTTTTTCAAAAAAGAAGCTCGATCGATTGATCGAGCTTTGAAGAGAATGCGAATTGGTCATCAAATAGAAACAAAGTGAAGATTGGGAACTCGATACATTGGTTTTGTCGGTTTCTCAGTAGTGATGAATTCGTCTGCTTTGCAAGAGATTGCGGCGGCAATATGGAGCGCATCTATACTCGCTAAGCCATAAGTGCAAGCAATTTGACGCGCCTCTTGAAGCAAGTTTTCGAGGTTGATTTCCCAAGGGCTGACGGTTGCA # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCGATCGCAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 3149327-3149651 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017308.1 Leptolyngbya sp. NIES-3755 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3149327 37 97.3 33 ..............T...................... TAGATATGGCTGTGAAAGAGAAGAAAACAATTG 3149397 37 100.0 35 ..................................... CTAACTATTCCGCTGAGTTAACTCAGCGCTATATG 3149469 37 100.0 38 ..................................... GAGCCGGTTTGCTTACTGAAAATGATTTGTCCCAGTAC 3149544 37 100.0 35 ..................................... GAATTCGAGATTTGGTCAAATCCTGACTATCTTCA 3149616 36 81.1 0 ......................G.-A......T.TCT | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 95.7 36 GTTTCCAACTAATCCGATCGCAAAGGATCGGCGCAAG # Left flank : GACTAGATACGAATTCTCGATCGATATCTCCCAAAATACTGAGTGCGAGGTCTGAATCGATCGGGTTGCCGCGTGCTGCAAGAATCAGAACGCCTGCATCTAGGAATGTCCGTTTTATTCGTCCCAAGGGGTCACTCCTCCACGACGTTCGGCGATTTCTCGATCGAGTTCTTCTCGGCTGAGTAGGGGTTCTCCGGATGCGACGATTTGAGCGCGAAGCTCACGGAGTTTTTTGCCAAGGGGACTGATTTCGGGAGGGGTCGAGGATTGAGGTTTGGGCAATGCGTTGACGAATTCCCAGACTTGCTGCTGTTGGTCTGGGGTGAGTTCGCGTAGTTTTTGAATGACTAATTCTTCGGTGGTCATGCGATTGCCCTCGATCGAACTTTGTTTCTATTTTACAAAAAAGCTTGATCTGGTTGATCAAGCTTTGAAGAGAACGCGATCGCAAACGATCGGTGCAAGCTAGAAGCAAAGGACTTTCCAGAAATTCCGAATTT # Right flank : TCTAATCATCACCCCAAAGTTGCTGAAATCCAAACGGTTCCCCCTGCAAAAACTGTAAAAACTGCTCACACTCTCGCGAATCATCCGGGAAAATCGTCAGCAATTCCAAAAACTCACTCGTGACCTTCGGTTTCGGCTTCTCCTCTGGATGTTGCCGATTCCCCACCAGCTTCACCCGTGGATACATCCGATGCCACAATCGTCCAATCTGCCCCACCTTCCCAGTCAATCCCGCCGCATAAATCGTTCCTCCTGGCTGCACCCTTGCAATTCGCTCCTGATATGCCCCATGAAACCAGCGAATCGCCTCACTCTCGTCCTGATTCGCCGCCAACCGTCCCCACACCTGAACCCGCTGCGGATGCCAAGCCTCGCGCCAGTCGGTTGAATTTGCTGGATTTGGAGTGATTTGCTGAAGTCGCATCCATGCCGCTGCGGTGTCTCGTACCTTGTCGATGAATGTTCCTAGCCCAGACAGCGATCGAACTTGTACATCGCGC # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCGATCGCAAAGGATCGGCGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 5 3155691-3155439 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017308.1 Leptolyngbya sp. NIES-3755 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3155690 36 94.4 34 .............G.....G................ CCAAAACATTCAAACATCACTGGAAACTGTTAGC 3155620 36 100.0 38 .................................... GCTCTTAACTTCGTCAAGCCCCACTTTGAGCACGTACC 3155546 36 100.0 36 .................................... GCTTCAACCATACATCTCTGCAACGATTCGTGTTTG 3155474 36 77.8 0 ...................G..TCC......AAAC. | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 93.0 36 GTTTCCAACTAATCCGATCTCAAAGGATCGGCGCAA # Left flank : TATCCAGTAAGTACATGATCGATGCTAGAACTCCGACTGCGATCGAGTTTCTTGCACCAAGCGAAGACAGTCTTCTAGATCATTGCCTTGCCATGTCCCGACAAATTTGGAGAGGTCTTCGCCTTTTGTTTCTTGCCGTAAGGGTGCAGCACGGCGGAGAGGAAGCTGTTTCACGTCTGCTAGAAATGTGCTAAATGCTGCTTTTGGATCGTTCACCTGCTCTAAGTTGGAATTCTCGGCTGGATCTGATGAGGCTTGATCTGGGGATGCCTGCGCTACGGACTTTGTTTTGAGAAAGCGAATGAAGTCGATCGCTTCTGCGAGAACTTCGTCAGATGCAGTTTCGATTTCTTGCAGCAGGATGTCTCTGTATGTCATCAATCCATTTCTCTGAGCGCTTGTCTCGAATCTTAGCAAAAAGCGCGATCGAGTGCTGAAATTACTGCGATCGCGCCTCATTAGAAAACGCTCGATTCGACGCTGAGACCGATGCTGGATTC # Right flank : TAGGCAAAATACCGATCGCCTTCAGTAAATTCTACGCAAAATTATTGATCTTTCAGGAATTAATTGCAACACCTCCGTATTAGTAATCGAATGACTTTCCTCGCGCCCCATGACTGAATTGCCCCCAATCTACACCGCGATCACCTTCGCCCCAATCCAAGGCTTCATCGAAAACTCTCGTAAACTCCGTGACCTCTACGGCAGTTCTTACCTGTTATCGTTTCTCTCGTGGTCAGTCTGTCACGCCGCCGAAACCCAACACTTCTGCATCATTTCCCCCGCGCTTACGAACGTCGCCCAAGGACTCCCCAACGTCATCTTAATCAAAGGGAAATTCGAGGCAGAAACGGCTCAAACCGCGTTTAATCAAGCCTGGAGATGTGTAGTCGAAACTTGCCGTCAGTGGATCGAAACCAAACTCGTTACTGCTCCGAATGGCAAGCATTGGCACTACCACTGGCAACGCGATTGGAGCCTGTGGGCGAACTATGCTTGGGAAT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCGATCTCAAAGGATCGGCGCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 6 3479425-3479608 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017308.1 Leptolyngbya sp. NIES-3755 DNA, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3479425 37 100.0 36 ..................................... GATCCTGAAAAGTTACAGAAACTTTTAACGCTCGAA 3479498 37 100.0 37 ..................................... AGTCGAAGCAATTTATATAAGCGGAATCAACGCTCTG 3479572 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 100.0 37 CTTTCGCGACTGCTAATCCCGGCAACGGGACTGAAAC # Left flank : ACCCTATGCCTACCCTGTTTTACTTATTATTTACGATTTACCAGATGATAAAGCGGCGAATAAGCGGCGGACTCGATTGCATAAGCTATTGTCGGGGTATGGGACTTGGACGCAGTACAGTGTGTTTGAGTGTTTTTTGAGCGCGGTGCAGTTCGCGAAGCTTCAGGTTCAGATTGAGCGATTGATTCAGCCAGATGTGGATGCGGTGCGAATTTATCTGCTGGATGCGGGAGCGGTGAAACGGACGATCGCGTATGGTTCGGAAAAGCCGCGTCAGATTTCTGCGATCGTTCTATAATGAGTCAAGTTTTTGGCAAACCGAAGCGGGGGCAAAATCCCTGGGAGGTTCGCCAAATCACTAGAACCAAGACAACTCAATAGGTTTGAGGATCGATGTTATTGAACCAACCGTAGAAATAAGGGCTGAAATCAAGGTTTCAGATCACCTTTGCCAAAAACGGTTGTAGAATCCTTGTTCAGTAAGGGTTCTGAGGCGCGGA # Right flank : CGATCCGAATTCCTATCAGTTTCCGCAAGGATTTTATCGAACCGATCGACTAAACAAATCCCATCAACAGGACTAGAACTTGAGCAAGCCTTATCTGCGAACCGTTGAATCCTCCTGAATCGGAGGCACGATCGCATTAACCGGAAGACCAAACACAAACAATCGCTGAGGAATCTCTCCTACTCCAATCGGTGCAATCTGAGCGACTTCCGCATCACTCGACCACATGACCAATGCAACACTAAGCGGCACTTGTAGAAACAAATTACTACCCAGAAACCCGATCGCAGCGACAATCAATCCCAATCCATGCCCCGAAATTGGAGTAATCCCTTCTGCGATAGGAGCGATCGCATAAATCTGTTTCAACACCAAAAACAGCACAACCGCCGCAACCCCAACTGCAACCGGATTCCGACGCACTAAAAACATTGCCAAAACTTTTCTCTGAGCTTCCGTCAATCGTTCAGGACGCAACGCCACCGCTAACAAACTGTAAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCGCGACTGCTAATCCCGGCAACGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //