Array 1 381392-381883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRU010000003.1 Listeria booriae strain FSL L7-1427 NODE_3_length_666684_cov_25.464509, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 381392 30 100.0 36 .............................. TGATCCATCGTTGGATGGGGAGCAGGCTGCTATGAT 381458 30 100.0 36 .............................. CCGCTGCGTGCCCATTCTCCCATTCACAAAACTGTT 381524 30 100.0 36 .............................. ATCTGGAGAACCCGTTTAGCGATGAGAATCAGGTTC 381590 30 100.0 36 .............................. CATGCCGACCATTGACGGATAAGGAAGTAGAAAACA 381656 30 100.0 36 .............................. TTCCAGCAGAAACGTTTCAGGCGACTTACCGACATC 381722 30 100.0 36 .............................. TTAATTTTAGTTGCCAGCTTGTGTTTTCTTGCCATT 381788 30 100.0 36 .............................. AAGGACAAAGGCCAAACGGTACACTTTACAAACCCG 381854 30 76.7 0 A......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 97.1 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATTTTGATTTATGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACTCATGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGGTGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGGTTCAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGAGAATTCAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCAATCTGTTTAGCTACGATTGCTTGGCAGGCAATCTCTGTCTACCAAGCAATGTTCGTAGCCAGTATACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCATTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATTGTTGCGCGAAATCGTAATAAGGACGGCTTGCTGTATGTTATTTTTCTCCCTAAAATGGTTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTGTACTTTTGTCCGATATGTTGGAGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATGTCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCTGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 941794-940057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRU010000001.1 Listeria booriae strain FSL L7-1427 NODE_1_length_1332780_cov_22.057048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 941793 30 100.0 37 .............................. CTGAGCGACACAGGAACGCGCATGGCAGACGATATTA 941726 30 100.0 36 .............................. TTCTATAGCGTCCTATACATACCTATTGACGCTTAA 941660 30 100.0 35 .............................. TTGTGCGGGTGGCATCTCGCGTTCATACCACTTAG 941595 30 100.0 35 .............................. ATCCAAAATCTACACTCACTAATTAATTTTACTCA 941530 30 100.0 34 .............................. TGCGATATCTAATTTATCTGCTCCTGTGCCTGCG 941466 30 100.0 37 .............................. TTTCTTTGTAGTTTTTCTTCTGCAGGAATGTATCAAA 941399 30 100.0 34 .............................. GTTTCAAATAACAATTTAATTAAAACAGCAAAAG 941335 30 100.0 37 .............................. ACTCTATAACAGACTTGGACAGTGACGACTACGCAGC 941268 30 100.0 37 .............................. TTCTTCCTTCACAATAAAGTCACCGACAAGGAACTCT 941201 30 100.0 36 .............................. AAGGTTTTGAAAATGTAGAATTCTATTCACGTTAGG 941135 30 100.0 35 .............................. AATGGTGCATTTTCTTTTCTAAAGAAGCCATGTTT 941070 30 100.0 35 .............................. CAGTCTTACCTTATTCGTCGTTACTTTTGAACCTG 941005 30 100.0 36 .............................. GCGGCTGGAACATTAAAGGCGCACGTGAATGATATC 940939 30 100.0 34 .............................. CGTATTTGAAGGAATAGCCTAAATCAGCTACTCC 940875 30 100.0 36 .............................. AGTAAAACCTAGCGATTTCGCTTTCGCGATGGCTTT 940809 30 100.0 35 .............................. TCTACAAATATCGAGTTATTAAGTACTGGGTTCGA 940744 30 96.7 34 ..........................G... AAATGGAGGAAGTCGTTAAAAATTGCGGCGCTGT 940680 30 100.0 36 .............................. AATGTTACCCGAATAAAAAAGAGGTAACGCGACAAG 940614 30 100.0 36 .............................. GGCATATTCAACATTCGTCCCAACTTCTAGCGTCAT 940548 30 100.0 34 .............................. CATGCATGTTCCCTCCCAACCATGCTTCAAAAAA 940484 30 100.0 36 .............................. AGGTCGCCTGTCGTATTCATGCGGAACTGCATCGCT 940418 30 100.0 38 .............................. TTCTAGGTGTATACAGTAGCTTGCTAACGTTTATCCGC 940350 30 100.0 36 .............................. GGCGGTTAGTAGTGTAGGTTTGTAGGTGTCTATTTT 940284 30 100.0 36 .............................. TCATAAATGTCTAAGACAGCATCGATAGTAGGTAAT 940218 30 100.0 36 .............................. TACGAAATGCTAAACGCTGATTCTGCAGTATTGTTA 940152 30 96.7 37 .................A............ ATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATT 940085 29 83.3 0 ..C..............A....-.C..G.. | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 99.1 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGGAGGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTTGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGCTGATGAGGTACCT # Right flank : TAGATTGCTCACAGATGCAGTGTTTTTATCCATTTTTTACAGAATAAATTATCATTTAACAGCCTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGGTTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCCGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATTTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACCTCTTCTCCGAATCTTGCGAAACAAATTGCTGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 65992-66879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRU010000008.1 Listeria booriae strain FSL L7-1427 NODE_8_length_114760_cov_20.365721, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 65992 30 100.0 37 .............................. ATTCCTATACGTTTTAAAAACATATCATATTACTATT 66059 30 100.0 36 .............................. ACAATTGTCAGCCCATTCGCGTTTGGCTCTATTTTA 66125 30 100.0 35 .............................. AAAAATCCGGTGTTGGATACATTTGGAGCGTTCCG 66190 30 100.0 36 .............................. AAAATGACGTGATAACACTCGGTGGTTATGCGTCGA 66256 30 100.0 35 .............................. AGGTCAATCATAAACTCACCATCTTTTTTAGCACC 66321 30 100.0 36 .............................. TCATTTGTGTAGGCAAAATTACTGTAAGCCATATAT 66387 30 100.0 36 .............................. ACGTTGGTAGATGCTATCTGGTCGTAAAGGTTTACC 66453 30 100.0 37 .............................. CGTGCAGAAAAACAATCGAACAATAAGCGTTACCAGC 66520 30 100.0 37 .............................. AATAAATTGGTTGCGGCTTTCTTTGTATGTTTTTTCG 66587 30 100.0 36 .............................. TGCTTTATCAGGTGTTAACTTAGTTAATTTCTATTT 66653 30 96.7 35 ....................T......... AATCGCATAGATGATTTACTAAAATATAAAGCCAC 66718 30 90.0 36 .C...............A..T......... TAATGTGTCCAGCCAAATCTCCCGGGCACGTATGTG 66784 30 100.0 36 .............................. GGAGCAGTTGCATTTGATGAAGAACATGCCTATGAA 66850 30 90.0 0 ....................T...A...T. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 98.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCAGGCACAACCAAGTCAGTATTCGAAGACTTCCAAGTGGCAAAAACAAACCGTCATACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCCCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCATAGGGGGAGAAGGGATTAGGATGGTTTTCGAGTGACTGAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : TCTCAAAGAAGGAGGGAAACCAAATGATTATGAAAAAATTAAAACTACGAGTCACCGTAGACAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACACATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAATACACTAACCATGAAAAAACCACTCGGTACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAAC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //