Array 1 1015503-1016933 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FORC098 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1015503 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 1015564 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 1015625 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 1015686 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 1015747 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 1015808 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 1015869 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 1015930 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 1015991 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 1016052 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 1016113 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 1016174 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 1016235 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 1016296 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 1016357 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 1016418 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 1016479 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 1016540 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 1016601 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 1016662 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 1016723 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 1016784 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 1016845 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 1016906 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1033557-1036454 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FORC098 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1033557 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 1033618 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 1033679 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 1033740 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 1033801 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 1033862 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 1033923 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 1033984 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 1034045 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 1034106 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 1034167 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 1034228 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 1034289 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 1034350 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 1034411 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 1034472 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 1034533 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 1034594 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 1034655 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 1034716 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 1034777 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 1034838 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 1034899 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 1034960 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 1035021 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 1035082 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 1035143 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 1035204 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 1035265 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 1035326 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 1035387 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 1035448 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 1035509 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 1035570 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 1035631 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 1035692 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 1035753 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 1035814 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 1035875 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 1035936 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 1035997 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 1036058 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 1036119 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 1036180 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 1036241 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 1036302 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 1036364 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1036425 29 96.6 0 ............T................ | A [1036452] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //