Array 1 164060-161953 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOL01000001.1 Salmonella enterica strain BCW_4907 NODE_1_length_843085_cov_3.82653, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 164059 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 163998 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 163937 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 163876 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 163814 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 163753 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 163692 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 163631 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 163570 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 163509 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 163448 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 163387 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 163326 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 163265 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 163204 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 163143 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 163081 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 163020 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 162958 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 162897 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 162836 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 162775 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 162714 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 162653 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 162592 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 162531 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 162470 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 162409 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 162348 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 162287 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 162226 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 162165 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 162104 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 162043 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161982 29 89.7 0 A...........TC............... | A [161955] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181444-180318 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOL01000001.1 Salmonella enterica strain BCW_4907 NODE_1_length_843085_cov_3.82653, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181443 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 181382 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 181321 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 181260 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 181199 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 181138 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 181077 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 181016 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 180955 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 180894 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 180833 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 180772 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 180711 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 180650 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 180589 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 180528 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 180467 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 180406 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 180345 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //