Array 1 1-348 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQHB01000061.1 Escherichia coli strain LVSTRB148 NODE_357_length_318_cov_53.569183, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 62 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 123 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 184 29 100.0 40 ............................. NNNNNNNNNNGTATCGCACTGCGGCAGATGTTCCGGGGCC 253 29 93.1 38 ...........................NN NNNNNNNNAAAACATTTTCCGAGCTTTGCGATTTATAT 320 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 6 29 98.9 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 145345-144271 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQHB01000071.1 Escherichia coli strain LVSTRB148 NODE_481_length_428655_cov_70.112129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 145344 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 145283 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 145222 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 145161 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 145100 29 100.0 40 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGNNNNNNNNN 145031 29 96.6 32 N............................ TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 144970 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 144909 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 144848 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 144787 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 144726 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 144665 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 144604 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 144543 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 144482 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 144421 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 144360 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 144299 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ======================================== ================== 18 29 98.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //