Array 1 125091-124574 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE136726.1 Escherichia sp. KTE31 acHaW-supercont1.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125090 29 100.0 32 ............................. GCGAGGTTTTCGTATAGCCTGGATTTAATACT 125029 29 100.0 32 ............................. TCGGTGGGTATCAGCAAATTCGAGTGGATTCA 124968 29 100.0 32 ............................. GACCAGACGGCCTCGTTCTCGCTGCCGGATGT 124907 29 96.6 32 ............................A ATAACCACGTTGTTGCAGGCAATAACACCGGC 124846 29 100.0 32 ............................. TTCATCTCGGTGGGGACATTATCGAAACCATT 124785 29 100.0 32 ............................. GGTCTGCCGAACGATGATATTGAGTTCAAGCT 124724 29 100.0 32 ............................. CAAAGGTGCCAAAACGATCGTTGTTAGCGGAT 124663 29 100.0 32 ............................. TAGGTGAACGCGAGAGGTCTGGGTTGATGCGT 124602 29 93.1 0 ............T...............T | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGTTGGCGACGCTGACCGATGATAAACCGCGAGTAATTGCCCTTCAGCCGATTAGCCAGAAGGATGATGCCACGCGTTTGTGTATTGAAACCTGCATTGCGCGGAACTGGCGTTTGTCGATGCAAACGCATAAATATTTGAATATTGCCTGATTAAACATTTATAAGCGTTGAAAATGAGTGGAACCTGTAAATAACTCCACTCATTTATATTCTTTGTCGCCTCTGAAACTCCTCCATTTTGCCCATCCTGGACTAATCATTGCCATTCTCTACAAATGCTGTGGCGTTAATTTTTCGCTGGGGTGAAAATTATTGCGGTGAAGTTTGGTAGATTTTAGTTTTTATAGATTTATTTTAAATATTTACCTTTTCAGCCAATGGATTAAGTGTTCTTTAACATAGTAGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATGATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTCAGTAGGGTTCAGCCCGGGCAGTTTCCCGCCCGGTCTTCCTTACTTACGCATTCGACCAGCTCTGGATCGAATCCGCACTCCCCAGCTCACCATGCATCACTTCATACGATTTTTTCAAAATCACATCGGTGTGTTTGGTTAGGTCTTTGAAAATACCTTTATTCATCGCGTCGTAGCGTTTGGCATTGCACTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGATCGCCGTTGCGTAATCCGGATACAGACCCAGACCTACCGCTGTATTAATCGCCGCCCCCAAACTTGCACAGCCGTTAATGGCGTTACGCCGTGCCCCACATATCCAGAGCGCAACACCCTAACATAGCGTTACTTAAGGGAAATTAACCGCCGACACACTCTTATCATTCGCCGCGATAGATGCAACCTGCGGTGCAGGTTTCTTTCACCATAACCGCACTTAACAGCGGAACAACAGGTTTAACCTGATCCCAAATCCATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1585155-1586024 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE136722.1 Escherichia sp. KTE31 acHaW-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1585155 28 100.0 32 ............................ TTACCATCCCACACGACTCTGAGTTCATGCGC 1585215 28 100.0 32 ............................ TGGCGTTGTCCTGGTCACTGTCTGGATCGGGT 1585275 28 100.0 32 ............................ TGCCGGTCCCCGGACAGAGCACAAAGGAAGTC 1585335 28 100.0 33 ............................ CTGCTGCGCCTGCCCTGTTGTTTCGAGATGATC 1585396 28 100.0 32 ............................ TATATGCAGTACACACCCGAACAGGCACGTAG 1585456 28 100.0 32 ............................ TCTCGCGATGCCGAAGACCATGTAGAATATGT 1585516 28 100.0 32 ............................ TCGCCGATCAAATCGAGGCACCAGATGTGCTG 1585576 28 100.0 32 ............................ TAAGTACTGCCAGCAAGCTGTCAGTACTAAGT 1585636 28 100.0 32 ............................ CGCTGGCTGGCTGGTGTTGACGCGGTGCGGCA 1585696 28 100.0 32 ............................ GCTAATCACGACCAGATCCTGTCCATCCTGGC 1585756 28 100.0 33 ............................ CTGTTGCGCCGCCGCACCTTTGTCTTTAATTTC 1585817 28 100.0 32 ............................ AGAAGGCAAAGCCTGGCTTGTGAAACGGCTTG 1585877 28 100.0 32 ............................ GATCTGGTGTACTCCCCTTACGTCAAATAATA 1585937 28 100.0 31 ............................ AACGTAGAGGACCAGCTGTCGAATGCAGCAA 1585996 28 89.3 0 ....................T...C..T | C [1586019] ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGTTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCAGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTTGTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTACTGTAACTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGTAGCAGCAGGGAAATTAGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGCAATGGTAGACGTTTGGTCATATCATGACGCTCTCAACTTCAAAACATTAGCCTTAGCACACAATAACAATTGTAATAATTGCGACAGAAATCAATTTCCTGCATAGAAATCAATGTTGTACTAATCCTAACGCCTTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGGGGGCGGGTGGAGTATGTTACCAGTGAAGGCAAGGAGTCATATTACTGGAATATCCCCATTGCGAATACCACAGCGTTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTATGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGTCCACAAAGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1595277-1595964 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE136722.1 Escherichia sp. KTE31 acHaW-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1595277 28 100.0 32 ............................ AACATTATTTGGCCCAAAGATAATAGTAATAT 1595337 28 100.0 32 ............................ GAATCCAGTTGTCGTGGTACGCACGGAACACT 1595397 28 100.0 32 ............................ GTCATCACAAGACCAGCTACAGCCGCCGCATC 1595457 28 100.0 32 ............................ GCCTTCCATGCCGCTGACGCGGCATCAAAAAA 1595517 28 100.0 32 ............................ CCAGCACCAATTGCTGGGGGTTGCCCTCATTT 1595577 28 100.0 32 ............................ CTGTTGTATTCAGCCATTCTCCGGTCATCTGC 1595637 28 100.0 32 ............................ TCTTTCAGCGCAACCATGGCATTCTTGCCGCC 1595697 28 100.0 32 ............................ ATCAGCAAAACCGGCAACACAGACATTTGAAG 1595757 28 100.0 32 ............................ ACCTCAATACTCAAACAGGGATCGTTTCGCAG 1595817 28 96.4 33 .............T.............. AGAATGCTGGCACTTAGTCCAACAGGAAATCTT 1595878 28 96.4 32 .........T.................. GCTAACGCGGAGATACGCCCCGGCTGCGGGTG 1595938 27 89.3 0 ...........C........-...T... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGAACTGAGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAAAATTTATTTAGATTTGTTTGTTTGGTTATGCATTGTTCACGCGGTTCATCCGACCAGGATTGTGACTATACATGTTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCCAATCGACCCTTTTTCAGAGTGAAATGTAACTCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGTTATTATTCCA # Right flank : AATCCATACCCCAATATTTATTTTCTTCCTTAACTCCAGATGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //