Array 1 76340-82527 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEDO01000018.1 Variovorax boronicumulans strain DE0202 NODE_18_length_125753_cov_32.624258, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 76340 29 100.0 32 ............................. GTGAGGGGATCGAGATCAAGAACGCCGTGCTC 76401 29 100.0 32 ............................. ATGGGCGGCGGTCTGATCAGCATCGGCGACCA 76462 29 100.0 32 ............................. CAGCGACAGATCGCCTCGACCGAGAACGCCCG 76523 29 100.0 32 ............................. CAGGACGGGCGCAACCCGTCCGCCGTGCTGTA 76584 29 100.0 32 ............................. TGGGGCGGCCCCATCGGACAGGTGGTGCTGTG 76645 29 100.0 32 ............................. CCACGTCGCCACGCCCATCGTGAAGCTGTGGG 76706 29 100.0 32 ............................. CCGAGCGCGAGAAGCACCTTCGCCAGCATGGG 76767 29 100.0 32 ............................. TTGCGTGCATCGAAGAACGCGAGGCGCGCGAT 76828 29 100.0 33 ............................. CCCGCAGGATCGCTGCCAAGTTCGGCGCCGCCG 76890 29 100.0 32 ............................. TCCAGATCAGCAGGAGTCAGCCAGCCCTGCAT 76951 29 100.0 32 ............................. TAGCCGAGTGCGCAGATCGGCTGTCCAACAGC 77012 29 100.0 32 ............................. CGGGATGCTGCGCTGATGTCCGCCAGCTGGGG 77073 29 96.6 32 ..G.......................... CGAGCAAGGCCGACTTCGCATCCGATGAGGAG 77134 29 100.0 32 ............................. ACCATGATGACCCTTTGAAGGACCGACAGATG 77195 29 100.0 32 ............................. CGACCCCAAAGCTCAAGCGGGCGGCGTGACCC 77256 29 100.0 32 ............................. AGGTCGGCGGGCAGGTCGCGCAGCTCGTTGCC 77317 29 96.6 32 ............................T TAAGCCACTTCTCGCCGTTAGCAGCTTGGTAG 77378 29 100.0 32 ............................. GACCCGCAATTCCTTGAAGATCGCCAGCGCCT 77439 29 100.0 32 ............................. CCGGGCGGTTGCCCTGAAGAGCTGGCGGCGAT 77500 29 100.0 32 ............................. CATCGGGTTCGCCAAGATCAACGCGACGGAGC 77561 29 100.0 32 ............................. ATGTCCCTGACCTGGGGCCGCTGAATGAGCAT 77622 29 96.6 32 ............................T CATGTCGATGCCGTAATGCCGGTGCGTCTCCA 77683 29 100.0 32 ............................. GACCTCTTCGTAGTCGGGCAGGGCGCTTTCGG 77744 29 100.0 32 ............................. CTCGCGCACGATGGGCAAGGCGATCACGAAGT 77805 29 100.0 32 ............................. AAGAAGCCTCGGACCATCGGCCGGCTGCAGGA 77866 29 100.0 32 ............................. CGCCGGCTGTGGGCCATGCTCACCGACATCAG 77927 29 100.0 32 ............................. TCTCGCAGAAGTTTGGAGCGGGCCTCGATCTT 77988 29 100.0 32 ............................. TCTGCGAGCATCGCCACAACGCCGAGCGGGCC 78049 29 100.0 32 ............................. GCTGGCGATCTTGGGATTTACCCTTGGTCTGG 78110 29 100.0 32 ............................. TCTTGCGCGCATACGAAAAGGGCCACCAGTTG 78171 29 100.0 32 ............................. GTCATCGCCGCTCTGGTTTCTTCTCTCCTCGG 78232 29 100.0 32 ............................. GGCTGCGCTGATGCCCTGTCCCTGGCCGTGCT 78293 29 100.0 32 ............................. GCAAAGGTCGTGCGCCCGCACAGCCCGGTCGA 78354 29 100.0 32 ............................. CGTGGACGTAGGCCTGGTTGGTTGCGCGGCGC 78415 29 100.0 32 ............................. TACGAGCACAAGCGCCCGACGTTCGAGCAGCA 78476 29 100.0 32 ............................. ATGCGGCATGCTCGCAATGATGTTGCCGAAGC 78537 29 100.0 32 ............................. GCGAATTGCATTTCGAATGACCACATGATTCC 78598 29 100.0 32 ............................. TGCGCCAGATATTCCTCGCGCGTGATCTGGCG 78659 29 100.0 32 ............................. GAGCCGCGCACCAGCAAGCGAACCGGCAAGGA 78720 29 100.0 32 ............................. TGCACCCCGCGCTCGACGCCGAACGCCGTCAT 78781 29 100.0 32 ............................. TCCACGCTCCCAACCACATCGCGGCTTACTCC 78842 29 96.6 32 .........A................... GGCCCCGCCCGTGGCGATGGCGTCATCCCCGG 78903 29 100.0 32 ............................. TTGCTGGCCCGCCAGCTGGACGGCAAGAGCTA 78964 29 96.6 32 ............................G TGGACTGGGAAAGACGGCAGTACCGTGGACGC 79025 29 100.0 32 ............................. CTGACTTTTCAAGCCCCCTGCCGACCCGGATA 79086 29 96.6 32 .......................G..... CCGGCCCAGGGTGGCCAGCAGCGCGGCCTGCC 79147 29 100.0 32 ............................. TGGGAGGCCCGGGGCAAGCAGAGCGAAGCCGA 79208 29 100.0 32 ............................. GCCACGCCGCAGGACGCGGCCGTGGCCTTCGC 79269 29 100.0 32 ............................. TGCAGGGCAACACCGACGAGATCCGCAAGCGG 79330 29 100.0 32 ............................. TTCGTCGCTGGCTGGATCGGCGGTGCGCGGAC 79391 29 100.0 32 ............................. GAAGTGACGCATGATTCAAGCTCCCACGGTTT 79452 29 100.0 32 ............................. TCGACGGGCCTTACCCGTGCCGACGGAGTGAC 79513 29 100.0 32 ............................. GAATACAAACCGGTCCGCTGCACCAGTTCAAA 79574 29 100.0 32 ............................. TCCAGATCAGCAGGAGTCAGCCAGCCCTGCAT 79635 29 100.0 32 ............................. GGCGGCGCGCCGATTGACGACTACCGCCTCTC 79696 29 100.0 32 ............................. GAGGATGCTGGCGGTCGCAGCTTCTATCTCGG 79757 29 100.0 32 ............................. TCAACGCGGCCACCCGCAGACGCCGTGAGGCG 79818 29 100.0 32 ............................. GTACAGCATGCTGCGCAATCGGTTCGACGATG 79879 29 100.0 32 ............................. GCCACGGTGGACCCGCAGCTGGCCGAGCGCTT 79940 29 100.0 32 ............................. ACCACACTGCCCAGGTCAGTGGCATCCACAGT 80001 29 100.0 32 ............................. AGCACCGAGCCCAACGCGAATTGCATTTCGAA 80062 29 100.0 32 ............................. TGCGCCTCATCACCAGCGACGGGCTGAAGACC 80123 29 100.0 32 ............................. CAGGTGCAGCAGCTGACCGACGAGGGCGCGAT 80184 29 100.0 32 ............................. TGCTCCAGGTTAAGAGGCAAGTTCGTGATGAC 80245 29 93.1 32 .......A....................G CCAAAGGAGGATGTCTCGTTCAGTGATTCCCC 80306 29 100.0 32 ............................. CTGAGAACCGCAACTACAAGGCCGAGTACGCC 80367 29 100.0 32 ............................. ATGCGGCCCTGAGGAGTGAGCGTATCGACGGA 80428 29 100.0 32 ............................. TCTTCGTATGGATAGTCTGCGGGCAGTTCCTG 80489 29 100.0 32 ............................. CTCCGCGAAATGAAGGGCACGTCCAAGACGAC 80550 29 96.6 32 ............................G CACTGGCGAATGGCTCCCATCCGAGTGGGGTC 80611 29 96.6 32 .......................G..... TCCAGGCCGACGCGCAGAAGTTCCAGGCCGAA 80672 29 100.0 32 ............................. GTCTACGCATCCGAGAAGCTGCGGGAGAAGGT 80733 29 100.0 32 ............................. GAATAGCGGCGGATGTCGGCATCGGACATGCC 80794 29 96.6 32 ...........................T. CGTTGAGGTTGACGTTTGCAAATGGCAGCCGA 80855 29 100.0 32 ............................. CGAGCACCCCCGACGCAGCTGCGCCGGCCCCA 80916 29 100.0 32 ............................. TGCGCAGCAGCATCGGCGCCAGGCGTTGACGC 80977 29 100.0 32 ............................. AAGATCAAGAGCGCACACCCAGACTGCAAGGT 81038 29 100.0 32 ............................. GGTTGCTTGGGCCTCTAGGTCCGCAAGCGCCA 81099 29 100.0 32 ............................. TGCTCGTCGTAGAAGGCGAGCTGGTCTGGGGC 81160 29 100.0 32 ............................. CCGCGTTTGGCGCATTCTTCGCGGGCGATGCG 81221 29 100.0 32 ............................. TTCGACGGTCATCCCGGCCTCCGTAGGTCGGC 81282 29 100.0 32 ............................. GTGTCCGCACGGGTGTCGAAGTTCTCCATGTC 81343 29 100.0 32 ............................. AGGCGTACATCGGGGGCACCCAGGCCCTGAAG 81404 29 96.6 32 A............................ CTTGAAGACGGTTCGCCCGAGTGGGTCGCCTC 81465 29 100.0 32 ............................. ATGCGGACGGTTTTCACCGTGTGACCATTGCG 81526 29 100.0 32 ............................. CCATGTCGGCCGGACGTGATCGGGTCGGCCAC 81587 29 96.6 32 ........................C.... GGCAGCAGGGGGTTCGCGATCTTCGGCCTAGG 81648 29 100.0 32 ............................. CAGACAATCAGCCAGCCCGAGCTCAATCTGCT 81709 29 100.0 32 ............................. TGTCGGCCAAGCCTATTCCTTCGTGCCCACGA 81770 29 100.0 32 ............................. CAGGTGCCGTTGCCGCACTCGTGGAACATGCG 81831 29 100.0 32 ............................. ATGGCGGGGTGCTTCCGCAACTGCTACAGCGA 81892 29 100.0 32 ............................. GAAACCATCGGACGCATCGCCCGGGAAGAATG 81953 29 96.6 32 ............................T CCTTCGCCCAAAACAACCAGGCAACCTATTGA 82014 29 100.0 32 ............................. CTTCGTCGTAACAGTCGTGGTCTCCTTAGGCG 82075 28 96.6 32 .....-....................... TCCAACCAGTCCATGCCCCGCACGAAGATCAC 82135 29 96.6 33 ............................T CCCGTACCCGGAAAAGTGCGAAATCATCCTTGA 82197 29 93.1 32 .C.....G..................... ACGCGCGGCCGTGCTGCGGCCCTTCTCGAAAA 82258 29 96.6 32 ............................T TACGCAGGAGTTGCGTGGTCGGGGGATTTCTG 82319 29 100.0 89 ............................. GGCCTTCGCGATACAAGGCAACGGCATGGTCGGGTTGTCCGGCGTGCGCGGGAAGCCGATGCGGCCATCTGGGATGCGATTGAGCACGA 82437 28 86.2 33 ....-T...T.A................. CCCGTGGTGGCCACGCCCGCGACCAGTGCCGAC 82498 29 89.7 0 .........T.A................T | C [82521] ========== ====== ====== ====== ============================= ========================================================================================= ================== 101 29 99.1 33 GGTTGCCCCGCGTGCGCGGGGATAGGCCC # Left flank : GATACGGTCGATCGCCTGGTACGGCGTGAGGCCGCGGCGGTGTTTCGCAAGCAGCAGGTGATCGGCGCCATGATCGACCGCATCAAGGCGGTGTTGCGCATGGACGAGCTGGGAAGCGAGGTGAAGAGTGGCGCTGGTGATGATCGTGATCTGTGACGTGCCGGACCGTTTCCATGGCTTTCTGTCCTCGGTGATGTTGGAGGTGTCTCCCAACGTGTTCGTATCACCGCGCATGAGCAACGGCGTCCGTGTGCGTGTGTGGGAGGTCATGAGCGACTGGCATGGCCATGAGCGGCAAGGCAGCCTGGTGATGGTCTGGCGTGATCTGAATGCCGTTGGCGGGGTCGGCATTGCCAATCTTGGCGATCCGCCGCGAGAGTTGGTGGAAGCAGACGGCATGTGGCTGGTGAGGCGGCGCGCGGCGTCGTTTGGCAACGCTCCTTAAAATTTCGAATGGGTTTGGAAGTTTTCTCTTGCGTGGCGTGAAGTTACGTGGGAGA # Right flank : TGCCAGGGCGACCGGGTACTCGATTCCTGGCGGGTTGCCGCATGCGCGGCAAGTCGGTTCATCGCTCGCCACGCCACAATCGCACATTAGTACTCCCGAGCCCCCGCATGATCCCCATCACCCCCACCATCTCCGTCGGCAACGACCTTCCCTTCGTGCTCTTCGGCGGCATCAACGTGCTCGAGTCCCGCGACCTGGCCCTGCGCACCTGCGAGGAGTACGTGCGCGTCACCACCAAGCTGGGCATCCCGTACGTGTTCAAGGCCAGCTTCGACAAGGCCAACCGGTCCTCCATCCACTCCTACCGCGGCCCGGGTCTGGAGGAGGGCATGAAGATCTTCGAGGCCGTCAAGGCGCAGTTCGGCGTGCCGGTCATCACCGATGTGCACGAGCCCTGGCAGGCCCAGCCCGTCGCCGAGGTGGTCGACGTGCTGCAGCTGCCGGCCTTCCTGGCGCGCCAGACCGACCTGGTGGTGGCGCTGGCCAAGACGGGCCGCGTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCCCCGCGTGCGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //