Array 1 261993-263059 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MXOO01000002.1 Salmonella enterica subsp. houtenae serovar 48:g,z51:- strain BCW_1543 NODE_2_length_416378_cov_0.404829, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    261993	    29	 100.0	    32	.............................	CCCAGAATGACTCAGCGTGACCGATGGCATAA 	
    262054	    29	 100.0	    32	.............................	GATTGCCACATCACGCGCGATGACGCGATATC 	
    262115	    29	 100.0	    32	.............................	CCTAAAGACTGGGACGAGGCCGCCGCTCACGC 	
    262176	    29	 100.0	    32	.............................	CCGGTGGAACGATGGCGGCGAACGGGGAGAAA 	
    262237	    29	 100.0	    32	.............................	AATTTTTCCCGCTGTAATATTGACGATGTTGA 	
    262298	    29	 100.0	    33	.............................	CAAAATTACACGAGAGCTTTCTCTCGGCTTCGC	
    262360	    29	 100.0	    32	.............................	CAGGGTTCAGTTATGGGCAGACAGACGACCAA 	
    262421	    29	 100.0	    32	.............................	CGTACAATCCCGTCACCAAAAAATGACCATTT 	
    262482	    29	 100.0	    32	.............................	GGCGGCAGCTATTAATGCTGAAATCGCCGTGT 	
    262543	    29	 100.0	    32	.............................	CCCCAGGAGACTTTTAAATCAACCTGAGGCCA 	
    262604	    29	 100.0	    32	.............................	TTCTTCCATGGTCCATTTTTGGCCTTGCTGGT 	
    262665	    29	 100.0	    32	.............................	CACAAATTTTTATTTGATTGCAAACATTTCGC 	
    262726	    29	 100.0	    32	.............................	ATACTCTCAAACGACTGCCACATCACACGCGC 	
    262787	    29	 100.0	    32	.............................	TTACGAATGAGAACCCATTTAGAGGTCGAATC 	
    262848	    29	 100.0	    32	.............................	GGTACACCTCTGGTAATAATGGAGGTCTTGAT 	
    262909	    29	 100.0	    32	.............................	ATATGAATGGGGTTTACGGGAAAAATATACAT 	
    262970	    29	 100.0	    32	.............................	GATCTGTCCGGTATGGTTATTGTCTGCGGATA 	
    263031	    29	  89.7	     0	............T..............GT	|                                	
==========	======	======	======	=============================	=================================	==================
        18	    29	  99.4	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   CACCGCCATTAAGAGTTGATCCAGCGTACCAACACCGACTTCCGCCAGCAGCGCTTTTTTGCGCGAATCGGCAAACCAGGCGTGACACTCGCTGGCCGCGTTGCCGTCATGATGCGCGTAATCTTCCGCCGCACTTTCTCCCACGGGTTGCCAGATTGATTGCCGGAAGGCGTCTGACATCTCCCGCCCGCCGTGCGCCAGGATGAGTGATGGCCTGGAATTATCGTCAAATAGCGCGTGGTAAGCTGTCGCCAGGCGCTGATACATGGCGTTTGCAGTCGCCATTGTCGGTAGCCCAACGTAGAGACCGTGGCTTTTCCCGGCGGACATTAAACGGTGAGTCAGAATTAACGCGGCTTCAGTTTTGCCCGCGCCGGTAACGTCTTCCAGAATAACCAACTGCGGGCCTGGGGCTGAGATATCCAGCGTGCTCGCCCGTTCCTGAAGCGGAGTGAGCGTACGGATAAATGGAAACAGCGCCTGATGGCCCTGATAATGAC
# Right flank :  TTTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//