Array 1 27521-29512 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGE010000023.1 Clostridium perfringens strain WCA-h-251-APC-2 Contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 27521 29 100.0 36 ............................. ATGAATATACGTTTACTTACATTAAACTCTTTTATA 27586 29 100.0 37 ............................. ATGGATAGGGTAATAGTTAAAGATAAAGTAATTAAAG 27652 29 100.0 36 ............................. ATTCTTGAATCTCTAATAGAATTCTTAGTAGATAAG 27717 29 100.0 37 ............................. ATTTTTGTCCTAAAGTATTTCTCACAATTTATCCCCC 27783 29 100.0 37 ............................. ATAGAGAATATAAATTTAAAATATTCTTTTAATATAA 27849 29 100.0 36 ............................. TTGGGAGGATGTGTTTGTTGACAAGTCCCCAAATTC 27914 29 100.0 36 ............................. TGTTCTCTATCATAAATAAAATTTTCTTTCTTCATA 27979 29 100.0 36 ............................. AAAAGTAGTTAAGCAATTAAAAGAGCTTAGAAAATT 28044 29 100.0 36 ............................. TTGGAAATTACTTATAAGCCTACTGGCCAAAAGATA 28109 29 100.0 37 ............................. AAACAAAAGTATATAGATACAGGTTTATTTGAAGTTG 28175 29 100.0 36 ............................. TAGTAATACAAAGCCTAAAACATAGGCTTTTTTATT 28240 29 100.0 37 ............................. TTCCTATTTTTTTGCATATTTCTTCATCCGTCCAACG 28306 29 100.0 37 ............................. TGGGAAGATCAAACTGGTGATGCAAGAAAACGCATGA 28372 29 100.0 37 ............................. TACTACTTGGTCGCAAATCATCTAAAATTATACAATC 28438 29 100.0 36 ............................. TAGTAACCCTAGCATGCAAGGAGCAACGTCTTTTAA 28503 29 100.0 36 ............................. AAAGAACATTCTGTATTTCATAAGCTAATTCAGAAT 28568 29 100.0 38 ............................. CTCTAATATAAGGGTGTGAGTAAAGATTAATCCTTGGG 28635 29 100.0 37 ............................. ATCTATCTTTTAATTTTTCTCTTGAAAAATCTAACTC 28701 29 100.0 36 ............................. AAAATGGAAGTTACTGCGACAGAGAATACAAAGATC 28766 29 100.0 36 ............................. TATGGATTTATGACTGGAATGTTTGTATGGTTTTGT 28831 29 100.0 36 ............................. TTATTCACACATCAATGACAGATGTTCTTTTATCCC 28896 29 100.0 36 ............................. TGTCCTAAATTAGATATTCAAATTGAAGAAGGAACA 28961 29 100.0 36 ............................. GTGTTCATTATTACGTTGATGATACTGGAGTATATC 29026 29 100.0 36 ............................. CAAAAACACCTTTTAAAATGACAGCTTACTGTGAAA 29091 29 100.0 35 ............................. CTATTAATGATATATCCGGATAGGCGGGGTTGAAT 29155 29 100.0 36 ............................. AGATTATGCAGCACTTTTTTTGCTTGAATATCGTTT 29220 29 100.0 36 ............................. TAAATTCATCTATAAAAAAGTTGTCTGAAGGAATTA 29285 29 100.0 37 ............................. TTTATTAATTTCTTAACTATATATTACTACAAACGTA 29351 29 100.0 37 ............................. AAATAATTAGCAACTTCATTCTTAAATCTTTTAATAT 29417 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 29483 29 86.2 0 .................GAA....C.... | T [29510] ========== ====== ====== ====== ============================= ====================================== ================== 31 29 99.6 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTTATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : TATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTAAATCTAATAATCTATACATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //