Array 1 28774-29750 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADU01000028.1 Xanthomonas translucens pv. undulosa strain BLSW16 Contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 28774 31 87.1 33 ...........................AAAC TTTCGCTCCTTAATGGTGTCGCTCATCTTGCGG 28838 31 96.8 39 ..........................N.... NNNNNCATCCAGTACGCCGACAACTCTGCCTCGCCAGGC 28908 31 87.1 35 ...........................AAAC TTGCGATCCTGGACGTTCATTTTTTGCCTCGGTGT 28974 31 96.8 38 ...........................A... NNNNNNNTGAGGACCGCCGCCCACGACATGCCACTCCC 29043 31 100.0 39 ............................... NNNNNNTCCTGATGCAGAATCCTCTGTGTGTGTACTGTG 29113 31 87.1 33 ...........................AAAC AAGGTGGTCTACGTCAACATGCCAGGCACGGCC 29177 31 93.5 37 .........................NN.... NNNNTGATCCCACACCAACCGACACCGAGGCAAAAAA 29245 31 93.5 38 ...........................AA.. NNNNNNNNGGCGCAAGGACATAGCTTCCAAACTCACTG 29314 31 100.0 38 ............................... NNNNNNCTGGGTGCGCAGATCTTCGATCGCTGGGAATC 29383 31 100.0 37 ............................... NNNNNNACTCACTGATCTGGAGGCAGCCGGCGACCTA 29451 31 100.0 37 ............................... NNNNNNTCGGTGAGTTCCGGATTGGTGGGTGGCGCTG 29519 31 100.0 38 ............................... NNNNNNCCAGGTCTAGCAAGATGGTGGAGAATACAGGG 29588 31 100.0 37 ............................... NNNNNNATTTGAGTACCCATGGCCGGTCGCCGTAAGC 29656 31 100.0 37 ............................... NNNNNNTGAACAGGCCATCCTTTCCTGGGTCCTTGCC 29724 27 87.1 0 ...........................---- | Deletion [29751] ========== ====== ====== ====== =============================== ======================================= ================== 15 31 95.3 37 GTCGCGTCCTCACGGGCGCGTGGATTGNNNN # Left flank : CCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACACCTCACCAGCGGATTCCTATGGCCAGTACCTCTAGTCGCGTCCTCACGGGCGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCACCAGCCCGTCGCGGGTGGCATC # Right flank : | # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGNNNN # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [10.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13445-12141 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADU01000085.1 Xanthomonas translucens pv. undulosa strain BLSW16 Contig_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================= ================== 13444 31 87.1 35 NNNN........................... TACAGCGCCCAGCGGCTGGCCAAGCTGCAGCGCGC 13378 31 100.0 36 ............................... GCCTATGCCGTCGTTGCTGGATGGTCAGTGCAGGCC 13311 31 100.0 34 ............................... TTGACCATGCCGCGAAGCATGGCCTGATCCAGCC 13246 31 100.0 35 ............................... TTCTACAACCTGTTCCTGATGCTGGAATCGCTCGG 13180 31 100.0 36 ............................... GGGAAACTCGTCAGCGGGCCGAGTACCCCGCCGCCG 13113 31 100.0 35 ............................... TTTCTCGGCGGCGATCACTGCCTGGCTAAACTTCG 13047 31 100.0 36 ............................... GGGAAACTCGTCAGCGGGCCGAGTACCCCGCCGCCG 12980 31 100.0 35 ............................... TCTGCACTGGCGTCGATCCAGGCGCGGACCTCATC 12914 31 100.0 34 ............................... AAGACCCTGAAGATCGTTGACGCCCCGGGNNNNN 12849 31 83.9 35 NNNNN.......................... TCGATGCTCATATTCTTACTCCTCGTTTCTGCCCG 12783 31 100.0 38 ............................... CTGTTCGGTCGTACGATGCTGCCCACCTGCAANNNNNN 12714 31 87.1 35 NNNN........................... GGCTTCGCGCCGCTGGTGCCGACCGTTTCGCGCCT 12648 31 100.0 45 ............................... ACGGAGGCGCTGCTAGCAAGCATGCGCATGCCGCTGGTANNNNNN 12572 31 87.1 38 NNNN........................... TCAGCCTGCGTTGCTTCCCGCAAGTTAGAGANNNNNNN 12503 31 90.3 35 NNN............................ AGAAATATGTCGGAAGTGTCCATTGACGCGGTTGC 12437 31 100.0 37 ............................... AGCGCCGGGAAAGTGGTTTTGACGACTGGGGNNNNNN 12369 31 87.1 35 NNNN........................... TTTGGCGTCAGGTTGAGCACGAACTTGTCTGGGTC 12303 31 100.0 34 ............................... TGGTGCGACTCTATCAGCTGCCCCACTCATCAGG 12238 31 100.0 35 ............................... ACCCATGCCATGTCGTCCCGGCGCCACTCGACATC 12172 31 87.1 0 ......CG.......C.........C..... | G [12145] ========== ====== ====== ====== =============================== ============================================= ================== 20 31 95.5 36 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNGCGTCCTCACGGGCGCGTGGATTGAAACCCGTCCAGGTGCGCAGCTTTAATGCCGGCCGAGCTGTCGCGTCCTCACGGGCGCGTGGATTGAAACAGCAGCGAATAGTTACTCAGGTCTTTCGGGTCCATGTCGCGTCCTCACGGGCGCGTGGATTGAAACATGACCGCGTGGATCGCGCGTTTGCTTGGAGCGANNNNNNNNNNNNNNNNCGTCCTCACGGGCGCGTGGATTGAAACATGGGAAGGCGATGGAATCCTACCCGGCCATNNNNNNNNNNGTCCTCACGGGCGCGTGGATTGAAACTTTTTGTCCGGATACCAGTTGCGCGGACTGCANNNNNNNNNNTCCTCACGGGCGCGTGGATTGAAACCTGGCCCTGATCGCGCAACGCCAGCCGAAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAAGGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGACCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCCG # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 13924-13617 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADU01000085.1 Xanthomonas translucens pv. undulosa strain BLSW16 Contig_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================== ================== 13923 31 90.3 35 NNN............................ CCGTCCAGGTGCGCAGCTTTAATGCCGGCCGAGCT 13857 31 100.0 35 ............................... AGCAGCGAATAGTTACTCAGGTCTTTCGGGTCCAT 13791 31 100.0 46 ............................... ATGACCGCGTGGATCGCGCGTTTGCTTGGAGCGANNNNNNNNNNNN 13714 31 87.1 36 NNNN........................... ATGGGAAGGCGATGGAATCCTACCCGGCCATNNNNN 13647 31 83.9 0 NNNNN.......................... | ========== ====== ====== ====== =============================== ============================================== ================== 5 31 92.3 38 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : CGCTGGCGTCACACACCGGATNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCCTCACGGGCGCGTGGATTGAAACAGTATTGCAAAGGTAATGCGGCGGACGACGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCCTCACGGGCGCGTGGATTGAAACTACTGCGCGGCGATCCCTGTGAAAACGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTTTGTCCGGATACCAGTTGCGCGGACTGCANNNNNNNNNNTCCTCACGGGCGCGTGGATTGAAACCTGGCCCTGATCGCGCAACGCCAGCCGAAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCCTCACGGGCGCGTGGATTGAAACTACAGCGCCCAGCGGCTGGCCAAGCTGCAGCGCGCGTCGCGTCCTCACGGGCGCGTGGATTGAAACGCCTATGCCGTCGTTGCTGGATGGTCAGTGCAGGCCGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTGACCATGCCGCGAAGCATGGCCTGATCCAGCCGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTCTACAACCTGTTCCTGATGCTGGAATCGCTCGGGTCGCGTCCTCACGGGCGCGTGGATTGAAACGGGAAACTCGTCAGCGGGCCGAGTACCCCGCCG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 15434-14350 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADU01000085.1 Xanthomonas translucens pv. undulosa strain BLSW16 Contig_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================================= ================== 15433 31 96.8 38 ....N.......................... AAGTATCGTCACGAACCAGCTGCGTGCTTGTAGNNNNN 15364 31 96.8 57 ....N.......................... GCGAACTGCTCGAAGTGCCGACGGAAGGCGATANNNNNNNNNNNNNNNNNNNNNNNN 15276 31 93.5 38 ....NN......................... CTGGAAGGCTGCGTCATCAAGCGCCTGACCCGNNNNNN 15207 31 100.0 39 ............................... AGTCAGTGCATTCCGGATTTCGTTTTGAATCGCNNNNNN 15137 31 100.0 35 ............................... GGCGAAGATCGCGGGGGGTAAATTTCGGGANNNNN 15071 31 96.8 36 ....N.......................... TTGCTGTCGGCGGGGTTACTCCTCACCCGTANNNNN 15004 31 96.8 36 ....N.......................... GCGATCCAGACCCCGCGAATCGCGGTCTGGCTNNNN 14937 31 93.5 39 ....NN......................... CAGGCATGGGCCTGACGCAGGTAACCCGCGCCGNNNNNN 14867 31 100.0 39 ............................... AACGCAGCCGGCATCAAGGCTGCGCACCTGGACNNNNNN 14797 31 100.0 34 ............................... CAGACCGGCGTGCACACTGCGGGCATCGGCTACG 14732 31 87.1 38 GTCG........................... TTTTGCATGAGCCGCGGCATGTAGTCCGCGGNNNNNNN 14663 31 96.8 34 ...G........................... CTACGGCCTTCGCACGGCCGCGTGGTCGAAGTGC 14598 31 87.1 35 GTCG........................... TCTTAATTGTTAAGTTAATTTTTGAGGCGGGGCGA 14532 31 87.1 36 GTCG........................... TTTTCCCAAATCGGCTGGATTCCAAGCGATTTCGGG 14465 31 87.1 54 GTCG........................... CGGTGTGCTGGCGCTGGCGTCACACACCGGATNNNNNNNNNNNNNNNNNNNNNN 14380 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ========================================================= ================== 16 31 95.0 39 NNNNCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GTTCAACCCACGTCGCGTCCTCACGGGCGCGTGGATTGAAACATTTCGTCGTCCCGTGCTGTTGGTGTGGGAGTAGAGTCGTCGCGTCCTCACGGGCGCGTGGATTGAAACAACCTGCCGGACATGCGCGGCGAGTTTATCCGCGNNNNNNNNNNGCGTCCTCACGGGCGCGTGGATTGAAACCCCGTATTACTGCGTTTCGAAGCGCACGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGTCCTCACGGGCGCGTGGATTGAAACGACGTATTGCGCTGGTGGTCGAAATCGATCANNNNNNNNNNGCGTCCTCACGGGCGCGTGGATTGAAACCCTTCCCCGATGATTGGCGCAACAGTTCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AGTATTGCAAAGGTAATGCGGCGGACGACGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCCTCACGGGCGCGTGGATTGAAACTACTGCGCGGCGATCCCTGTGAAAACGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGTCCTCACGGGCGCGTGGATTGAAACCCGTCCAGGTGCGCAGCTTTAATGCCGGCCGAGCTGTCGCGTC # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : NNNNCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 16525-15751 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADU01000085.1 Xanthomonas translucens pv. undulosa strain BLSW16 Contig_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================== ================== 16524 28 90.3 35 ---............................ AACCCGTTCGCCAAGGACGGCCGCACCCATCGCTA 16461 31 100.0 35 ............................... CGGCGGCGGGGTACTCGGCCCGCTGACGAGTTTCC 16395 31 100.0 36 ............................... AGGCGCCACACAGCAAGATATAGCCCGTGAGTTCAG 16328 31 100.0 34 ............................... CCATATGCCGCAGCAGACAATTCCGCTGTTCGGG 16263 31 100.0 36 ............................... TCATGATCCACAACACTTGGCTGACGTACNNNNNNN 16196 31 90.3 40 NNN............................ CTTCGACCGGGAGCTCCACAGGGGCCGCCGGCGNNNNNNN 16125 31 90.3 42 NNN............................ CGCTGCGACATTGACGCAGAGAAGCGAGTGGCGCTNNNNNNN 16052 31 90.3 34 NNN............................ TATGGCACCCGTAGCGAGGCGGTGGGTATGTGGG 15987 31 100.0 34 ............................... TACGAGTACGTCGCCCGCTTGATGTTCAACCCAC 15922 31 100.0 38 ............................... ATTTCGTCGTCCCGTGCTGTTGGTGTGGGAGTAGAGTC 15853 31 100.0 41 ............................... AACCTGCCGGACATGCGCGGCGAGTTTATCCGCGNNNNNNN 15781 31 90.3 0 NNN............................ | ========== ====== ====== ====== =============================== ========================================== ================== 12 31 96.0 37 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : CCCGTATTACTGCGTTTCGAAGCGCACGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGTCCTCACGGGCGCGTGGATTGAAACGACGTATTGCGCTGGTGGTCGAAATCGATCANNNNNNNNNNGCGTCCTCACGGGCGCGTGGATTGAAACCCTTCCCCGATGATTGGCGCAACAGTTCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCTCACGGGCGCGTGGATTGAAACAAGTATCGTCACGAACCAGCTGCGTGCTTGTAGNNNNNNNNNNGTCCTCACGGGCGCGTGGATTGAAACGCGAACTGCTCGAAGTGCCGACGGAAGGCGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTCACGGGCGCGTGGATT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NGCGTCCTCACGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //