Array 1 51158-52249 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUQA01000044.1 Ligilactobacillus salivarius strain 866_LSAL 103_52267_1322360, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 51158 36 100.0 30 .................................... TCAACCTTCATGAACGCGCCCACGGGCCCC 51224 36 100.0 30 .................................... CCATTTGGCGATCTTCATAATATTTTGATT 51290 36 100.0 30 .................................... CTAAATTTTCCGTATCAGAAGTCGGCTAGC 51356 36 100.0 30 .................................... TTCAAAGCAGTTAAAGTCCGAAGGAGATAA 51422 36 100.0 30 .................................... TGTACTAGCAACAGCACATCAGATTGATAA 51488 36 100.0 30 .................................... TAATATTCTCTTTGATTTTTTTGTCAATAG 51554 36 100.0 30 .................................... GAAGTCGTTTGACGCCAAGTTAAAGCTTGA 51620 36 100.0 30 .................................... TTGCCACTTCGATAAGCGGCACTAGCAATC 51686 36 100.0 30 .................................... CAACGGGCGGTCAACGAACAGCACCCAACG 51752 36 100.0 30 .................................... CAATTCTTCCAGCTTTCCATTAGTTTCAAC 51818 36 100.0 30 .................................... AACTTATATTTCTTAGTATGTTCTTCAATG 51884 36 100.0 30 .................................... CACCAGCAACAGTCTTCCTGTTGATATGCG 51950 36 100.0 30 .................................... ATATGCAAACATCCTTTAAATCACCAGTAT 52016 36 100.0 30 .................................... AACTTTACTACTTTCCAGCTGTTTTCCTAA 52082 36 100.0 30 .................................... ACTGACAATCACTAGTGTTAATGGAGGACG 52148 36 100.0 30 .................................... AACTCGTCTACTCCAAACGTTTCTCGCACT 52214 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGTGAGATTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGACAATGATTTAACGAGATTATTCAAGTATTGTCAAGTACATACAGAGACGTTGCTATGGAAAAATGCATATGATAGAATATCCTCAGATGTTAAATTACATGTGGAACTAAATAGAAAACGAATTATAGGTCTAACCAATGTCGTACATTATCTTACCAAAGAAGAGTTTCAGGAACTTGTAAGTCTTGTTAAAGCGACTAACTTATTAGTATTTATAATTGAATTCACAGAAAAGGATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATGTTGATTGGCACTAATGAATCGTTAAATTTTGATTATAAAATAACT # Right flank : CCTCCTACTTTATGATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 133590-133039 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUQA01000058.1 Ligilactobacillus salivarius strain 866_LSAL 147_133606_3026633, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 133589 36 100.0 40 .................................... GGTGATGAAAAATGATTACATTAACAACAGCGGGTTATTG 133513 36 100.0 35 .................................... ATGTTAAAACACAGGATTATCTTAAGGAACGATAT 133442 36 100.0 37 .................................... AAATGAGTAAAAAGAATTTAATGAAACAAGCACATAA 133369 36 100.0 38 .................................... TCTTAACAGTAGCCAAATATGAGAAAGATAGTTCCAAA 133295 36 100.0 39 .................................... GGTGGATACTCTAAACAATGCGAGGCTTCGCCTTGCTGA 133220 36 100.0 34 .................................... TGAAGATAAAATGAATGATCTATTCTTAGAATAT 133150 36 100.0 40 .................................... AGGAACATGGGCGATAGCTGAGTTTGAAGACGGAGAGATA 133074 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 8 36 100.0 38 GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : TGAACCATAGTATCAA # Right flank : ACTCTTTGATCAATTAGTTGATATATCAACAATTATTGACATTTTTAATGGTACCCTAAACGGGCAATAGGTTAAATTAATAAGTATTATTTGGTCAAAATTCAGACAAGTTTTTATTTGTACTACTGTTTCTTACAGCAGTGTAAGTGTATTATAACACAATAAATTGAGGTTTCCTAACAGTTTTCTTTATAGACTCACTTCCTAAAATCGTTATTTGTGAATCATTTACTTCGTTAGGAAGTAAATATAAAGTAATTGCACCTGATTTAGGTAATCTATCTTTTAACACTTTAATTACTCTATCTCTAGTAGAATTTTGTCTTACTTCTCTTTCATACACACTAAATTGCTTCATTGTGAAACCTAATTCTACTAATTTCTTATGATATTTAGTTGCTTCTTTTCTATTCTCTTTCGTGTCTCTTGGTAAATCAAAACATACTAATAGCATCATACTTATCTTCCTTCCTCAATGAAAGTCGGTAATTTCAATCCTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 10224-7548 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUQA01000099.1 Ligilactobacillus salivarius strain 866_LSAL 275_10241_261512, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 10223 36 100.0 30 .................................... ATAATTACCTCTTGCGTGCTTTCTAAGCCT 10157 36 100.0 30 .................................... TGAGTTTGAGCAACAGATTGGTTTTAGTTC 10091 36 100.0 30 .................................... TATTATATAAGGCTTTTCAAGGTGTTATGT 10025 36 100.0 30 .................................... TAAAAATATTGAATATGTAGGGTTTACTTA 9959 36 100.0 30 .................................... TGATACTTGGAATAATGCAATTATATATCC 9893 36 100.0 30 .................................... CTCAAACATTGCTTATTATGTATCTGATGC 9827 36 100.0 30 .................................... AGTGTAGATGTTAATACAATGTTATGCTTA 9761 36 100.0 30 .................................... TGGTTTATATGGTTCTATGTTGTTTACCAT 9695 36 100.0 30 .................................... AAATTCAGCTAAGATCGGCGCTTTGCCTAA 9629 36 100.0 30 .................................... TAACTTCTTGGCAATCTTGTCAGCATCCAC 9563 36 100.0 30 .................................... AAACAGTGCCACCAACTTGTCCAACTTGTG 9497 36 100.0 30 .................................... TCTAGTTGTTTTATCTTTAAATGGTTCTAG 9431 36 97.2 30 .................G.................. CGTTGTTTCTAGCGAAGATGAAACAGGCAA 9365 36 100.0 30 .................................... GGATTGTTATATACGATTGATCCCTATAGG 9299 36 100.0 30 .................................... CGAAAAAATCCTTGAGCAAGTAACTACTCA 9233 36 100.0 30 .................................... AAAATGCAAATATTAAAGATGGTTATAGCT 9167 36 100.0 30 .................................... GCAAGCATGCAGATATTGCACATTATCATG 9101 36 100.0 30 .................................... AATCTCGTTAACAATGTACGTCACTGGCGA 9035 36 100.0 30 .................................... TGCAGATGACATCATATTATACGTGAATGA 8969 36 100.0 30 .................................... TAGATGAATGGTTAGCATTGCATAAAGAAA 8903 36 100.0 30 .................................... ATGGCTACTTGCCAACTGGCGTAAGCGTAA 8837 36 100.0 30 .................................... TGGCACTTCAATCACAAAAACAGTAAACAA 8771 36 100.0 30 .................................... ATGATAATTTAACGATTGATAGCCCTACTA 8705 36 100.0 30 .................................... GTATATTGGAAAGCATGTAAAAACACGTCA 8639 36 100.0 30 .................................... AGTTAACGGCGAAAGCTCAACAACGACCGG 8573 36 100.0 30 .................................... TGCTTATATTGTGTTTCCTGATTACAAGGA 8507 36 100.0 30 .................................... ATAACGATTTTAATTACATCTGGTTGCTTT 8441 36 100.0 30 .................................... TCCATCAATTCCATTGTTTTCTTCCTCCTC 8375 36 100.0 30 .................................... AGAATTGAGTTTTAGCATAAGGCGTTGTAT 8309 36 100.0 30 .................................... ATACGTATATCGGATACTTTATGGGAACAC 8243 36 100.0 30 .................................... ATTCAATTAATGCGACTGATATGTTTAAAG 8177 36 97.2 30 ......T............................. TGGCAAGTAACCATATTGTCCGTTACCTCT 8111 36 100.0 30 .................................... CATCACTTTCTTTTCCACTTAGAACTTCAA 8045 36 97.2 30 ...................................C CGTCTGTCCATTGCTTGCCTCCTGTTTACG 7979 36 100.0 30 .................................... AGACAAACTTTTAGAATTAATAACGAGTGT 7913 36 100.0 30 .................................... TAACTAGTTGATTTAAAAACAACTCTACTT 7847 36 100.0 30 .................................... TTCAGAAATATCATCAGTGTTGTTACGTAA 7781 36 100.0 30 .................................... AACAATCCGTATAAATTGTGTGATTTCTTG 7715 36 100.0 30 .................................... AGGATAAAAAATAAATTAAGAATTAAAGGG 7649 36 97.2 30 ...................................C TCTTCGTTCAACCGCTTAATTGATTGGTTT 7583 36 75.0 0 ......T...A.........T...AG...CG..G.C | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 99.1 30 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Left flank : CAAAACTGCCGATATTG # Right flank : TGAAAAACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAACATAATATTATATGATATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATACGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGTGACTATAAAGTTAGTTTGGATTCAATTTTCGAAAAAACTAGAGAGGGGGAATAATAATGAACTCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 660-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUQA01000051.1 Ligilactobacillus salivarius strain 866_LSAL 124_6244_135350, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 659 35 88.9 40 AGA....-............................ CGAAAGGATGAAGAAAAATGATCGAACTAACAACAGCAGG AA [653] 582 36 97.2 41 ..............C..................... AATGAATTTGATAATATCTTAGTTGCTTTTTCTGGTGGTAA 505 36 100.0 40 .................................... AAGGTAGAAATAAACTGGAACATTTAAGCCTAATATTTTT 429 36 100.0 37 .................................... AAGATTAAAGCTTGGATTAAGTCAATCCAAAGCAGCT 356 36 100.0 41 .................................... CTATACCTTTTTCGTTAGCTGAGAAAGCAAGCGAGGTTTAG 279 36 100.0 42 .................................... CAAATAATTCAACTGAAGAAATGGATCCGTCAAATGTATATA 201 36 100.0 40 .................................... AGAGATGTTTTAGAAAAAATTAGTTCAAAAATTAACTCAG 125 36 100.0 35 .................................... AAATAAAAATATACGAGTAATAAAGGTTATTTAGT 54 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 9 36 98.5 40 GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : TCCTTCATTTGAAGAATGACTAGGTGTTATTACTTGATAGGCTCTGACATTAATATCATTCAATCTATTAATAGTAAATAAAGCTGACTTCATTTGTGGAGTTCCACTAGATAAATTCAAAATTAAATCCTCACCATCCCTAGAATACTTTAAAACTATATTATTTAATATTTCATACATTTTATCGAAAATAAATACTTCACTATTGGAAATAAATCTCTCATCTTTTTTTATTACAGGATTATATCCTTCTATAGAATTTAACGCTAATAAGATATTATTCTCTTTTAGTAAAGCACGCTCAGAGTATATTAATAATATTTTTTCAGGGCGAAATACTCTTGCTAAATGCAATAAAGCTCCATCATGCCTATTTCTTATAGGATCTGTATCACCAATACATGATATTAATGTTGTCATAATTACACCACTTTCTAATTAATTACCTATATTATATATTATTTTTTCTAACTTTTACTCTCCTTCTTATCACTTTAATT # Right flank : TCCTGGTAAACTGTTGACA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //