Array 1 669730-671811 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUP010000001.1 Streptococcus thermophilus strain 13494 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 669730 36 97.2 30 ..........G......................... AACACAGCAAGACAAGAGGATGATGCTATG 669796 36 97.2 30 ..........G......................... AAGGCGCTTGATAGATATATCGAAAGCCAG 669862 36 100.0 29 .................................... ACTATTTGGCACCCGTTGGATTCGATTGG 669927 36 100.0 30 .................................... GAGGCTTCACTTGCTAACGAGTTCGTCTTT 669993 36 100.0 30 .................................... AATTTGTGAGCTCTGGTTTTAGAGTAATTT 670059 36 100.0 30 .................................... AGCATCTGTGAACTTGATGTCTGGCAATTT 670125 36 100.0 30 .................................... TCTCATAATCACCAATGCCGTCAACGTTGT 670191 36 100.0 30 .................................... TAAGAAATCAACGCAGATTTTCAGAACACA 670257 36 100.0 30 .................................... ACTACTGCAGATTTTGAATATCTTACTCGT 670323 36 100.0 30 .................................... GGAAGTCATGGTTAATAATTGGGAATTGTT 670389 36 100.0 30 .................................... GGTAGAGATTTTGTCTTGGCGAGTGTGCCT 670455 36 100.0 30 .................................... CGAATCAGAAAACATATGGATGCATCTCGT 670521 36 100.0 30 .................................... GTGGAATAGATGAATAGACTTAAAGAGTTA 670587 36 100.0 30 .................................... AAACTTACTAGTTGAGAACGCAACCCCTCC 670653 36 100.0 30 .................................... GCAATTTATTCGCTTGATGTACTCACGCTT 670719 36 100.0 30 .................................... GTTTTCAATCAGATTGGTTTATTGAACAGG 670785 36 100.0 30 .................................... AGTCACCTCAAATCTTAAAATTGGGCTGAA 670851 36 100.0 30 .................................... AAAATCAATGGAAAAAGATTGTGGAATCAA 670917 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 670982 36 100.0 30 .................................... TCACATGTAGGCAAATATACCGACGAGGTA 671048 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 671113 36 100.0 31 .................................... CAACGTTGATGAATATTGTTGATAAACTTTA 671180 36 100.0 30 .................................... ATCATGACCCCAACGTGGCCACCTGCACCA 671246 36 100.0 30 .................................... TACCGAGAGATGCTCGTCAATGCCATGTTC 671312 36 100.0 31 .................................... TTGGCGTCGTCAGTGCTCGCAGTTGATTGAA 671379 36 100.0 30 .................................... TAGTCGTGGTGACAGAATTAGACCGTTTAG 671445 36 100.0 31 .................................... CAACGTTGATGAATATTGTTGATAAACTTTA 671512 36 100.0 30 .................................... GAAGATGGTGATGCAGATGTGCTCTCTGAA 671578 36 100.0 30 .................................... GGCAGCATCAAATGATGGTTTTGTCATCGG 671644 36 100.0 30 .................................... TACATCGTGGAAAAACAGTTAAAGCTTCTA 671710 36 100.0 30 .................................... AGCTCTCGTCCAAAGAATGGACCATCTTAA 671776 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTCGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 911070-911823 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUP010000001.1 Streptococcus thermophilus strain 13494 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 911070 36 100.0 34 .................................... AAAGCTTCAAAAAACATATCGTAAGATTTACGGA 911140 36 100.0 36 .................................... TCCACTCAGATTTTTCATTCTTAACAGTAACTTTAA 911212 36 100.0 35 .................................... ATATTTTTTTAAAGATCTAAAATATTGTGCTTTCT 911283 36 100.0 34 .................................... CCATAAACGTTACCCGTGAATACTGCTTGATTGA 911353 36 100.0 41 .................................... ATTGATTGCTTGATACCATTAACGATCTCACTCTGGTAATT 911430 36 100.0 35 .................................... TTTCCAGGCATATTTTTTATAAGTGACGTTTTCCC 911501 36 100.0 36 .................................... TTTTGATTAGTCTTTCTAACATTTCTATCCATTTCG 911573 36 100.0 35 .................................... TCTTTCTTGATAATATTCAAAGATATTGAAATTAG 911644 36 97.2 38 ......A............................. CGTTTGTTTAATTGCAATAATGCTCGCAAACTATCAAG 911718 36 94.4 34 ......A..........T.................. GCTCCTACCCATTGTGGCTCATTCATTTGCTTTA 911788 36 80.6 0 ......A.......................TTTTTT | ========== ====== ====== ====== ==================================== ========================================= ================== 11 36 97.5 36 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTTGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1388667-1386186 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUP010000001.1 Streptococcus thermophilus strain 13494 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1388666 36 100.0 30 .................................... CAAGGAATACAGAACTTAATTCAAACAGTC 1388600 36 100.0 30 .................................... ACCATACAATATCATGGTCTCAACCGATAA 1388534 36 100.0 30 .................................... GTAATTGCCCGTGTCGTAAAAAAGATTCTA 1388468 36 100.0 30 .................................... CGATAAAGCTAATATGTATAAAGAAGTCTT 1388402 36 100.0 30 .................................... TTTCTCTTTTTCAGCGCAGTTTAATGGTTC 1388336 36 100.0 30 .................................... TATCGATGGCAACGCTGATTCCCTGTACAA 1388270 36 100.0 31 .................................... CCATTACAGACACAGGGCAAGGTGGGTACTA 1388203 36 100.0 30 .................................... ACCAATTAAACGTAATAAATTAGGTAGAAC 1388137 36 100.0 30 .................................... AGACTACAATATTGTCTTAATTGGCGATAC 1388071 36 100.0 30 .................................... GGCGTAGCAACACAATTCAAAGAGATTGAC 1388005 36 100.0 30 .................................... CATTACAACAAAGGGATAAGCCGCGCCTTC 1387939 36 100.0 30 .................................... TCAACGTGTTACGGTTCCTACTAACCCTTA 1387873 36 100.0 30 .................................... AATATAGCGTCTGAAGTCGGAATAAAACAA 1387807 36 100.0 30 .................................... CGAATCAAAGTCGAAAGAATACGATGCTAG 1387741 36 100.0 31 .................................... AAAACGGTTCTGAATATGAGTATCTCGTTAA 1387674 36 100.0 30 .................................... GTATCTATGGGGTTTTGGGCTAGGTGAACA 1387608 36 100.0 30 .................................... TCTTGGAGTTCTCTTTGACCGCAAGGCGCT 1387542 36 100.0 30 .................................... GTATCTATGGGGTTTTGGGCTAGGTGAACA 1387476 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 1387410 36 100.0 30 .................................... TACGGAATATTTAAATAATGTTGATGGTAT 1387344 36 100.0 30 .................................... CATTCCCATCTGTGTTCAAAACGATAGGGT 1387278 36 100.0 30 .................................... AAAAATAATCTTTTATCAGAGATTGAAAAA 1387212 36 100.0 30 .................................... CGAGTCAAAGTCGAAAGAATACGATGCTAG 1387146 36 100.0 30 .................................... AACAGCAATTAACACAGTATATACAGAACT 1387080 36 100.0 30 .................................... AACCTTTCAGAAAGAGCTCATGTAGCTATC 1387014 36 100.0 30 .................................... TAAAGAAGACATTCAAGTTAATTATGAAAA 1386948 36 100.0 30 .................................... TATTGACCGCTTCGATGTTGTTCAAACAGA 1386882 36 100.0 30 .................................... TTTTTAACTGTGAAGGAATTAAAGTGGAAG 1386816 36 100.0 30 .................................... AAGCTATATAAGGTAATTGAACCTCATACA 1386750 36 100.0 30 .................................... TCTTCAAAGACTGATCTGACGTGGTCAGAT 1386684 36 100.0 30 .................................... AAAAACTAACTCAACTTATAATGTCATAAT 1386618 36 100.0 31 .................................... AAAACGGTTCTGAATATGAGTATCTCGTTAA 1386551 36 100.0 30 .................................... GTATCTATGGGGTTTTGGGCTAGGTGAACA 1386485 36 100.0 30 .................................... TCTTGGAGTTCTCTTTGACCGCAAGGCGCT 1386419 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 1386353 36 100.0 30 .................................... GTATCTATGGGGTTTTGGGCTAGGTGAACA 1386287 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 1386221 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 38 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTTGGTTGACATCTCCTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAGGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGATCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCACATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //