Array 1 8987-9685 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBR01000133.1 Brevibacillus agri BAB-2500 contig133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 8987 32 100.0 34 ................................ AACAACCATCTGCAGCTTATGCTGTTAGACTAGA 9053 32 100.0 35 ................................ AAAAAAAGGAGTGAATCGAATGGAAAAGGTCAAGG 9120 32 100.0 34 ................................ GATCTCCAGGCCAAATACGATCCGATTGCCGTCA 9186 32 100.0 34 ................................ TTTGATCTGGGGGAGCAGGGGCCGCGCGCGATCC 9252 32 100.0 35 ................................ AACAAGAACAACGCGGAAACTGAGCAGCAGGTGAT 9319 32 100.0 35 ................................ ACTTGGGCGCAGATGAGCACGACCCAGTGTATCAG 9386 32 100.0 34 ................................ CACATTTTTTGCAAAGGACTGGCCGCCTGGTCAG 9452 32 100.0 36 ................................ CATCCGTTTATTAAGAGCATCAACAATCTTTTGGTC 9520 32 100.0 34 ................................ GCCAGGAGCCAAAATATAGACATGTGACCACTTA 9586 32 100.0 36 ................................ GACAAAAAAAGACAAGTTTTGTCGAACTGTTTAGTC 9654 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 100.0 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TGGATGAGTATCCTCCTTTTTTGTGGAAGTAGGTGAATGGTGTGCTGGTATTGATCACGTATGATGTGAGCACAGTTAGCAGTGCAGGGCAAAAAAGACTTCGCCGCGTCTCGAAAATATGCCAAAATTACGGTCAACGTGTCCAAAATTCCGTGTTTGAATGCATTGTCGATTCCACACAGCTTACTTCATTGAAGCTGGAATTGCTCTCGATCATCGATCTGGATCAGGATAGCCTCCGTATTTATCAATTAGGCAATCATTACAAGAATAAGGTAGAGCATTTGGGTGTGAAAGAATCAATTGATTTAGAGGGGCCATTGATTTTCTAGTGCGAATGTGAAGCGCACACGAATTCCCTGGGGGATTCGCACCCGAAAAACGGGTTAAAATGCCGTTTTTTGTCTGCTTTCTCTAAATTATCTTAACGTATGAATGAATTTGAGCGTATTTTGATTACAAATATGAAAATGAAAGCATATTTGGGGTGAAAATTCGCT # Right flank : AGCAGCAAACGCAGATACCGCGCTACCAGCCAAAACGTCGCATCCTACGCGGATGCGTGGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24630-25617 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBR01000119.1 Brevibacillus agri BAB-2500 contig119, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 24630 36 100.0 39 .................................... TGTGGTTGGCAAACGATGGTCGCTTGGATTGGCTAATCG 24705 36 100.0 36 .................................... AAGTACGCCAGCAGATTTGCAAAATGCAGAATTTCT 24777 36 100.0 38 .................................... CACATCCGGTCGTTTAATTACGAGCCGGAGCGTGCCGG 24851 36 100.0 36 .................................... AGCCTCGCCAAATGTCCGCTCGTAATGGCGCTCGAT 24923 36 100.0 40 .................................... GACTTGGAGAATGGGGGGAACTTGGCGGGCAGATTTTGCA 24999 36 100.0 36 .................................... ACTTGCCGCATAATCTGCAATCTTGTTTTGATCTTT 25071 36 100.0 39 .................................... GAGCCAATATTCCGGCGTCTGGATGACTCCTGCGCTCTG 25146 36 100.0 37 .................................... CCGACGATTGGTGCAGGGAAAGGTTGAAGAATTCACG 25219 36 100.0 35 .................................... ATCTCCTCAGCTTCTACTGCCTGACACGCCATGAT 25290 36 100.0 36 .................................... CGTACAGCAAAGTTGTTGGAGCTTAAGCGTAAACCC 25362 36 100.0 39 .................................... GAACCTTCCAAGGCCGGGGATGAGGTGGCAGAATCGCTC 25437 36 100.0 36 .................................... TGAGGAATTTTGGACAATCAGTAGCGCATCTACTCA 25509 36 100.0 37 .................................... CCAGATGAGTGCTTGCTTGGCGGCTCACTCTCTGGGC 25582 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 14 36 100.0 38 GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : TCGAAAAAAAGCTTTTCGACTTTTTTGTTGGACACGTGGCAATTGTAGGACCAGACTACGATATCATTCACGTTCATCCAAAAGGACCTTGGTTCGTTGAAGATATCGATTACTATGTATCTCGATTTAGGGACGGCGATAAGATCGAAGTTCTCCGTCCCAGGAGTGGAGCTTCTAAAGCTGCTAAATGGGCAATCAACCATATTGATGACGTAAAGAAATACTACTTCAATATGGATTTGGATAATATTGAGCTTAGTTATTGTTCTAAGTTCATCTGGCAAGCATTTTACTATGGTTATAATCTCGATATTACCGGCATGGGTCTTACCGATCGCAGTAGAGCAACCCATATTTATCCAAATGATGTTCGAGATTCCGATCACCTTGCATCAACAGAAACCATCGACGTTGAGAAGTAAGAAGCTGAAACCTCGCATTAGCGAGGTTTTTTATTTGAGCGCCGATTTAAGATCTCAGTAGTTTAGCCGGACTTTAGC # Right flank : CCTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 23-715 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBR01000150.1 Brevibacillus agri BAB-2500 contig150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 23 36 100.0 36 .................................... CATACCGCCGTTTACTTTACCTGGTACGGCGACTAT 95 36 100.0 35 .................................... TCTGCAAGTGCGCGTCTATGAAAAGAACTGGGAAA 166 36 100.0 40 .................................... GTTCAACCTTCTTCGTGAGAAAATTGATGATATTTTGAAG 242 36 100.0 39 .................................... CGGATCACTCTCAACAGCTCCATTACAACGATACTTATT 317 36 100.0 37 .................................... GAAGTTATGAAGAAAGTCTAGCATGTATTCCCGATGT 390 36 100.0 38 .................................... CATCAACAGCAACATCAACACGAGATCGAGGTTGAGGC 464 36 100.0 35 .................................... CTCTGTTTGCAGCAGCATACTTCAAAAAGTCTTCA 535 36 100.0 39 .................................... ATAATCCGTTTGCTGTACGGATATAAAAATCTTGTATAG 610 36 100.0 34 .................................... CGTATGCGAAGTCTGTTATACACCGCATTTTATG 680 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 10 36 100.0 38 GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : CCTGCTCGTTAACGAGGATTTTG # Right flank : CTCCTTCCCACTCAACCCCTACAGCCGCAAGCCTTACAGACCCGTTTTTCGAGCAAGCCAAAATTCAATCGCCATTCCTCTTATCCATCGGCTGCCTCTTCCCCTAAAAAACTCTGGAAAGCCTACGCCCACAAAGAGTTCGAGCATCCCCCGGCTTTTTTGACCTGAGAGGATGCTCGCATCATAAAATTCGAAAGCTTAGTGGAAAGTCGTGATTATCCGTGGGAATAGACCTGTGGATGGGCCCATAATGCACACGCACGGATATGTAAGTCGACTTATGGCCTATAGCGTGCGACTGACACCTTTATTTTACTCTTTTTCCACTTTTGTTACAACTAGCTTTCTTCATTCCTTAATAGATAAATTTGGTCAAATCGCGAGGCAGAAACTCCCTGCCAACAGTAGAAATCCGCTTGTCCAGTTGATCTCTCGTCACTGGGCCGATTTTTACAAACATGACCTGGTCTTCTCCATGGTGAACCAGCTCCGCCAGGCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAACCACGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 6937-9303 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBR01000150.1 Brevibacillus agri BAB-2500 contig150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 6937 36 75.0 30 ...T....TTTC...G...T...C...T........ GATGAAAAGGAGCATCAAGTTGGACAAGCT A [6954] 7004 36 94.4 41 .......C.A.......................... TTCTTAACACGCGACGACTCTTTCCCCACACGATTTCGATG 7081 36 100.0 38 .................................... AACTATAACATAACCCAAGCAACCGCTTATAGTTTCTG 7155 36 100.0 40 .................................... ACCAGCGCCTTGTCTGCCATGTATTGCTGTGCCAAAGCCA 7231 36 100.0 35 .................................... TAACCGTAAGCCTGTAACGAAGCGTTCGCTCCAAC 7302 36 100.0 35 .................................... TGGGACGGTGCACAGCAGACCGTAAAAGATGCGTT 7373 36 100.0 36 .................................... ATCTAGTCACCCCAAGGATAATTGTCGTCGTAGTCC 7445 36 100.0 38 .................................... CTCTAGCTTGCTGTCGAAGTTAGCCCTACTGTTGATGA 7519 36 100.0 38 .................................... ATCTGCATCACGGGTAGCAACGCCCGCAGTCAGGTCTT 7593 36 100.0 36 .................................... GAGGATCGTGTCTGTCAACGGGTATTGCACGCTTCC 7665 36 100.0 38 .................................... ACGGAGTGGATTTTAGAGAGGGGTGGTTTTTGTTTCTA 7739 36 100.0 35 .................................... ATTTTCGTTGCCCAGACGGGAGAGAGGAAGAGAGT 7810 36 100.0 36 .................................... TCTCCTGATACGCCCCATCAGACTGCTTTTCTAGCA 7882 36 100.0 37 .................................... TCATATTTATCCTGTAAGCTTCCCTCACTCATTTTTA 7955 36 100.0 36 .................................... TTGATTGTTCGGCTAAGGCGAAGGACAGAGCTAAGG 8027 36 100.0 36 .................................... GTCCTGACATACCGATGTTCGGCGCTCGGTCGAAGT 8099 36 100.0 40 .................................... GCCATTCGCCGAGCCTGCGGACGTCTTCTTTTCCGGATAC 8175 36 100.0 35 .................................... CCCAGGAAACTTATATCGGCAATAGTAGCTGTCTG 8246 36 100.0 36 .................................... GTGCTGCGAGTACGAGATCAAGCACCGCAAGGCTAA 8318 36 100.0 39 .................................... TTGCCACATTTCTCTACACGGGGCTGCGGGTCAGCGAGC 8393 36 100.0 40 .................................... GTAACTTGCTTACTCAAAGTAAGCGTGTAGTCACCCGCCG 8469 36 100.0 39 .................................... GGCACGAATTCGACTTCGTCCGTATGGGCGACTATATGA 8544 36 100.0 38 .................................... ACTATGGCAGGATTGGCAGAACTTTCGCCGTTTTTTCA 8618 36 100.0 37 .................................... CCCCTTTTTGACCATGCCAAGAGGAAAAGATAGCGGA 8691 36 100.0 39 .................................... TTATTTTGGGTCTCGTGAGTCGATGCAGTTGCGTATCTA 8766 36 100.0 36 .................................... CCACGTGGCGAAAGCAAGTTTTCCATATCGTCATAA 8838 36 100.0 35 .................................... CTTCTATTTTGGGAGTTGGTGCTGTGATGGTGGCG 8909 36 100.0 36 .................................... TTCTTTGGTATTCACTCCCCATCCCGTCTCATGGCT 8981 36 100.0 37 .................................... GCTAGCCGTGGACAAGGAAGAAATAAAGGAACTCATT 9054 36 100.0 36 .................................... TACCACTACCTCAACGCTCCCGTCGAAACCATCATG 9126 36 100.0 34 .................................... TATACAGGCCCGCTTTTTTGATGTCGATGCTGGA 9196 36 100.0 36 .................................... GGTTTCTTGATGAAACGCAGCGCGTCCGTAAAGGAT 9268 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 33 36 99.1 37 GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : CGCTTGTCCATGACGTTATTTCCTTTCTTTACTAAGTATGATTTTTGAATTTCAAAAAAAATCGAACATCTATAAGGTATAATATACTATCAATACTAACAGCTATCAATTCTTTATTTAAAAGAGAGTAAATGCTTGTTGCATTTTTCTTCATGTACTATACTTACTAATACGAATTATAGGTTCGTCTAACTTTAGTGCGTGTGCATTGGGTGATTCAAACAATCACTTCTCCACTAGAAGCTTATTACAAAGCTTGCACTTTATTTACAAAGAGAAAAGCCAATGCTCTCCCTTTCCAAATGAAACCAGTTTTCTTTTAATCCATTTTTTGCCTGACTGCTTCTTTTTTGCAAGAAAACGTATCGAGCACCTGTAAACCTCTCACTATGACTATTGAATTTGGTATATATTATTATCAAGAGATCAATGATTTTGAAGTTCACTATAGGTTATTTAATAGAAAGATGCCCCTAACGTAAAGCAGGGGCATCTTTGAT # Right flank : CCCCTGTCTTCTCAATCCCTTGATTCTCAGGCTTTTCTCAGCCCGTTTTCGAGCAGTCTTTTTTTAGGTACCATTTTTCTTGAAATTCAAGGAGCTTTTTTCTTTCCAACTCAGTTTGACGCCTACTCTCCCAACGCTTGCGAGCATCCTTGGCGTTTTTAGGGCTGGGAGATTGCTCGCGTCTTCATTTTTCGAAAGCATAGTGGAAATTCGAAATTATCCGTGGGAATAGACTTGTAGAGGGTCTATAATGCACACGCACGGAATATCAAAACGGCCTGTCGCCTCTAGCATACGGCCGATACTTATATCTTACTTTTTTTCCAAATACAACACAACCGCGATTTGATCCACCCTGTAGAAAATCACCACTCAAGACCTCACTCCTTTCAAGTCGCTATTATAAATATAAGAAAAACAGTCAGGGAAAAACGCCCTGACTGTCCTTTTTTGCGCTAGAGGATATCCGAAAGTTTGTATTCATAGCCATGTAAACCTTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 1858-90 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBR01000281.1 Brevibacillus agri BAB-2500 contig282, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1857 32 100.0 35 ................................ CTCCCCGCCGCCAGCAGCACAATTACCCCAACTAA 1790 32 100.0 37 ................................ ATACTCATCCAATTCGGGCTTACGCTTGAGCTCCACC 1721 32 100.0 38 ................................ CTCCTCCGAATAGTAATCGCAATAGAAAAAGCGCCACC 1651 32 100.0 36 ................................ CACTCAAACCACCGCCGTTACCTCCGTACGCGCCAC 1583 32 100.0 36 ................................ GTCGCGCCAGTGAGCGCTTTGATCGTAGACATTTGC 1515 32 100.0 33 ................................ ATAGACACGAACTTGCAGACGACTTTGAGGCGA 1450 32 100.0 37 ................................ TGGCAAAAACCTCCTAAGAGACAGGATGATTGCCACA 1381 32 100.0 33 ................................ TCTTGCTGGTGCTTGACCGAACGCTCCAGCCGT 1316 32 100.0 34 ................................ TTCCCGGATGTCACCAGACCTTGCTCGACCTTGA 1250 32 100.0 33 ................................ AAAAACCCCAGGCATACTCCATGTGGCGCATCC 1185 32 100.0 35 ................................ AGCTCTGCGATCTCGTGAGCGAGTGTTCCTTTTTT 1118 32 100.0 35 ................................ AACAACTATCTGTTCTTTTGGTAGAAGGTGACATG 1051 32 100.0 33 ................................ AGCAATCGTGTTTTCTTCGCTTCGTCCGCGTCC 986 32 100.0 35 ................................ CGGCACGCTGACGATATCGAGTGAATACCGGTCGA 919 32 100.0 34 ................................ GTGTTATTGGCGCTCCAAGCGTGGAGCAAGCGTA 853 32 100.0 34 ................................ CCCTTTTTAACCATGCCAGCCGGAAAAGATAGAG 787 32 100.0 36 ................................ CGCGAGGGCGCCCGCGAGCTGACGGAGCTGATTCCG 719 32 100.0 34 ................................ AATTGACTACGATCTGTTGAATAGTCCAAAAGTC 653 32 100.0 34 ................................ CGTTTGTTTGACCCGGTCGCAACGGTGGTCAGGT 587 32 100.0 36 ................................ TAGCTCCGACGATCTTTTGGTTTCGCCAGGCCTCAA 519 32 100.0 35 ................................ ACATTCCAAGGTCGGAGTTTATCTCAGCTATAAAC 452 32 100.0 35 ................................ CTACCTATGGGACCCAAAAGCACAGGCAAGGGGAG 385 32 100.0 33 ................................ CGGTTGGTCTCGATCCGTCTGGAACGGCGACAT 320 32 100.0 33 ................................ TATAATAGCTTTATAGTATTTGTTTGTCGAAAG 255 32 100.0 35 ................................ AGTATCTGTCCATATAGTCCGCCGTGTACATGAAC 188 32 100.0 35 ................................ TCTCTGTTTTCTCCACCTTGTTATTGGCTTTTTCC 121 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 27 32 100.0 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CCAAAC # Right flank : TTCCATCGGCGTAAACCACTCGTTTTCTCCGGCCCCTAGTCGCATCCACCCTTCTCATCTATCAAGATCCAACCAATCTTGTAGGAATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38-729 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBR01000356.1 Brevibacillus agri BAB-2500 contig357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 38 32 100.0 34 ................................ ATCGGTATCCTCCTGTGATCGTCGCCTTTACCGC 104 32 100.0 35 ................................ ATGTGGATTGTGCCGTTGTGGACATAGGCGAAGTA 171 32 100.0 33 ................................ TGCAAGTTTTGCAACTCACTGACGATGCCTTTG 236 32 100.0 34 ................................ TGAAGAAATAAAGGCAATGTCGATAGGCATGATC 302 32 100.0 34 ................................ TTGTTGCTCCTTTACGATTCTGCGCGTTTACCTG 368 32 100.0 34 ................................ TCCGGAGCATATCTCTTCGGCTGCAATCGGCAGC 434 32 100.0 35 ................................ ATCGCTCTCCAGTAGTGACGTTGATCGATTGTTAG 501 32 100.0 33 ................................ ATATCTGACATCCTGACTTGTGTTGGCTGGCTT 566 32 100.0 34 ................................ GGCCAGTCAGCGCGATACAACATGATCGCCAGGC 632 32 100.0 34 ................................ ACGTTGTCCGAATGGCAAACCAAGCGTTAGAAAC 698 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 11 32 100.0 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AATAAAAAAGGAGTGAATCGAATGGAAAAGGTCAAGGG # Right flank : GATCTCCAGGCCAAATACGATCCGATTGCCGTCAGTCGCATCCTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 58-889 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBR01000288.1 Brevibacillus agri BAB-2500 contig289, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 58 32 100.0 36 ................................ GCACTGTGTCTTTGTTTATTGGAGATGGCGGCAAGA 126 32 100.0 35 ................................ CCGGAAGAGACGCTGGAGATCATGGAGCAGATTGA 193 32 100.0 34 ................................ CATAGCCATTGCCGAGGGAGAGCGATGGTTGGGC 259 32 100.0 33 ................................ CCCCAGCAAGTTAAAATTCGCGTCGATTATTCG 324 32 100.0 33 ................................ TTAATGACACCCGCCAAAAACTCACCAAACGGC 389 32 100.0 34 ................................ CGGTATAAGAAGGATAACCGCGATGATTCAACTC 455 32 96.9 34 ..........C..................... AACGGCGAGGGGAGCGAAACGAAACATATCTGCC 521 32 100.0 36 ................................ AACGACACGATGGTCCAGGCACAGCGCGGTGTCCAG 589 32 100.0 36 ................................ TCACGTATAATGGTACGTAGAACACTCGTCAGAATC 657 32 100.0 33 ................................ GCGTGTGCTCCCGTGCTCTTGCTTAACAATTTA 722 32 100.0 35 ................................ CGCGGTGGAACCCAGTTACTTTGAAAGTCGCGTGA 789 32 100.0 37 ................................ TGAAGGATGTTGATCCCGTGATCGCCTAACCGATTAC 858 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 99.8 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CTACGCGGATGCGTGGATTGAAATCCTCTTTGCCATGTAACCTCATCCCCCTTTATAG # Right flank : ACATCGCGTGGGAACTGCTTTGCAGCGAAGAGCATGTCGCATCCTACGTAAGCGTCAAATAGCCCCCACCTTGTTGCCAAGATGAGGGCTGGTCTATGCTGGGGTCAAGAGTTGAACACGCGGCAAGTTAGCGGTAACGACGGCGACCAAGGCAGCAAACTGTCCAGGGTTTCTGGATTTTTCAGATCAGGAAGCTGTGGGAGCTGCTCGAATAGGTACGTCAAATACTTGAACG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //