Array 1 305108-304164 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHPC010000001.1 Aerococcus urinae isolate Au-28-U13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 305107 29 96.6 32 ............................C CCCTACACCACCGGACCAAATATAGGATTAAT 305046 29 100.0 32 ............................. ATATTTGTTCACAACCAGCGTCCTGAAAAGGG 304985 29 100.0 32 ............................. AAGCCCCTCTGAGAGCTTGTCAAAGCCTTTCT 304924 29 96.6 32 ............................A GCGACTTTGAAAACAATTAAAGAACGATCTGA 304863 29 100.0 32 ............................. AAGGCCTTGTGGACAAGAGAAGAATCAGTTAG 304802 29 100.0 32 ............................. AAAGACCACTAGGGCAATTCCTACCCTTTGCC 304741 29 100.0 32 ............................. CAATCTCTTGCATGATCGTATAGGTAGTCCAA 304680 29 96.6 32 ............................C AAAAGCGGCAATAAATTTCTCCCAATCATCTA 304619 29 100.0 32 ............................. GACAGGATCGCTGCCAAAGCTTCACAAAATAC 304558 29 100.0 32 ............................. ACTGACTCTATGCACGACTGGCTTGAAAGAAA 304497 29 100.0 32 ............................. GAAAAAGGACTCCGGCGTTAATAACATTTTTA 304436 29 96.6 32 ............................C TACCCTCACTAAGGATAGCCCACAAGCCTACA 304375 29 100.0 32 ............................. TTTTAGCGATCCAGTTAGCCCCTCCAATGATC 304314 29 100.0 32 ............................. AAAAGGAAAAATCACCTTGTTATAACTAATAA 304253 29 100.0 32 ............................. GGGCCGGCAGTACAGGATCACTATTGATTTCT 304192 29 75.9 0 ....................T.AA.ATTA | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.6 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : ATGAAAGATTCGATTATCGAAGTTGGAGCACTTGCTATAAAAAATGGAGAAATTGTTAAAGAATTTGAATGTCTTATAAATTATGAGGGGATTTTATCTAATGAAATCATTTCGTTAACAGGCATTGATGATCAACTATTGAAAAAAGAAGGCCAGGACTTAGAAAAGGTTCTGCAAGATTTTAAAACCTTTATTGGTGAGGAAGATCTTGTTGGCTATAATATCTCCTTTGATATAAAATTTATTAATTATTATTTAAAGAAGCTAAATCTGCCAAAATTAAATAATAAAAGTGTTGATTTAATGAATTTCGTAAAAAAAGAAAAATTGTTTTTACCTAATTATAAATTAGAATCAGCCTTGTCAGCTTATGATATTGACGAAGAAGTTCCTCATAGAGCTTTAGGTGATGTGCATTTGATCTATCGGTTATCGTTGAAAGTAAATAAATTTATAAAATTTATGAATCGAAAAACGCATAATTAAAGGGATCCTTTAGT # Right flank : ATGTGATTGAGTTACTGTGCAATTTATTATTTGAATCATCGATACAAATGCTATCGTCCTTTTTGATGTATAATCAGCTTGAAACTTACAGTGTAAGAAAGGAGCAAACTATGAAGAGATCTTATCCGGCCCTTTTCTATTTTGATAAAGAATTTGACGGCTATTACATAGCATTTCCTGATCTGGACAACGGCGCTACTCAAGGAGAAAATATTTCTGATGCTTTATATATGGCCTCTGAATATTTAGGCCTTGTTTTAGCGGATGCGCTCGAAAGTAACGAAGAGATCCCTCAGCCGTCCAATATTAATGATTTATCTTTGATTGAAAATTATCCCTATAAAGAGGATAGTAATTGGACGGACGACTATGATATGGAAAGATCATTTATATCGATGGTGATGACGGATGTTTCTGAGTATTTAAATCTTGATGATTTAGTTGATATCAGCCTAAGTATCCCTCGATGGGCTGAAAGTTTAGCAGAGGGGGATGGATTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 324160-323644 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHPC010000001.1 Aerococcus urinae isolate Au-28-U13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 324159 28 100.0 33 ............................ TATTAGAAAGGAATTAAGGAATGACACCAGGAG 324098 28 100.0 33 ............................ TATATGGTGACGATGTATTAGTTTTCAGTAAAG 324037 28 100.0 33 ............................ CAGACCTGTCTAGCTTTAATTAGTGAGTTGATC 323976 28 100.0 33 ............................ CTATGAAACATGGAACGTTATGATGTGGATTTA 323915 28 100.0 33 ............................ TAAAATGCCTAGAAGTAAAGATTTAAAAGATTT 323854 28 100.0 33 ............................ TCGTCAATGTCGTTTGGCTCATCAGCAATAAAG 323793 28 100.0 33 ............................ TGAATTACCTATTAACTCTTGAAAACCAATACG 323732 28 100.0 33 ............................ GGACCGCTAAGATCCCCATTTTGCTATACCTTA 323671 28 89.3 0 ........................G.AA | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.8 33 CTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : ACAAATTGCTATGTGTTTTCAAGCTTACCAAAGTGAGAACTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACATGATCTCTGTGTTTACTGGAAGGTTGGCCGTGGTAATCTGATCAAATTACAAATTTACCGGATTATTGAGTCAGCGTATGACTTTGGCCGGCGTGACAATGCCTTATTATGTCCGTACTGTCAGGAACAGCTGGGCTCCTTGAGTGAACATAAGGGCCGGCCGTGTTATTTCTTGCATCGGGGGCGAGTACAGACCAAACGTTTGCAGCGTTATAAATGCTAGCCAAAACTGTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTAGGAATTACAAAGCTTGAAGTTATAGGGATCTTTTAGT # Right flank : TCGAAATGGTGCTTTACTTACAAGCGTATTATATGATGATAGAAAGTAGGTAAGAATTAATGACAGAAGATAAGAAAAGACCTCGTGGCCGCCCAGCAACAGGGCGGAAGCGCTATAAAACTTTGAATATGAAATTCACGGAAGAAGAAAGAATGTACTTAAAAAATCAAGCAAAAATACATGATCTTACCTTATCTGACTATTTTCTAACAATAGCCAAGGAATATGAAAAGAAGCATTAGCTGTTAGATTTTTCCGCGCTTATTTGGAAATTGATAAAATTTGATTCAATAGAGGCTTTAAAGAAGTCTCTTTTTTATTAGGCTTGATCATTTTTTCTTTTGAAATCTTCAGCTCCAATTATCCAAGCTTAGTAATGAACATGCTATAATATAAAAGTAAAATAAGTTTATCATCCTTTCCTGTGCTAGGGAGGAGATTTAAAGCAAATAGGCATCATTGTAAACTTTAGGAGGTAGTAGCTTATGGCTGAATCTACT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //