Array 1 125231-124423 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQDR01000006.1 Yersinia pseudotuberculosis strain 2888, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 125230 28 100.0 32 ............................ ACCCCAAGTACCACCAATAGACTCCCAATATT 125170 28 100.0 32 ............................ GTTAAAGATGCGCTAACGGCTATGATTCAAGT 125110 28 100.0 32 ............................ CAACCCGCTGACCGGGAGGGGGAGACCATGAA 125050 28 100.0 32 ............................ AGTGTACGAACAATAGAAGAGATTAATTTCAT 124990 28 100.0 32 ............................ GATACAATCATCCTATTTGTCCTATCCAGAAT 124930 28 100.0 32 ............................ TGGTATCAAAAGCAGGTTGAGAATCTCGACAC 124870 28 100.0 32 ............................ AATTGTGAAGCGACTCAGGAAGAGATTGACTA 124810 28 100.0 32 ............................ GTCGCCGTTTAGTTGATGGGAAAAATAGTGCT 124750 28 100.0 32 ............................ TAAATCTGAATCATGAAATTCTATCTCAGATA 124690 28 100.0 32 ............................ GGGAACTGAACTGATTTTGAAATATCCCTTGC 124630 28 100.0 32 ............................ TCCACGTTCTCTGGATCAACACGATAACTTGT 124570 28 100.0 32 ............................ CTGACCACAAAAAACGGTTAAACAGCACTACG 124510 28 100.0 32 ............................ GTCAACGCTTCACTCCTTGCGCGGGGTATAAC 124450 27 89.3 0 .....................CC.-... | T [124425] ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 135417-136764 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQDR01000001.1 Yersinia pseudotuberculosis strain 2888, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 135417 28 100.0 32 ............................ AGCGACAACGAAGGGCATGATGATGGCTTTGA 135477 28 100.0 32 ............................ ATAATCGTATCATCATTTTCAATTAATTTGTC 135537 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 135597 28 100.0 32 ............................ AAAAAATCTGGGATATTAAACGCTGTTGCACA 135657 28 100.0 32 ............................ CATTCAAAAGCGAGCAACAGGCCAATGCAATA 135717 28 100.0 32 ............................ ATCGGCTGGGATGTTACTCAGGAAGCGCAGAT 135777 28 100.0 32 ............................ ATCACACATAATAAAATCATTTTTAACGTACA 135837 28 100.0 32 ............................ TATAAGTTGTGTCTTTTAAACGCTTTGAACGC 135897 28 100.0 32 ............................ CGCCAGGCAGAATGCTCTCCGGTTCCTCACTA 135957 28 100.0 32 ............................ TGCGGGGGTGTCGGTGCTGCCGCCTGTGGTAA 136017 28 100.0 32 ............................ CGTTAGTTACCGCACGACCGGCGGTCGCAGTG 136077 28 100.0 32 ............................ TAACTTGAACTCTTCGAAATACATTCGACCTT 136137 28 100.0 32 ............................ AATATATTTACGGTGGAGGTGTTGCTGAAAAT 136197 28 100.0 32 ............................ TCATATCCCTCAGAATCAAAAGGTAGAAATGA 136257 28 100.0 32 ............................ GCTGGAACCCACTGACTTACATTGATCGTAAC 136317 28 100.0 32 ............................ ACTCAGCCACACCAACATACTTAAGCCCAAAA 136377 28 100.0 32 ............................ ATGCCGCAACGCCACACTCAAGCTGCTCGCGC 136437 28 100.0 32 ............................ ACCCCCCCATTTCTTGAAGTGCTGATAGTGGC 136497 28 100.0 32 ............................ TTGCGGTAATCGCTCCACGATGGGATTTTGAA 136557 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 136617 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 136677 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 136737 27 85.7 0 ...................-A.A.C... | T [136761] ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //