Array 1 242729-241374 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDO010000001.1 Salmonella enterica isolate 0197_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242728 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 242667 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 242606 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 242545 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 242483 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 242422 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242361 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242300 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242239 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242178 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 242117 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 242055 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241952 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241891 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241830 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241769 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241708 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241647 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241586 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241525 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241464 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241403 29 96.6 0 A............................ | A [241376] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260842-258861 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDO010000001.1 Salmonella enterica isolate 0197_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 260841 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 260780 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 260719 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 260658 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 260597 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 260536 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 260475 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 260414 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 260353 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260292 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260231 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 260170 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260109 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 260048 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259987 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259926 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259865 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259804 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259743 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259682 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259621 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 259560 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 259499 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 259438 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 259376 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 259315 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 259254 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 259193 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 259132 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259071 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259010 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 258949 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 258888 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //