Array 1 454055-455547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQUJ010000002.1 Salmonella enterica strain S4 NODE_2_length_633240_cov_119.620775, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454055 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454116 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454177 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454238 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454299 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454360 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454421 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454482 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454543 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454604 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454665 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 454726 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 454787 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 454848 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 454909 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 454970 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 455032 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 455093 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455154 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455215 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455276 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455337 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455398 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455459 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455520 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471679-473582 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQUJ010000002.1 Salmonella enterica strain S4 NODE_2_length_633240_cov_119.620775, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 471679 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 471740 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 471801 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 471862 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 471923 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 471984 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 472045 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472107 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472168 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472229 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472290 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472351 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472412 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472473 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472534 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472595 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472656 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 472717 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 472778 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 472839 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 472901 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 472962 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [473004] 473004 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 473065 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473126 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473187 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473248 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473309 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473370 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473431 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473492 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473553 29 96.6 0 A............................ | A [473579] ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //