Array 1 234127-234803 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 234127 35 100.0 35 ................................... CACAGGTAAACATCAAGGTACGTGGTCAGGAGAGT 234197 35 100.0 36 ................................... TGGCAGCTATGCTACACTCTCTCTGAGTAGCGTCGT 234268 35 100.0 34 ................................... TTTGTGTGGGTTTTGTTGGCATCACTGCGGTTTT 234337 35 100.0 37 ................................... TTATCACTAAGTCTGGTGCTTAATTCCTGACACAACT 234409 35 100.0 33 ................................... GGTAAAGGACTCGAGATGACTCTCGATAGCCGT 234477 35 100.0 38 ................................... AAACGGTAATCAGTATGATCTTGATATTTTTGTCGCAG 234550 35 100.0 36 ................................... TATTCCGATGGCAAAGGACTCGAGATGATTCTCGAC 234621 35 100.0 40 ................................... TTCTAACGAAGAAGTAAAGAAGAAGTCTGGCTTTGGTAGC 234696 35 100.0 38 ................................... ACCTGCTCAAGACACAGACTTGACAGTGGACTACCAGT 234769 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 10 35 100.0 36 GTTTCCATTAGTTCGACTTCCGAAGAAGTTCAAAG # Left flank : CTAAAATTTTCCTGGGATGATGTAGATGGTGCAACAGTCGTCGGTCTTGATGCACGAGGAAAAGCGGTTGAGCAAATCTTCGACCTGAATTCTATTCGCGGTACTAGAAAAGAACTAATAAAGCACCTTACTAATTACGTTCGACAAATACTTAGCTTGCTAAAAATTGCTCTGGAAGCTGGTAACTCTTAAGCAATAGCATTGCTTCTAGAACATTGCCAGCCAAGTTCTGAATACAGTGCTTTTGCTCGTATTCATGTTCTCCCTTTCCTTGCTCACCATTTTCAGATTCCAGAAGCGATCGCGCTTTTAAAAGAATTCAGCAAGCAAAGTCCAGAGTATGCAACTTTTGTTCGTATTGACCAATTTCCTGGGTAAGGAGGTTTTAGATATCCATTGTCTGGGTTGAGATGTTGGTGAGGGATTTCGTAACAAGTAAGGAGTAAATAGACACATTGTAGGGGCGCAAGACATTGCGCCCCTACGGTCTGTGCTTCCTG # Right flank : GCAAAAATCAGTGTTACTTGAAGCATAAATTGGCAAAATTGCAATTTAATGCTTCCACTTTGAGTGTTACTTAAAGCAAAAAGTGGCAGTTTTTAAAGCATAAAGTGGCAGCAGTCAGTTGAAACAGTAATGGTAAATATTTGTATTGAAGCCAGAAATTGAATTAGCAAAAGTCTAAATTTGTGGTAAGAGCCTGTTGCGTGCTTTGAAGGCTTGGGGAGTCAGTATGTTGAGTGACCTTGAGTTCAATGATTGGTGTCACTACGTGAATTTACCACAAGCGGCTCGGCAAGTCATCTCCCAAATCCGCGAGTCTCAACCAATCCGGCGAGTGAAGAGTAGCGGGATTAATGTTAGAGGCGACTACGCCAGTCGAAAAATGGCAAAAACCATCCAATTCGAGTCGCATTCTGTCGAATTACCAGGTGTAGAAGAGTATGAAGAAGATTCAGATGTCCTGGAATACTACGACCAACCTTATCAAATAACTCTAGAATTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAGTTCGACTTCCGAAGAAGTTCAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 362728-364613 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 362728 36 100.0 37 .................................... AAGCTGAGAGAATCCTTGATTTAGCTAAGAAGCTAGT 362801 36 100.0 35 .................................... TAAAATAATGGCATGGCTAGTCAAAGCCATTGATC 362872 36 100.0 35 .................................... GAACTGGTTCGGAACAACCAAGTAGATGAAGTCAT 362943 36 100.0 35 .................................... TTCTAACATTGTTTTTGTACGTTAAATATTTGAAC 363014 36 100.0 35 .................................... ATTTAGCTGCTAGCTTCCCTGTTTCTTTTGCAATA 363085 36 100.0 36 .................................... ACCTGGGCAGCTGCTCTTCCTTCAACTGAGATGCTC 363157 36 100.0 36 .................................... CGTAGCATACGGAGAGCATCCCAATATATCCATCCA 363229 36 100.0 36 .................................... AAATTGATGAGTGTAATAGATGCTATCATTGCGAGT 363301 36 100.0 35 .................................... AATCCTAAATTGGTTCAGTTGCCACATCTTCAAGG 363372 36 100.0 34 .................................... ATAACTTCTGGGTTTGCGTATGCTGTACTAGTTC 363442 36 100.0 35 .................................... GAGAATTGAAAAAATTCAAGCCCGAACATACAAGG 363513 36 100.0 34 .................................... TTGTCGCCTGAGCAAGTTATTGCTCTTTGCAAAT 363583 36 100.0 35 .................................... GACAGCAAACAAGGGAGCGCTTCAAACCCCCGAAC 363654 36 100.0 34 .................................... TTTTGGCTAAAAAATCTCCCGCTGCCAAAATGCG 363724 36 100.0 36 .................................... ACAGAAGACGTAGTCAATAACGCAGCCAACAACGTT 363796 36 100.0 36 .................................... AGTCAACCCCAAGGTTTAAATCGTGTCGAGAGCCTG 363868 36 100.0 37 .................................... TACTTTGATCTATTTCTTCAATCTTGTAGGCATCATC 363941 36 100.0 35 .................................... GCTCCCGATTGAATATTTATGGTTGCATTATTGCC 364012 36 100.0 36 .................................... TAATACTTTCCCGATCGCCCCACTGGACGATTAATA 364084 36 100.0 34 .................................... TCACCTTTAAGCACTTCATCTAACACGCCACGCT 364154 36 100.0 35 .................................... ACAGTGTTTGCGTTGGTGTTTGCGTTGTTGGCTGC 364225 36 100.0 35 .................................... GTGGCACTGCAGGCGATGCAGGGAACCAAACCCAA 364296 36 100.0 35 .................................... AATGCGAGATTCTAGATTCAATCGAGCGCGATCGC 364367 36 100.0 35 .................................... GAAGCAGTCAAGGAAGCTATCAAAGATTTTAACTA 364438 36 100.0 34 .................................... TAGATTGCGTAAAATTATGCTGTCTTTGTAGGTT 364508 36 100.0 34 .................................... TGCGTTAAGCAGAGAGACCCTACAACGTAGGCAT 364578 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 27 36 100.0 35 GTGTCCTAACCTAAGATGCCGTAAGGCGTTGAGCAC # Left flank : GGTGCCAAAAACGCTGGCGCAAGGCTTACAAGTTGTTAGAAGGTTACGGGGAAAGAATCCAATACTCTATATTTCGCTGTTGGCTCAATCAGCGCACCCGCGAAAAATTACGCTGGGAACTCGAAAAAATACTCACAACTGAGGATGCTATTCTCTTCCTGCGATTGAGTAATCGCTGCCTTGAAGACATCCATAAGTATAACCGACCTAGCTCCTGGCCTCACGTGCAGGAACCATATCTCATCGTTTGACGCAAGCACCTGTGAGTGTGAAGTCTAGTAAAATGAATTTGTAGCGCAAAACCTTTACCATTAAAGCATTTAGGGACTTTTTAACTCTTTCTAGGTGCTTGCAAATCGCCAAATGCGCTCTAGAATAGGAGGTCTAGCTTGTACATTTTCTTTGGAAGCCTTCAATTTTTAACCAGTAGTGCCATTTCTCAACAGGTAATTGTAATATTGGTACAGAGCCTATCTCTGGCAAGGCTTTCAGAGACCGCC # Right flank : CATTATCTACCATAGATAAAAATCTAAGGCTTTTGATCGAAATAGTTGCTTTTTTAACTCTTCAGTGGGACTGGCGTGAGGGTCAAGAAAACGAGAACTTGCTAAAATCAAGTGTAGATATTGTGTGATAAAATTCGCTTATGAATCGGGCAACGTTCCCAGATGTTTTAACTCTTGAAGAAGCCTCAGAGTATCTTCGGTTACCTGTTGAAGCAGTTCTGCGTCAAGCCTTACAGGGGAAGATCCCAGGTCGCAGAATTGAAGATGATTGGAGGTTTTTAAAAGCTGCGATTGACGAGTGGTTACGTTCTCAAAGTGGTCAAACTATTCTCCTTCAACAAGCAGGTGCCTTGGAAGATGATAATTCTCTTGCTCAATTGAGAGCAACAATTTACCAGGCAAGGGGACGATCTGAAGTGGATGAGGAGCCTAGTGCTTGATGCATTTGCTGGATACTGACACACTGACCCATCTTTATTCCGGACGGTCAAGTGTAGTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCTAACCTAAGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 451790-452566 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 451790 35 91.4 39 ....TTA............................ AAAAATCTCCTAGAAAAAAATGAAAAAGGACAACTATGA 451864 35 100.0 35 ................................... GACGTGTGGACCGTGACAGAAAAGGTCGAGGAACA 451934 35 100.0 40 ................................... AACTTATCTGAGTTACCAGATTTCTCTAGAGTAAATTTCT 452009 35 100.0 41 ................................... TTCTTGGACAATAGATAAAACAACGAAAGGGTTATACATTT 452085 35 100.0 39 ................................... TAACAACCCCTACCCATGTTACTTATAAAGACGAAAAAT 452159 35 100.0 42 ................................... TGGCTCCACCGCTTCCTCTCATCGAGGAACCTTGACCCGATT 452236 35 100.0 40 ................................... TCTTCTACTGGTGCTACTGAAACCTACTTTGAGACTGACA 452311 35 100.0 45 ................................... ACTTGCAGTCTATTGATGATGTTGTTACTGGCTTCTTTAGCTTTT 452391 35 100.0 36 ................................... TTGAAGGTCAAAAAATTGACCTGCGGTATCAAGACG 452462 35 100.0 35 ................................... ACTTTTTCTTCCGTCATTGATGACACTCTTTCCGA 452532 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================= ================== 11 35 99.2 39 GTTTCCGTCCCCGTGAGGGGAAGAGAAATGTAAAC # Left flank : ATGATGAGAATTTAGTACGTTTAGTTCTTCAATTATCTATTAATGAACGGTTATTATTAGTAGAGGCAATTTCCGAATCTATTCGCCACGATAATAGCCTTAAGGCTAGTTAAAAATTGTGTATTCCATCGCTATCCATATCAAAGGTGTTTGTATCCACAGACACACCCACCGACACCGCACCAGTGAAATGAACCATACGCCTATAATCTTTGCGGGATGATTTTATTTTCTCTGTCAGTTGAAAAACTTAATTCTTGGCGCTCTTGGCGTCTTGGCGGTTCATTCTTCATCCCCATTTTATGCAACGCCCAAATAAATGAACCACACTATGCTCTTGTGGTACGGGCGTCCCGCCCGTGTATTAGAGAGGGCGGGCGAGGAAGCCCACCCTAGAGTCAAGTAGTCTATTAACCTGAAAATTGCTGTAACTACATGGATGTTGGGCCGCGATCTATGTAAACCCGACGTAGAGGAAATGGTACTTTCCATGCTCCTTT # Right flank : CCCTACCCTTCTAGACTCCTTACCAGGATTGACTTTGAAGGTGCTATTTTCGCGGGGGTCTAGTTGCTATGTCAATAAGCTTGACTTTATTGACAAAAACTGGTTAAGACAACCGCTTTAAATCCTTAGAGTATAAGGCTTTCGCGGGGGTGAACGAAATCACAAGGGTTTCAACTATCGCTAGACCCCCGCGAAAAATCTAAGTGTTGAAAGTCAAAAGCAACACTTTTACTTTCATTTGGAAACTTAATATTGAGTTGTCAAGGTTCTGTTGAGGTTTGGCTTTAATTTTTAATAGTATAACAAATTACTTCTCACTTTTCAACACCCACCTTGCTAACTTCGCGAATATTCCATCGACTTACATATTTTTTATCTAAAAAATATCGGGATACCCAAAACTAGACACTGGTTACTGGTCACTGATTGGTCTCTCCCTGACAAATCCATGCTCCCCAGTAAAGTGGATGTTCAAGTGGGGTATCTTCTTCTTTGGTTTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCGTGAGGGGAAGAGAAATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 4 461358-462329 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 461358 35 100.0 37 ................................... TTCGTCCGACGAACTGGAACAGTCGTCGGAAAGAGTG 461430 35 100.0 36 ................................... TTTAGCCGTCGTCTCTTATTCCGTCGTCGGAACGAG 461501 35 100.0 39 ................................... CAGGCACCAAGTAATGTGAGGTATTTTACCGTCTTTGCG 461575 35 100.0 35 ................................... GTTAGATCTGGTGTCGTTACTTACACCAGTTTTGG 461645 35 100.0 35 ................................... TTTAATTGGCTCAAGATCAAGATTTTTGATAATCT 461715 35 100.0 36 ................................... TATTATCTGTGCTGGTAAAGCTACCAGCCGACACTT 461786 35 100.0 33 ................................... CTGTATCTGTAGGTATATCCTTCGCCTGTCCTT 461854 35 100.0 41 ................................... TTAAAAAATGTAGACCCTAGAGTTTTTAGCCAGCGTCTAAC 461930 35 100.0 39 ................................... TGCGTGGATGCTCCACTCAGAGTTTTGTAAAGCTGTCCA 462004 35 100.0 39 ................................... TCCAACTACTCTCATCGTAAGCTTTACTAGTAATTCGAG 462078 35 100.0 37 ................................... TTTTTTGATTGGCCAATAGGTTTTTGCTTTCGCAATT 462150 35 100.0 37 ................................... GATCGTCGGAGTACTCCTTGGTCTCACGGGGAACTGA 462222 35 97.1 38 ...............T................... CCAGAAATCACTATTAGCATCATATTTTGCATAATAGT 462295 35 94.3 0 ............................T....C. | ========== ====== ====== ====== =================================== ========================================= ================== 14 35 99.4 37 GTTTTAATTCTTCTTCCCCTCACGGGGACGGAAAC # Left flank : GAATCTAGCCTACTGAATTTATCTGATAGGAGAGTAAAATTTATATTAAGTTGACAAATCGTGCTTTAAAAATGAAGAGTAATTTGTTATACTTCAAAAAACGGAACCTTGACAGTTTAATAAAAGAAACTTCCAAACAAAAAATGTCCCGAATTTTTCTGTGGGATTAAGTGTCTTGCCCGTTGTTCATTGAGATAGCGATCGCGATGCTTGTTCCATAAGAAGGGAAAATTTGTCTTTTGCAATTCCCCTAAAGTTTCCAATTGAAAGCTAAGGTATCACTTTTTGCTTTCCACACGCAAGCTTTTCGCGGGGGTATGGCGATCGCTGGAACGTTGATAATTTCGTTGACCCCCGCGAAAGGTCTGTAGTGTAAGAGTTTGAGATGGGTGTGGAGATGAGTTATTGACACTAAAACACGCCTGTTGACAGTAAAACTACACCCCCCGCGAAAATGGCATCTTCAAACCCAATTGTAGTAAGGGTTCCATCAGGGTAGG # Right flank : CGACTATTGGTCGCACATGAGAGTGAGTACCGCAGAATTACTCTTGGCTAATGTCCAAGCCAATACCAGCCTGAAGGGGCATCATAGGTAACTGTGATGTCTCAGATTGCTCTGATGAATGGTAAGATTATCGAAACGGCATCATGAATAGAGAATGGAGACAAGCGGTATCATGAATGACTGGAATTTGCCATGGGAAGGCGGATGCCGTTGCGGACAGATGCGGTTTAAGGTGAGTGCCGTCCCTCTGCTTACGATGGCTTGCCACTGCACGGGTTGCCAGCGAATGACCGCCAGCGCTTTTTCTTTAAGCGTCGCGATCCCCAGTGAAGGGTTCTCGCTACTGAAAGGTCAGCCGGTTATCGGCGGCTTGCACGGTGCGGCTCGCCACTACTTCTGTCCGCACTGCATGAGTTGGATGTTTACTCGTCCGTCCGGAATAGACGAGTTCGTCAACCTTCGGGCGACGATGCTGGACGATGCGTCATGGTTCATGCCAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCTTCTTCCCCTCACGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 5 1165217-1166065 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1165217 37 100.0 36 ..................................... ATATATCTATTTTGTTAAAAACAAGAGGCTATGCTA 1165290 37 100.0 36 ..................................... GAAGAGACTATTAAACGGATTGTTGAAAACTGCGAT 1165363 37 100.0 38 ..................................... TATTGCCATATGCTTACAATTGCGCGTGGAAACCAACG 1165438 37 100.0 39 ..................................... GACAAAACAAGAGGATTTTAGACGCTCGTAAACTTGGCA 1165514 37 100.0 37 ..................................... ATTTATTGGCACCACGAACTTATGAGCGTTGGCTAAA 1165588 37 100.0 38 ..................................... AGCACTTTAGCCGGAACACTTATGAGGACACCTCCGCG 1165663 37 100.0 37 ..................................... CAGCAATTAGCAATTGACTTGGCGAGCGATCGCGCTG 1165737 37 100.0 35 ..................................... ATAACATGGTTGGCAGCTACGCCCGTAGTGCTTCG 1165809 37 100.0 36 ..................................... ATTTATATTCAAGAGTCCAGCTTGTATGTGTTCCTG 1165882 37 100.0 35 ..................................... ATTTTCAAGAACATTATCATATTCAAGATCGTCAT 1165954 37 100.0 38 ..................................... ATAACATATTAGAGGCTTACCAACAGCACCCTAGGTAT 1166029 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 100.0 37 CTTTCAATTAAATGAAACCCGCTTGCGGGATTGAAAC # Left flank : ACGAGGAGTGACTCAGATCGTGGACGAGCAATTTCCGAAGGATATCAAGTACATATTGCTGAGCCTTTTGAACCAGTCGAGTTGGTAGCTATTTTTGCCAGCCTCACCAGTCGTCCAGATTAACCAAAAGATATTCCAGTCTGCGATAAACTATAACACAGGTAGAAAAGTTCATTAACCCAGAAGATTCTCTGCGAATCTCTATATTAGATTATTTAGATGCAAGATCTGTAAAAAACCATTACCTAGGTTTCCAATAAACCTCGACAAGACGATGCCAGCACCCTATGATGGAAACAGAGACGAAATTTTGGCAGGGCGAAGCGCGGTCGAAAAACCGGGGGGTGCTGCCAAAACGCCAGAACCTTGACAACGTAATATTTCTAGCTTTTTATGAAGACACACACAGCGAGCGATGGAAGCCTGAAATGGACTTTCGAGAGAGGTTTGCCAAAATGCCACGCAAAACTCCTTTAAAATCGTGCTTTCAAGCTCCCCCA # Right flank : CGTCTGGCTAAATTGCAAATAGCGATCGCACCTCAGCTTTCAATTAAAAATGCACAGCAATTAGACATTTCCAAAAATTAATTATGCGTTCCTGAAATCCTTGTAAAGAAGCGCCATAGCGCATCTCGATTTTTTTCCGGAGATGTCTATTGGATATGGAATTACGACGGTGAGTGTGCTGGGCAAAGCGAAAGATTTTGTAGTGCTGATCGCAATGTATACAAGGTTGTAGGGGAATTGCGGCTAATTGATGGTTAGAGTTTTGTGGTGACTAAGTAGTGATGTGGCTGGATGCGTAACTGAATCCTCTGACAAAAGTAACTCGGCTCTGGGATAAGTATCATCCCAAAATTGGGTGCAAAGGTCTGGTCGCTCTGGAGGGTTAGCGGTGTAACAGAAGAATAGCGTTGAGCGCTCTTGTGTGCGTATTGTACCGTGATGTAAAACATTTTTTGTATCCACAATAACAATCGTACCTGCTAGACCTGGACAAGATTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTAAATGAAACCCGCTTGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 6 1339883-1341245 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1339883 37 100.0 34 ..................................... AACAGTAGCAGCAACTGCTGATAATTCTCCTTAT 1339954 37 100.0 37 ..................................... GTGATGGCCGCCACCGCCGTACAGCTTAGCGATCGCA 1340028 37 100.0 36 ..................................... GAGCAATTTAACCTAGCAGAAGTCAAAATGCCGCGA 1340101 37 100.0 36 ..................................... TTCTGGCGATGGAGCTGTGCAAATTGGGGGGAACAA 1340174 37 100.0 35 ..................................... AAAACGGAGAAACGTAATCGGCAGATGCGGGATGC 1340246 37 100.0 38 ..................................... TAAATGGCGATCGCCTTTGGAATATATCTATAAGCTAG 1340321 37 100.0 40 ..................................... TAAATGGCGATCGCCTTTGGAATATATCTATAAGCTAGGA 1340398 37 100.0 37 ..................................... GAGTGAGATTGGGATAGCGCGGGACAGCCGTGTTTAA 1340472 37 100.0 39 ..................................... GAGTATTAATTGAAACCACGATTGTAGCAATTCCTCCAG 1340548 37 100.0 37 ..................................... AGAATATGCCGAGTTTGCTGCTAAATGCGTAGCAGCG 1340622 37 100.0 38 ..................................... CAATCAACGATTTAGAAACTAGCCGCAAATTGATTGAA 1340697 37 100.0 36 ..................................... GAAGCTAGAATTGCTTCTTCAAGTTTCTCTTTTTTG 1340770 37 100.0 37 ..................................... CCCAACCTTTCCAAAGCGACAAGTGAAATTCTCTCCT 1340844 37 100.0 34 ..................................... AACACTCAAGGCAATGCTTTAAGAGAGGCCGCAG 1340915 37 100.0 36 ..................................... TCAAAACTCTTAGTTTTTCATCTGCTTCGTTAATAA 1340988 37 100.0 38 ..................................... AGATTTTTGAGGCGGTGAACTTTCACTCCAGCTTCAAT 1341063 37 100.0 36 ..................................... CAAATGGTTGATTATTGAATCCAGTTATACAATTAG 1341136 37 100.0 36 ..................................... TTGCTATTTCTGGATGACGCTGGAAGAAAAATGCAA 1341209 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 19 37 100.0 37 GTTGCAACTTATACTAATCCCTATCAGGGATTGAAAC # Left flank : AGAAAGTGGATCGGGTGCATATCAAAAACCCCTTCAAGCTTCTCATGCTGGAACAGTGTATATTGTTGCAGGTACATCCGGCTTTGCCGATGGAGTATCACCCCATCCAGCAATGTATACTTCACTCAGTATTCCCGGATCGCTGGTGATAGATGCACGCGGGAAAAGACTTCATATCCAATTTGTTGATCACGAGGGCAACGTTAAGGATGAGTTTACAATGGTGAAAACCTGCTCTTTAAATCCAACTTAGTTGTGATTTTCTTTATCAAATTCGCGGATGGGTAGCTGTTAGAAAAGAACTTACCCAAGAAATGGCTGGATTCCCGTTAGCGTAAGGTTTGGAGGCGAGCGTATAACCTGACCCATCCGCGCTCCTCACCCAGACTGGATTTCAGCCATTTTTACTCTACTCAATTTCAATTTTCCGTGCTATGATTAATCCATCCGCGATTCTGAACCATGAAAACCACATAGAGATAAGTTTTCCAGCTTCTGCT # Right flank : CTCAATAGGGATTAAAGTTGAGATATCTAGTTGTGGGCGATCGCCTCAAAGAATTGAACGAAGAACATTGAAACTCAATAGGGATTAAAGTTGAGATATCTAGGGGATACTGACACCCTATCCCTGAAGTTAGTAAAATTGAAACTCAATAGGGATTAAAGTTGAGATATCTAGACCACTAGATTCCAAAGCATACTTCTGTGTTGAGGGTGCGTTTATCGGCGGTTTTTGAACTCTTGGATGTAGGCTTAACAAGCCCCCTCTCCCCATGGGAGAGGGGGTTGGGGGTGAGGGCTTTTTCCATCTGCCCTCTGCCTTTTCTTAGTGCCATTCCGTTCCTCAACCCAACTTACGATGAGCGAGATGAATGACATATGTTGGATTGCCATACTAAAAGTCAATGCTTAGGGACTTCCAAATAAAAAAATCTCCCAAAATTTCTTGTGGTGCGGGCGTCCCCGCCCGCCACTAATACAAAACGGGCGGGGACGCCCGTTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTATACTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 7 1708683-1709013 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1708683 37 100.0 38 ..................................... TAATATGAACGCCGATTTATCACGGAAGCTAGCTGGGG 1708758 37 100.0 36 ..................................... CAACCTCTAGCGCGATACCTAGTTTCTAACAAGAGT 1708831 37 100.0 35 ..................................... AACTTACTAGAACCTACATCTATATTATCTAAAAG 1708903 37 100.0 37 ..................................... GAATGTCATTATTTAACCACATATCAAAATCTCGAAT 1708977 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 37 CTTGAAACTCAGCGATTCCCGGCAACGGGATTGAAAC # Left flank : CATTCCAAGTCATGGGTGAATTAGGACAAGATAAGCGGAGATTTAGAAATACCTCTAACGTAAATTTACCAAAACCTACAACAAATATTCCACTAGCTAAAGCATCTCAGCAATTTAAGGTAGGTCAAATTTTGGATGCAACGGTTTCTAATATAAAGGGAGTTAAAGTAACTTATCAATTACCAGATGGAATAAAAAAAACTACAGAAGAGCATAAAGCAGCAAAATTCTTGGAAGCAGGACAAAATGTCAAAGTCAAAATTACTGCTGTAAAAGATGATGGTAGTATCAAAAATGTAAAATATCATGAGTAACGCAATTAAAATAGATATTCCCCAACTCTTTCACATCCTCACCAACCACTATCCCTACAACTTCCAAACCCAAACTATCAACCGCATTCTTAATCTTGAAGATACCCTGCTTCGCGCTCCTACAGGTTTGGGGAAAACCGAAACCGCGATCGCACCCTTTCTATTTGCGATTTCTGATGTGGGGAA # Right flank : CAATGGGTTTTTGATTCTCTATCCATTTGGTTGAGTTGACGCTCGATCGCGTCGCTAGTGCTATATTAACTAACAGGTGCTAGACTTTCAAGCACCATGCGAAAAACTCTACTAAGTGTAGATAACGGGAGAATAAACGGCACTAAATGATATGCCTTCAAAAAAACCGCAAGTAAGTATAAGGCTGGAGCATGATGAGTATGAGCATCTGCACGAATGGGCGGAATCCGAATTTCGCACCCCATCCGCGTTAGCGGCAATAATCATCAAAAAAACACTTAGCGATCGCGGGTCATCAAATTTATCTACTAATGAACTTATCGACCAAATTAAAAAGTTTCTTGCTCTGTTGCTGGGTGAACGCGATCGCAATGGCATTAGCTACGTACTACTGGGTCAAACTCTCGGCATAGATCCCGAAAAACTTCACCAACTCTTTTTATTGGTTCAAGAATGCAGAGCAGAGAAAGAGAAAACAAAACAATGATTGATATAAAGTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACTCAGCGATTCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 8 2209004-2207369 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================================================================================================================= ================== 2209003 35 100.0 38 ................................... CTGCTTTCTTAACTCCTATGACCGCAAGGTCGCCACAT 2208930 35 100.0 37 ................................... CTGTTCTTTAGCAACAGCGGGAGCTACTGTTAAAAGA 2208858 35 100.0 35 ................................... AAACATCATCATTATAGGCTGTGATGGCGATAGTT 2208788 35 100.0 36 ................................... TTTAGCCGGCGTCTAATCCATCATCAGGTGGAAAAA 2208717 35 100.0 35 ................................... TAGAATTTAATACCCGATTCCGAATTGCCGTCATG 2208647 35 100.0 36 ................................... TTGACACAGAACAAATTGAAATTAAGCGGTTAAATT 2208576 35 100.0 38 ................................... TTCGGGAGTATTTAACTCCATAAATTCAATCAACTCCT 2208503 35 100.0 36 ................................... TCATCTTCTGAAACTTCACCATCTCCTTCAATAAGA 2208432 35 100.0 36 ................................... AATACTGAAACATTCCAAGGCCCAAGCGGGTGCTGG 2208361 35 100.0 35 ................................... TTTAACTACTGCGACAAAAACAACTTTTCCTTCAA 2208291 35 100.0 40 ................................... CTATATGTAGACTTTTGACCTCTACAAGCTTCTCCCATTG 2208216 35 100.0 37 ................................... TTTAATGGAGGATCTTTAACTGGAGGTATTTCAAAGT 2208144 35 100.0 35 ................................... TTTATATTGTTTTTTTCTTCTTGAGCCATCTCCAT 2208074 35 100.0 37 ................................... CCTAGCATAACTTCCTATAAAACCGTTAGCCTCTAAA 2208002 35 100.0 39 ................................... AGCGGAACTGCCTAGAATACTGCTCCCCCTGCTGAGGGG 2207928 35 100.0 35 ................................... AAAAATGATGATCGTTGAAAAACCATAAGAAAAAA 2207858 35 100.0 33 ................................... AATATTGATACTGTCACCGGATGTTTGATTACA 2207790 35 100.0 36 ................................... TTTCCAGGGGTTAACAGATCCCAGGTTGGACGACCG 2207719 35 100.0 36 ................................... TGTAACGCCAAGTTGCTTAGCATCAACAAAGCCTTG 2207648 35 100.0 38 ................................... TCCTGCTCAGCGATTTGAGCATCTGACCATCTCCCCAA 2207575 35 100.0 137 ................................... TCGGGATCGGCTAAAACAAAATCAGAAGAGTTGGACTTCAATACTGCTCGGTTAAGGAAATCAGGTAGATTGAAACTCTTGATATATCGTTATCTACGACGCTCGAAAAGGTCTTAACCGAGCAGTATTGAGTTGGA 2207403 35 77.1 0 ................A.T...GA...T.T...TA | ========== ====== ====== ====== =================================== ========================================================================================================================================= ================== 22 35 99.0 41 CTTTGGCTTTTTATAAGTCGAATCAAAATGGAAAC # Left flank : ATGGAGGAGTTCCGCGCTCAGGTTGTGGATTCGTTTGTCAGTTATATTGTGAATAAAAAAATATTAACTCCTGAAGATTTTACTCCTCCTGACGAGCGCGGAGGTGTATACTTACAAGCAAGTGCGTTGAAGAAGTATCTCAAGCATTGGGAAGAGAAATTACAGTCTGAAACGACGCATCCCAATACTGGGTATAAGGTGGCTTATCGTCGTTGTATTGAGTTACAGGTGCGGGAGTATGTTGCTTGTTTAACGGGTGAGGTTGAAGTTTATCGTCCCATGACTTGGAAACTGTAACCTAGTATACCATTTGTGGGATAGACACAACGGCTGAAACCCTTATTCTTTCGTTCTATCCCACAAATTACTATCCTGGTAAGGGTTTGAAGTGTTGATATGGCACACTTATTGCAACTAATTCTCAATTATTGGAAGCAAAATTTGCATCCCACAAAAAAGTGCTGTAGAATTACCTCAGGGCAAGGCTTTCGAGCGGTAGC # Right flank : GCTAATTTTTTAGCGGTAAGAAATTTATCCCAATACTACAGCGATCGCCAACTTTATCGGAGCATCCCACTCCGATTTTTTCATGACTAATCCCAAGTCATATAACTCATATACAAACTCATATAAAAATCGCTTTTACTCAGATACATACTCATATAGGCATCTGCGAAGATGGAATTAAGTCAAAAGGAAAAAGATAAAAGGTCAGTCACTGGAATGAAGAAATTTCTTCAAATCAAGCCAGAGACAAACCTAAAAAATAAAAATTCTTTCTTACTTTGACTTTACACTTTTACTTCACAGAACCCATGTCTACTATATACATCACAGATCCAAATGCCTCATTCAAACTTCAAAACAAGTACTTGAAGGTATTTCAACAAGAGAGACAACGTTTCTTAATCCGCATTAGCAATATTAGTCAATTCATCATCTTTGGTAATATCAAATTGCCAAAAGATATCGTGCAGATTATCCGGTTAAATCAAATTCCCGTCTTG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGGCTTTTTATAAGTCGAATCAAAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 9 2912563-2913337 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2912563 37 100.0 35 ..................................... AAAGAACAAGATATCAAGACTGTTGATAAAAAACT 2912635 37 100.0 37 ..................................... AAAGCAATTATGCAATCTCTGTAATATTATCTTTAAC 2912709 37 100.0 37 ..................................... CTTAATCAAAAAGATCAAGCGCCAACTTTACTAGACT 2912783 37 100.0 38 ..................................... TGCTACTGGGTGTGCGGTGTCCAATGAATTTTTCAACT 2912858 37 100.0 38 ..................................... ATAATAATATTTCCTCTGAGGTATCATCTACTCCAGCT 2912933 37 100.0 38 ..................................... TTGAATTTTCCCCTTTTACTTCTGTTAGCAAGAATTCT 2913008 37 100.0 37 ..................................... CCCTCCATCTACAGAAGCGTTTGATGATTTTATAGAA 2913082 37 100.0 36 ..................................... CGCTAGATGACCTTTAGGGCTGCTTAGTAGGTTCCG 2913155 37 100.0 36 ..................................... ACGCAAGTGCCTATATAAAGAAGTTAGAAACGTTGT 2913228 37 100.0 36 ..................................... TCATCACTGGCTAGCCAGGTAGTAGAAGGACTTAAG 2913301 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 100.0 37 CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Left flank : TCCGTCGTTGGCTCCTTGTATACTTCTGCGTCAAGGCCTGCTCGTTCTCTGGGACGGGCAAGATGCCCATCCCACAAGAAATATAATTTATTTTGTGTTCCTAATAAAGATTGAATTCCTAAATGCTTACATTGCTTGCGCATCCCACAAGAAATATAATTTATTTTGTGTTCCTAAGCCTGCCGAAGATTCAGTGCGGATCTTTATTTTAGACGTTGGGTTAGTAAGCAAGACGATTACTTAAGGTTCCAGTAACCTCGACACCAAGAGATAATAATATTATGATTTTAGAGAAGTCTTATAAATTTTTGGCAAGGCAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCGACAGAACCTAGACAAATCAATAGTTTTAGCAATTGAGGTATGAGCATAGAGCTTGTTCGTGAAAGCCAGAAATGGACTTTTAAAACACTCCCGCCAAAAATACTCGTGGAAATGGCTCTACAGTTAGCTTTGATAGGCTGCCCT # Right flank : CATGTTGTTGAAATCAAAAAAAGTAGAAAGACTTTCTTTCAAATAAATGAAACTTCATTCTTGAATGTTTTCTAATAATTGTGTTTCCATTGCCACTACTTTGGCTAGCTGTTGTTCTAAAGCTTGCTTGCGTTGGCGTATTCTTTGTAATCTTTCCCTCTTCGCTTCCTTACTAAAAAACTGGTCAAAGAAAAAGTCTTGTTCTCCTTTTGTTAATCGCCCTATGCAGGGGTCTTTATCAATTTCATCAAGTGCTTGAAAAATAGCAATCTGTTCTGATGTTGGCGTATTGTCGGGAGACTTCATATTATTATACTTAACCCTAAAGGCATTGTTTCAATTCCGCAAGCGGAAGTCATTAATATGAAACGCCGCTCAACAATTTGCTTCCCCAGATTTCGACTTGTTTCAATTCCGCAAGCGGAAGTCATTAATATGAAACTAAAATGGCGATTGCGCTCCCATGACAAAACCCACGTTTCAATTCCGCAAGCGGAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 10 2913851-2913670 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 2913850 37 100.0 35 ..................................... GTGGGTTTTGTCATGGGAGCGCAATCGCCATTTTA 2913778 37 100.0 35 ..................................... AAGTCGAAATCTGGGGAAGCAAATTGTTGAGCGGC 2913706 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 36 GTTTCATATTAATGACTTCCGCTTGCGGAATTGAAAC # Left flank : GATCGCAAAAGGAATAGACTTCTTGCAAAAGTCAAAAAAATGAATAATTAACCGCAGATGCACGCAGATGCACGCAGATAAAATTTTCTGATACAAGAAGTCTAATATTGAGTTAGGAAAAGCGTCTGCATTGGGATATCAAACAGAAAAACTTAAATTAAATATAGACGTTAAAAAACAGAAAAAGAATAAAAAAAATCAATTTGACAATTTTCATGAGAGCATTTATCTTTAGCTTATACAGTACCGCAGTCTGTTTTCAGCAAGCTCCGGTCACTTCTGTACCTTGAGATTGGAATATGCTCAAAATTTTGGCGGGGCAAAGCACGGGCAAAAACCCCCTACCTCCCGCCAAAAGTCTGTAACCCTTATCATGACAGGAATTTGTCTTGTAAAGTCAATTATTTGACAGTTTCTGCGATCTGCTGAAATGGAGTTTTTGACCTCCCCTGCCAAAAATGCTCGTAGAAACTAAGATGGTACAGGGTTTCAAATTTCGG # Right flank : AATGCCTTTAGGGTTAAGTATAATAATATGAAGTCTCCCGACAATACGCCAACATCAGAACAGATTGCTATTTTTCAAGCACTTGATGAAATTGATAAAGACCCCTGCATAGGGCGATTAACAAAAGGAGAACAAGACTTTTTCTTTGACCAGTTTTTTAGTAAGGAAGCGAAGAGGGAAAGATTACAAAGAATACGCCAACGCAAGCAAGCTTTAGAACAACAGCTAGCCAAAGTAGTGGCAATGGAAACACAATTATTAGAAAACATTCAAGAATGAAGTTTCATTTATTTGAAAGAAAGTCTTTCTACTTTTTTTGATTTCAACAACATGTTTCAATCCCGCGAACGGGTTTCATTTATTTGAAAGCTTAAGTCCTTCTACTACCTGGCTAGCCAGTGATGAGTTTCAATCCCGCGAACGGGTTTCATTTATTTGAAAGACAACGTTTCTAACTTCTTTATATAGGCACTTGCGTGTTTCAATCCCGCGAACGGGTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATATTAATGACTTCCGCTTGCGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.80,-4.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 11 2925940-2927525 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2925940 37 100.0 37 ..................................... AGCTACTTACCAAGAGTTATAGGATAATGCAACTATT 2926014 37 100.0 35 ..................................... GCTTGAAATCCTTTTTTAGCAATATTGATAAAATG 2926086 37 100.0 38 ..................................... TCGTATCATCTGGAGTGGTAGTTACAATTTCGGGGTCA 2926161 37 100.0 37 ..................................... TTTCTTCAGCTTTTGCGTATTGGGTGTCTACTGGAAA 2926235 37 100.0 36 ..................................... TGCCTATTACAGAAGCACCTTCAATTTGAATAGCAT 2926308 37 100.0 37 ..................................... GTATTCAGCATCAACATATGCCCCACACCATCCTTCA 2926382 37 100.0 36 ..................................... AAGCTAAAAACATTGAACAAGCTTTATCTTATATAA 2926455 37 100.0 32 ..................................... TTTTTCAAGAGTTTATTGAAGAATCTACAGAA 2926524 37 100.0 37 ..................................... GGTACTTCTGTTTGTTCCAAAATGAAGTCTACTTTTG 2926598 37 100.0 37 ..................................... ATTTCATATTTATCAAGAAACCAGAATCGGCACTAAA 2926672 37 100.0 39 ..................................... TGTGCTACTCCCGGTTTGTTCGCGACGATCGGAGGCTAT 2926748 37 100.0 37 ..................................... TCCATTGGACGAGGTGATGCAAGCAGTTGAGTTTTAC 2926822 37 100.0 34 ..................................... CAGCATTTTCAGTCTCAGCTAACTCAAAAACAAA 2926893 37 100.0 35 ..................................... AGCCCAATCTTCATTAAGAAAATCTGGTAATACAA 2926965 37 100.0 40 ..................................... TATTTCTAATACAATATAATATACTGGGAAACCTTGATTC 2927042 37 100.0 40 ..................................... ACAGAAAATCTCAGAAAAGTAACCATTCGTATCTATGCGA 2927119 37 100.0 38 ..................................... AACACGGTTTTTATCTGGCACCCGTTAACGTTCTCCAA 2927194 37 100.0 37 ..................................... GCAAGAGTTGAGGGACTTTTCGTAACACTTGCTTGGT 2927268 37 100.0 35 ..................................... ACTCAAAAAATCTCTACGCTATCGCAAAATATTGG 2927340 37 100.0 40 ..................................... ATTCATATGAAATTATAAATTTTTTCTCTGGGACTTCTTG 2927417 37 100.0 35 ..................................... GAGTCCAACTCACGGCTCCCATTAAAATGTGGTAC 2927489 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 22 37 100.0 37 CTTTCAAATTAATGAAACCCGCTTGCGGGATTGAAAC # Left flank : AGTACTTTGTTTTACCTCGTCATTTACGACTTGCCAGACAATAAAGCAGCAAATAAGCGGCGAACAAAACTACATAAACTACTTTCTGGCTATGGGACATGGACGCAGTACAGCGTGTTTGAATGTTTTTTAACCGCCGTGCAGTTTGCTAAACTAACAGTGCAAGTTGAGAACTTGATTAAACCAGCCGAAGATTCAGTACGGATCTATGTTTTAGACGCCGGATCGGTACGCAAGACCATCACCTATGGTTCTGAGCAACCTCGACAGCAAGACACAATAATATTATGATGTTAGGGTCTTACAGATTTTTGGCAGGGCAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCGTCAGAACCTTGACAAATCAATAGTTTCAGCGATTGAGGTATGAGCGATGAGTCTCTGAGCGAAAGCTAGAATAGACTTTTAAAACAGTCCCGCCAAAAATGGTCGTGGAAACGGCTCTACTGTTAGCTTTGGTTAGCCGCC # Right flank : CCAATGATTCCAGATAGCTTTTCAATTACGCCAATCTCTCCAAATCCCGAAATCTCGTCATATATCGAACCTCGCCAAAATACTATCAGTGATTGGTGAGTTTTGGCGAGATTGAGAAAGAACAACCATTATTCCTCAGCTGTGCTTACGCTATATCTACCCTAAAGTATAGGACTAGGTGCTATACTTTAAACAAAGAGACTATAAAATGAAAATTTACAAAAACCGTACTTTTGACCGTTGGGCGCGAAAGGAAGGCTTAAACAATCTTAGTCTCTGTAACGCTGTAAATGAAATGGCAGCAGGGCTTTATGATGCTGACCTTGGAGGTGGACTGTTTAAAAAACGCATAGCAAAACCTGGGAAAGGTAAGAGTGGTGGATTTCGGACACTAGTAGCTACGAATAATGAAGATCGTTGGTTTTTTATTTTTGGCTTTTCAAAAAACGAACGCAGTAACGTTGACAAAGATGAAGAAGAAGCTCTGAAAATGTTATCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATTAATGAAACCCGCTTGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 12 2929286-2930127 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2929286 37 100.0 37 ..................................... CTTTTCTCCCGTCAAGTCTAATCTACCCCCGACTAAG 2929360 37 100.0 33 ..................................... GAATAAGGGAGACTCATTAAAATTTAAACTTGA 2929430 37 100.0 35 ..................................... GATTGACTTTATGTCTCATGAAGAATTAATTTCTT 2929502 37 100.0 36 ..................................... ATTCCACCTACAACGTAAATAAGCAAAGTATATAAC 2929575 37 100.0 40 ..................................... ATTTCTTCTATAATTTCAACTGTCATGACAATACCTCTAA 2929652 37 100.0 37 ..................................... GAATTCCTCTAAGACAATAAGTGACCAAAAGACACAA 2929726 37 100.0 35 ..................................... TTGTCGCTTGGCTGTTTTCAACAAGTTTGATTCAT 2929798 37 100.0 37 ..................................... ACTATCCACAACGTTCTCAATTGGTTGCAACGGGTTG 2929872 37 100.0 37 ..................................... ATTCCGGCTGTGAGTTTCAAGCCTGGGAGTGGGTCAA 2929946 37 100.0 34 ..................................... AGTAAGGCTGATTGCTCTATCACCCTCCATCCCT 2930017 37 100.0 37 ..................................... CGATTCTTTGGTCAAGAAAATTAATTCTTTAGCGGAG 2930091 37 91.9 0 .......T.A...............T........... | ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 99.3 36 CTTTCAAATTAATGAAACCCGCTTGCGGGATTGAAAC # Left flank : TACTTTGTTTTACCTCGTCATTTACGACTTGCCGACAATAAAGCAGCAAATAAGCGGCGAACAAAACTACATAAACTACTTTCTGGCTATGGGACATGGACGCAGTACAGTGTGTTTGAATGTTTTTTGACTGCCGTACAGTTTGCTAAACTAACAGTGCAAGTTGAGAACTTGATTAAACCAGCCGAATATTCAGTGCGTATCTACGTTTTAGATGCAGGGTCAGTACGTAAGACAATTACCTATGGTTCTCAGCAACCTCGACAGCAAGACACAATAATATTATGATGTTAGGGTAATCTTACAGATTTTTGGCAGGGCAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAAACGTCAGAACCTTGACAAATCAATAGTTTCAGCGATTGAGGTATGAGCGCAGAGTCTGTTTGCGAAAGCTAGAATAGACTTTTAAAACAGTCCCGCCAAAAATAGTCGTGGAAACGGCTCTATAGTTAGCTTTGGTTAGCCGCC # Right flank : CCGGCACAAATGTATCTAAATTATGCAACAATCCTACTTTCAATTAAATGAAACCTAAGCGATCGCAATAAATATATAGAGTTAAGCCTTTCAGTTATCAATTCCTTCGACTAGCGCACACTGAAAGTCATTTAATAGTAAACTGACTCAAGTTGATTGAGAGCAAAGAGTATGCGGCGTGACCCCATTTTTTATCAGATGTTTCAGAGATCCCCTCAATTGCTTTTTGATTTGATTGGCGCTCGACCAGACAACGCCGAAGATTATCGGTTTGATTGTGTCGCGGTTAAGGAACCGAAGTTCGAGATTGATGGGGTATTTCTGCCACCTGATTCGGAACCGGGAACGGTTTATTTCTGTGAGGTTCAGTTTCAAAAGGATGAGGAACTATACGAACGGTTATTTGGTGAATCGTTGTTATATTTTTACCGCAATTGCAATCAGTTTTCCGATTGGCAAGCAGTGGTCATTTACCCATCACGCAGCATCGAACAGAGCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATTAATGAAACCCGCTTGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 13 2935372-2937828 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2935372 37 100.0 41 ..................................... AGATTACAACCTACGCTGATGCTCATGCCCGATATGTTGAA 2935450 37 100.0 38 ..................................... AGCTTTGGACGTATGCAGTAATATCTTTGTTTGGGTAG 2935525 37 100.0 38 ..................................... TTTTTCACAATCTTTCTGGGTTATTTTTGCCACTCTAT 2935600 37 100.0 37 ..................................... TTACACTATTTAGGGCAACTCTTTGAAAGCTAATAAA 2935674 37 100.0 36 ..................................... TAGTAAGGAAGGGTACTACTGGGAACAATATCCTGA 2935747 37 100.0 36 ..................................... TACCCTAGTATCTCTATTAACTCACGAGCATACCAA 2935820 37 100.0 40 ..................................... CTATCAATATTACTCCAGATACTACAGCGATAGTACAGAA 2935897 37 100.0 36 ..................................... GAGTCAAGCGCTGTTTTATTAGGAGGTTCTTCTCAA 2935970 37 100.0 37 ..................................... CCCCTTAGCATAAACCTCTGTATATCCAGCTGGATAA 2936044 37 100.0 38 ..................................... ATTTACATAGCAACCTATTTTGCTTGAGGTCATCATAG 2936119 37 100.0 38 ..................................... CGATATCCATCCACCAATACCCCTTTGGGGCTTCAAGC 2936194 37 100.0 33 ..................................... GAGGAGTTTGCAATTAAAGCTGGATATGTCTCA 2936264 37 100.0 33 ..................................... TTCAAGTTAAACCTGATATACCTGTTGTAGATG 2936334 37 100.0 35 ..................................... AAGTAAGAGTATAAGAAGCAGACATACCAGAAGTA 2936406 37 100.0 34 ..................................... CTCCGGAACAATTTCTCACGAAATTTGAAAGTGA 2936477 37 100.0 36 ..................................... ATTGATTTTATGCGGAACGACGTTTTGTTTTTCTAC 2936550 37 100.0 38 ..................................... GACAACCATTTATCTTTGTCATTTTTGAATTGTTGGAA 2936625 37 100.0 31 ..................................... CGGTCGGTTCCGTTGACTTGCTCAGCCACAA 2936693 37 100.0 36 ..................................... AGCTTTTGAGTCTCTCTAAATCGACGATCCACAAAC 2936766 37 100.0 39 ..................................... GAAAAATGAAAGCATACTTTGTTATGGGGGTATTTCATG 2936842 37 100.0 34 ..................................... AAGTACTGTGGGTCAAAACTGGCAACGCATTGCT 2936913 37 100.0 35 ..................................... ATCAATAGTTTAGCGTAATTCTCAAGAGTAAATTC 2936985 37 100.0 38 ..................................... ATTGTTGAGCCAACCGCAATGATTGTTGAGCCATTAAA 2937060 37 100.0 34 ..................................... AATTTATTACCAAGACAAAATTGGGTTTCGTTAG 2937131 37 100.0 35 ..................................... GTTAGATTTATATTTCATCGGTTTCGGGGATAGTG 2937203 37 100.0 39 ..................................... CGGTTCCTCAATCAATCACAGTTCGTGAAATGCGTGAAT 2937279 37 100.0 38 ..................................... ATAAATCCATCCGCAACACCTACATTTGAATAATTCTT 2937354 37 100.0 36 ..................................... ACTTCACCAGGAGATAAACTAAAGTTAGAGACAGCA 2937427 37 100.0 36 ..................................... GCACAATTCCTAAAACTCGCCCCCAAGGAAAAATTG 2937500 37 100.0 36 ..................................... CCGTCATCAATGTTGTTCTTTTGCTGCTGTTGATAG 2937573 37 100.0 38 ..................................... CTAAAGTTCGTTTAACTTGGTCTTTTGCATAGTCACGG 2937648 37 100.0 33 ..................................... GAGCCTCAAAAATTGTCCGCAGAGGGATTAAAT 2937718 37 100.0 37 ..................................... ATTCCTGGATACATTTGCTGAGCGATATCAAATGAGC 2937792 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ========================================= ================== 34 37 99.9 36 CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Left flank : ACCGTTCTTGATAACGAACTACACCCATGTGATACATGGTGAATCCTCATTTGACTCCTTCCATGTACTACACAGTTAAGCCCTCTCTGCTCCCCCAGGTATTACACGGAGAGGTTTTAGCCGATCCATAATCGTATTGAAACCTTACCCAGTCCGGTATTAATTCCTCTCTCCCTTCAAAAATGAGCGAACGTACAGGAATAACTGCTTCATCACACGGCTGTTTGACGATGTTAGCCATCTTATACTTAGTAACCTCGACAGCAAGACATAATAACCTTATGATATTCTTAGTGGTCTTCCAAATTTTTTGGCAGGGCAAAGCACGGGCGAAAAACCCCCACCTCCCGCCAAAACGTCAGAACCTAGACAAGTCAATAGTTTTAGCGATTGAGGTATAAGCACAAAGCCTGTTCGCGAAAGCCAGAATGGACTTTTAAAACAGTCCCGCCAAAAATGGTTGTGGAAACGGCTCTATTATTGGCTTTCGTTGGCTCCCC # Right flank : AAGAGCGATTTTTGGTGCGAATAATCACAACATTTTCGTTGAGAACCTACTTACTCTGCCTGCACCCGTTCAACACTCGCTCTAGTTGAGTGGGCTAACTCAACGACTCATGCTAGGATATACTACAAAATGAGGCAAGCACTCAATGAGAGCGATTGAAGTTACGGGAGGAATTGTGCTCAAATTAAGTAAATTGGGAGGCTAAAAAATGAATACTACTCAATTAATAATGAATGGAGATAAACAAACAGTTATCTTACCTAAAGATTATCAATTACAAGGTAATGAAGTTTACATTAAAAAAATAGGTAATGCTGTTGTACTGATTTCTAAAGAAAACCCGTGGCAAACATTATTTGATAGCTTAAATCTTTTCTCTGAAGATTTTATGGAAAATAGAGAACAGCCTTATTTAGAAGAAAGAGAAGTTCTGGAATGAGATTTTTGTTAGATACAAATACTTGCATCTATATTATTAAACGTAAACCAAAGAAAGTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 14 3336219-3337135 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 3336219 36 100.0 34 .................................... TGAGTGTTGGTGGCGCATCCGTGCAGGAAGCACC 3336289 36 100.0 32 .................................... GTTTCTTGGCCGTTGGCGAAGAAGCGGAGATC 3336357 36 100.0 37 .................................... TTGAAGACATCTTAAAAGATTTAACAAAATAATTTTT 3336430 36 100.0 38 .................................... TAAATGCACTTCTCGCAATATCTATACAAAGAATCAAT 3336504 36 100.0 39 .................................... CACTTTGGGTTAATAAAATTGTCGAAGGGAATAAGGTGA 3336579 36 100.0 37 .................................... TACTTTGTTCCAGTAGCTGGAAAAGAAGGGGAGTATG 3336652 36 100.0 38 .................................... CACTGATTCTTCTCTTGTTGATAAGCATGCTTAATCTC 3336726 36 100.0 40 .................................... GGTATCCCATGTGTGCTTGCTGATTCGATAAAAAGTAAAG 3336802 36 100.0 35 .................................... ACGTTCTTGTTGATGAGCGCGATACCAATCTAGAA 3336873 36 100.0 42 .................................... TTCACTGCAGTTTCCTGCGTTGATCGAGTCTGTATAAGAAAC 3336951 36 100.0 38 .................................... CTTTCCTTCCCTTGTTAACAGCCAGCATAATCCCTGAT 3337025 36 100.0 39 .................................... TTTAAATAGTGAAATAGTAGCCATGGAAAATTCCTCATT 3337100 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 100.0 38 CCCCACCGATTGGGTCAATTCGGATTAGTTGGAAAC # Left flank : GAGGAGATGCGGCAACTTTATGAAAAGGTGAAAAAATTAGTTAAACCTGTGGAGGATAATGTGCGGTTTTATTGGATACCCCAAGAAGCTGTTGAGAGGGTGTTAACTATTGGAGGTGAATCACCTCAACCACCGCCAAAGTATTATGTTATCTAGGTTTGAGGGTTCTTTGAGGGTTACTTTCAGATGTTCATCGACACCACTCGCTGAATCGCTGAAACCCTATATTTTTCGTTGAGTGGTGTCGATAGCTTACTGGGCAAGGGTTTGAGGTACGTGTTTTGCTAAATTTTTGGGAGGATATACTTTTAAATGTCTATCGACGCATCTCCCCAAATCGCCGAAACCCTATATTTTCCGTTGAGATGCGTCGATGCCTTACAGGGAAAGGGTTTGAGGTATGTGTTGCGAGCAATTTTTGGGAGAATGTACTATACTTTTTCTAGATGCGTCGATTTGGCTTCTGAAACCCTTACTGGGTAAGGTCTCCTAGACGAACT # Right flank : CAAGGCAATCTTAGCTCGATCGCCTGCTTTTACCTTCGTTCTCGTCATTTGTTACTTGCCTAATTTCTTCGGCTACTTTTAAAGAATTAGAAATTGATTGATCGAGATTTTTGAATGGTAATAATCACTGATAAATATCCAAATATCTCCTACTAATAAAAGTGGTTTTTGATACCAGCAAATTTTGAGTCGATCAACAATTTGATATAAAAGCCACCTTTGCACTTGGATATCAGGGGAGTATCCACTTTCGGAAGAAACATAATTCTTTGATACCAGAACCCGGACTATATGGTTTGTCTAAAAAAGTCCATCTGCCAAAAGTGGATGCTCCCGATATCAGAAACTCGATAAAGCTCAAAACAGGTATTTGCTTCCAGAATTGAGAACTCGGCGATTAGTTGTTGATTTTCCTGTAGGAGTTTTAACTTTGGGTTAGGGTTCAGCAAAATCTCCTATTTTGGTAAAAATTCTAATTTAGAAATTCTGAATTATTCATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTCAATTCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 15 5626445-5626910 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 5626445 36 100.0 37 .................................... ACTCAATATCAAAACAATTCAGCGCGGGGTACATCAC 5626518 36 100.0 35 .................................... CCATCCCAAGGTCTCATGTATTGGTAAGCTAACAT 5626589 36 100.0 36 .................................... AACCTCCTGATAGAAAAGTTAAAGCGAAATTTCATA 5626661 36 100.0 37 .................................... TCCCCAAAATCTGCTGGGTTCCATCGGTCATCGCTAA 5626734 36 100.0 34 .................................... ATTCCTACATCTATTTTTTGAGCGATTCGAGCTT 5626804 36 100.0 35 .................................... GATTATCTGATACTTGTTTCGCAATTGCTCTTTGA 5626875 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 100.0 36 GTGCTCAACGCCTATCGGCTATCAGAGGAAAAACAC # Left flank : TCTTCCTCTTAAGCGGATAACTCGTATTGCTGAGGAAGTGAGTACAGGGCATTTAGATATCGACTTCGATGGAGTTTCTAACGATGAAATTGGTAATCTTGTCAATGCTTTCAGACGAATGAAATTAAGTTTAGAAATGGCAATGAGAAGAATCAAGCGTACAAATGGTGTTATGTAACAAATTATTTTCTGCTCTGCGCTCAGAAAAGTCTAGGTAGGTTGGGTTGAGGAACGAAACCCAACATTTCATCAAATTCTTATGTGTCAACATTCTACCCAACCAAAACAATACATTTGGTGATTTAAAATTTAATTTGTAAAAAACCTCTCAACCCCTATTGGCTATCTAAGATATAGCAATTCTCGCTTGGGTACAATACACAGAAAAGTTATGGAACCGCAGATGAACGCGGATGCACGCAGATGAAGACATTATTTAGGTGAAAATTGCTGCTGTAAAGTATCTTTACGAGCGTACACTCGATAAATGAAATGCTGTA # Right flank : CAGCGAGCTTGGGAATATTGACTCCGAGTGCTTCTCTCTTAAATTTTACAAGCACCTCTAACATAGACACAATAACTTAGCGAAAAAACGGCTGAAACAGCATTTTTGAACGAGTCGAGTAATTGCTATAATCTTTATATTATGAGCAATATAGCCATTTTGCAAGCACCTTCCAGTAACTTTTTTCAATTTAAACCCTTATCAGGTAAGACTTACATCTACTTTTATTTGCAAATCGGGTTTCACAAAAAGAGATGCTTGCAGTTTTCAGTAACAAAGAAAATTAAATAGACCTCTCAGTTTCTAAGTTATTATAGTTTTGGGTATTAAAGACTTTGATGCCGTTGAACACCGAGTAATCATCAGGCGTTGAGCACTTTCGTGTTTGCCAGGTGTAGAACCTCTAAGCGATACAGGGCGGATGGGCTTAACATTACCCTTCTCGCTCCTAACCTAAGATGCCGTTAGGCGATAAACAGACTTTAAATAGTACTTGACAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTATCGGCTATCAGAGGAAAAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 16 5636238-5637778 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 5636238 36 100.0 35 .................................... TAGCAGAACCAGGACGATTTGATGGACTACTACCA 5636309 36 100.0 34 .................................... AAGAGGGATTTCCCGTATACTGATTGGCGCTGAT 5636379 36 100.0 35 .................................... GATATTAACTTGTCCGGTAAATTTCCAGACTGATA 5636450 36 100.0 37 .................................... AGACTAAGCTAGTAATTTTTATTTGCAATAATTAAGG 5636523 36 100.0 35 .................................... TTCACCATTTGTCAAAATAGCCGCTTGTCCGTTTC 5636594 36 100.0 35 .................................... ATTTTTACTACTTTAAAACTTCTGATGCCTACAAA 5636665 36 100.0 36 .................................... TCTCTGATCCACTTCTCAGGATCGTTACTCCAAAAG 5636737 36 100.0 35 .................................... AAAAGTAGTACATTTCCTCAAAATGGCATTTTAGC 5636808 36 100.0 35 .................................... CTTTATCAACTTTCTTCTTCGACTTGAACATATCC 5636879 36 100.0 38 .................................... ATTTGCGCCCACAACCATCGGAGCTACAATGCGGCTCT 5636953 36 100.0 35 .................................... AGTAACCAGTAAGTAGCAAACAAGTAACAGGTTTT 5637024 36 100.0 36 .................................... CCAATAGGCGTTGAGCACTTTCGAGCTTGACAGGTA 5637096 36 100.0 37 .................................... GTAGCGGTAACTTATCATCGATTCGAGGTAGCTTAAA 5637169 36 100.0 36 .................................... TCATTACCAACACTTCGGATAAGTGGTGGCAACATA 5637241 36 100.0 36 .................................... GAGGTCTTCTGGAAACCAATAATCACTGCGCTTCCG 5637313 36 100.0 37 .................................... GAATTATTAGAGCAACTAAGAGAATATTTGTAATAAC 5637386 36 97.2 36 .....................C.............. CTTAGCTTGATTAATGTCAGGTATCGAGAAATCGAA 5637458 36 94.4 35 ..A..................C.............. TCTTTTATGTTTCTCTCATCTCGTGTGCTGAGTTT 5637529 36 94.4 37 ..A..................C.............. GATAGAGAAGGAGCGCAAAAAGCTAAAAAGACACCAC 5637602 36 97.2 34 ......................G............. TTTGAGCTTAAGCTGCTGGTTTTGAGTGTTAAAG 5637672 36 97.2 35 ......................G............. CAAATGGGAAAATTGAAAACGAGCTAGCCACAGAA 5637743 36 91.7 0 ............C......T.C.............. | ========== ====== ====== ====== ==================================== ====================================== ================== 22 36 98.7 36 CTGATTAAACCTTAGATACCGTAAGGTGTTGAGCAC # Left flank : TGGCGCAAAGCTTACAAATTGTTGGAGGGCTATGGAGAACGGATACAATACTCAATTTTTCGCTCCGTCATGAATCAACGCGATCGTGAAAAACTACGTTGGGAGTTGGAGACGATTTTGGCAAAGGAAGACAGTATTTTGTTTGTGCGTTTGAGCGATCGCTGCGTGCAAGATATACCCAAGTATAATCGACCAGGTACATGGGAAAATACAGATAAGCCTTTTTTGATTGTTTGAAAAATACAAGCATCTGTGTTTGTTAGGATAATCAAAGTAAACGTTTTCGCTGAAACCCTGACCAATATAATGTTTGAGAGATTTTTGAGGTTCTGTAGGTGCTTGTAAAATTTTCAAACCGGCTTCTATCATGGGTTTTAGCTGGTGAAGCCAGGTTGGATTTAAGGAAGAATTGCGAAATTTCAGTTTTTTCTTGGTTTTTTAGCAAGGTGCTTGTAAACTTGAGTTGGAGCGCCTGCTGGTTGAGCCTTTCAGCCTTCGCT # Right flank : CAAGTTGTTCCAGAAGGATATTAGATAATGGAAGTTCTGATTAAACCTTAAATACCCCCACTATCTAGGAAAGCACAAAAAATTGAGATCGAGTCATTTACATATGACTATAATGATGACTATAATAATAGTCAATAATACCAAAGCCTAATTTCACTCTAATCTTTGCTCCTGAAATCATCGCTCACCTTAGAGCGATCGATAAAAAGTATCACAATTTGATTCGAGAAACGATTGCCGAACAATTATCTTACACACCTCTTGAAATCACTCGAAACCGCAAGCCAATGGAACAACCAGCCCCATTTAGTGCAACCTGGGAACTTCGTTTTGGCTCTCAAAATTGCTTTCGCGTGTTTTATGAGGTGAATACAGTAGAGCAAACGGTTCTGATTTTAGCCATTGGTGTCAAAGATAGAGAAATATTACTCATTGGCGGAGAGGAAGTTGAGTTATGAAAATTGCACCAATTGCAGATGTAAAAGCACAACTCAGTGCGT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGATTAAACCTTAGATACCGTAAGGTGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 17 5759784-5759961 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 5759784 36 100.0 35 .................................... CATAGATACTAGGCGTCTGTCAAAAAATTACTTAC 5759855 36 100.0 35 .................................... TTGTCTTACCTTGGCTCTTTGCAGCGATATATCGA 5759926 36 77.8 0 ...............C...........AAAA..CTG | ========== ====== ====== ====== ==================================== =================================== ================== 3 36 92.6 36 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : ATTTTTTTTAATAAAGTATTATTTTTTGAAAACTGAGTTTTCAAAATTCAATGTAACCACGTTATGCTTATCCTTGTGATAGGTTTTTTAACGTAAAAAAGTATTACAAGTGCTTTTATATTTAAATCTGATTGGAGATAATTTTGTAAGCAAAGAGAGTAAATCCGAACTATAAAAACCTCATGATAAGCAAAATAAATAGATATATTTCCGGATGTTTGTATTACATTTTGAAATTGTTGATATACAAACTAAATTTACTATAGTAAAATAAAAAAATATGGATTTTATTGACCAAATTAAGCAGCTTTCTCAAAAGGTTCAGAGGCAGAAAAATCTTATAAAAACTGAAGAAGCTACGAAAAATGCTTTTATATTGCCTTTAATTCAAGCTTTAGGATACAGTTTTGTGCGATTTCTGGGAGGATGTACTATAATTCCATCAGTGGTGTCGATTTGGCGGCTGAACCCCTTGCTGGGTATGGTCTCCTAAACGAACT # Right flank : GCACGAATTTGTACAGTCTTTTTCCCTTGGGAAATGCGTAGTAAGTACTGACTTTACTAGAAATAATGAACTATACCAATAATAGACTAGAGAGAAAAGTACGTTTTTTTAAATGACTGATGGTAAGGTTGCTTAGGGCATCATTGGGAGGTGTTTAAACGAGTTAATATCTCATCATAAGTTAAGTCTCGAATTTCATTTAAATCATCCGAGTTCAGCATTTTCATGATTCTTGTAATTTCCATGGAAACTAATAAATCATTAATTTGATATCCTTTTAAAAACGGAAAATATCTCACAAAAAGTTGAATTAATTTATTCATTTTATCTTCCCCATTCAATCCAGTTTTGACACAGTTTATAAGCTGGAATTAAATCGCCATAATGATTGTTCTCTAAAATTAACTCTCCATAGTCCCATGCTTGCTTTTCGCTAGCTTCATTATTTGATTCATGACATGCTTTCCATTCTAAATAGGTTTGGTTTGATGTTATAAATT # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 18 5800923-5802057 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5800923 37 100.0 37 ..................................... TTGTTCCTATGGATCTAGAGTCAAACACGACTTACGC 5800997 37 100.0 34 ..................................... GTAAAAATTGAGTCTCTTGAAAGCCATCAAGCGC 5801068 37 100.0 39 ..................................... AGTGCGGGTGTAAAGATCGTGACGTGCAGAGGCGAGCGA 5801144 37 100.0 37 ..................................... TTCCACGGTGAAAATTTTTCGCTTACAACCCGCACCA 5801218 37 100.0 36 ..................................... CAAATGGCACCGAGTCAAGCGCATGGGGAGATTTGT 5801291 37 100.0 36 ..................................... GCTAATAACTGTGCTAGAGCAAAAAATAAGTAACAT 5801364 37 100.0 37 ..................................... CGAAATGAGCTTGGTAGATTTTTTAGCAAAATGGGAC 5801438 37 100.0 35 ..................................... AGGCAATTGCCCTCAGCTGCACAAATTGCCCAAGG 5801510 37 100.0 35 ..................................... ATTCATTTGGATCGCAATCCCCTCAACTTCAAAAA 5801582 37 100.0 31 ..................................... AAGTCGGTTTCTTCCGCCGCCTTGCGTGGGA 5801650 37 100.0 35 ..................................... CGGAGGATGCGAGTTATCGCCTGATGCGATCGCAC 5801722 37 97.3 38 ...........T......................... CCGATCCTTTGGAGTGGGCAGAAGATCTGAGAGTGCGA 5801797 37 89.2 38 ....T.....GT...........A............. AATTAACTCCTCCTAATGCGTATCTTCTGGCGTTTTTG 5801872 37 91.9 37 ..............T............AA........ GAGTGCCACTGTTGGTGGAATCCTGGTTGCGGCTGGA 5801946 37 89.2 38 ....T.....GT...........A............. ATTGATGATGTACCGGGGTAGACCAATCCCTCCGGAAT 5802021 37 81.1 0 ................GTA...AA.A...A....... | ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 96.8 36 GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Left flank : GTCTCTGTACTGTGGAAAATCTGGGTTAGTTTGACGGTTGGAAAACCGTTTTGCTTTCTGACCCTGGTAGCTGCCCGCTTCTCATGCTCTGACTTTTCACGTTATGTGGAAAAAGTAACGTAATTTCGTTAGTTAAGACTTACCGTAAAAAGTCAGTTCTGATGCTGCTGTCGCAAGACAGGATAGGTGCGCTCCCAGCAAAAGGAGTATGTCTTGAAAAAGACTAGCCGTTCTAGTAACGGTGCGGATTACCGCAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCCAAATATTTTTTTGGCAAAGCCAAGCGGGGGCAAAAACCCTGAGGTCCTGCCAAAACACGGAAGCCCTTGTTATATCTTGATTTCAAAATCTAGGTTGTTAATTAATTTAGTTTTTTGGTTTTAAGATAGAGCTACTTTTACGCAGCCTTGCCAAATATGCTTGTGTAACGCTCTAAATAATAAGGGTTTTAGACGGGTAGA # Right flank : GATTTGGTGCAAAATAGGGTCAAGTTATTTTTCAAAAATTTCAACAATTATCTGGCTATAGAATCAGTTCAGTAGAAGATAGTAACAAAAAATTCACTTGTGTGAAGGCTAAAGAGAGGAGAACACGATATCAGGAGTGCGATTGAAATGCGTCCGTTAGTCACTGAATTCTCCTGCCGAACTATCAACTAAAGAGCAAAAAGTTGCATATAGCAATCCTACCTGATTTGTGAAAAAATCTCAGTACTGTAGGGTGGGCTATGCCGCACACATGATATTACTGGTGGACAATGCCCACTCTACCTGTATTTCAAAAATCAAATAGGAGTCCTATATACACTATATACACTTACGCAAAGCTAAACTATTCGTATTTTTGAAGCAGATACGTCAGGAATTATTTGACTGTGAATTTCAAACAGAACTAGCAACAGTTTTCAAGGATAGTAGCGTCAGGTTGTGTCCAATACCACTTTGGCTTAGGAAAGAGTAATCACACA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 19 6391803-6392347 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 6391803 36 100.0 40 .................................... AAAAGGCTTTCGCCCTCATCATGGAAAATAGATGAGGGTG 6391879 36 100.0 36 .................................... TCTTCAATGAAATTCCGAGCCGCATCACCAGAACCA 6391951 36 100.0 37 .................................... CATGGAAGCTGCGGCACCGGCGCCGATCACACCAACA 6392024 36 100.0 40 .................................... ATTGCTATATCTCCTTCTAGCAAAGCTACTTTTATTACTG 6392100 36 100.0 35 .................................... TTCGAGAACTGCGTTTGGGACTAAGTCGCCAACTC 6392171 36 100.0 35 .................................... TCTGGATACCGCACCCATTACAAAATCTGCAATGG 6392242 36 100.0 34 .................................... ACCAGCAGCAAAAACGGAAGCAACAACTGTTGAG 6392312 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 8 36 100.0 37 CCCCACCGATTGGGTCAATTCGGATTAGTTGGAAAC # Left flank : GTGTAAATGCTAGTGCTTGTAGTGTATGATATTCCTAATGATAAAAGACGCACAAAATTGTCCAATTTCCTAGAAGGATATGGGCGAAGAGTTCAATTTTCTGTCTTTGAATGTTTTTTAAGTTTGGAGGAAATGCGAGAACTTTATGAAAAAGTGAAAAAGTTAGTTAAGCCTGTGGAGGATAATGTCCGGTTTTATTGGATATCTCAGGAAGCGGTTTCGAGGGTATTGACTATTGGTGGGGAAACACCCCAACCACCGCCAAAGTATTATGTTATCTAAGTTTGAGGGTTCTTTGAGGGTTACTTTCAGATGTTCATCGACACCACTCGCTGAATCGCTGAAACCCTATATTTTCCGTTGAGTGGTGTCGATAGCTTACTAGGCAAGGGTTTGAGGTATGTGTTTTGCTAAATTTTTGGGAGGATATACTATAATTCTATCAGTGGTGTCGATTTGGCGGCTGAAACCCTTACTGGGTAAGGTCTCCTAGACGAACT # Right flank : CGAGCTCCTTGAATGAAAACGAATCCGCTTTGTTACTTGACCCATAAATCTGCACAGACTGTCAGGATAAATTTGCACTGTGCTGTACTTTAAAGAATAAGATGGCCGTTTTTAAAGGATAAAATGGCCGAGCCAGGGGGCTAGAATGCTTAATTTTCCGTAGAAGCACTCTGTATGCGATCGCAATCAATTCTCTCGAATACGCTTCCACCTTAGATTTTGGGCTGCGGCCACTTTATGCTTTAATTTCGGCCACTTTATCCTTTAAGTAACACAATTTTTAGTTATAAGTTAAAAAATTTTGCCAATTTATGCTTCAAGTAACAAATTGCACTACCGTCTCCACTAACAATGTGGAGGCGCATAATTGGAAACATAGTTAACAAAGCTTTTTATGATATAGAGTTGGTCTCCACTAACAATGTGGAGGCGCATAATTGGAAACTCAAGTTACCTGCTTGCACCATGTTTTTGCTCTCCCGTCTCCACTAACAATGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTCAATTCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 20 6392685-6393079 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 6392685 37 100.0 33 ..................................... ATAGTTAACAAAGCTTTTTATGATATAGAGTTG 6392755 37 100.0 36 ..................................... TCAAGTTACCTGCTTGCACCATGTTTTTGCTCTCCC 6392828 37 100.0 36 ..................................... TGAACAACATAAATTGAGTGACGCTATTTTACTAAT 6392901 37 100.0 35 ..................................... GATGCTTCAATTGCATTTTCACGAGCCCAAAAAGA 6392973 37 100.0 33 ..................................... ATCGCCACTCATTCGATGAGCAGCATCACGCAA 6393043 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 100.0 35 GTCTCCACTAACAATGTGGAGGCGCATAATTGGAAAC # Left flank : TCAATTCGGATTAGTTGGAAACTCTGGATACCGCACCCATTACAAAATCTGCAATGGCCCCACCGATTGGGTCAATTCGGATTAGTTGGAAACACCAGCAGCAAAAACGGAAGCAACAACTGTTGAGCCCCACCGATTGGGTCAATTCGGATTAGTTGGAAACGAGCTCCTTGAATGAAAACGAATCCGCTTTGTTACTTGACCCATAAATCTGCACAGACTGTCAGGATAAATTTGCACTGTGCTGTACTTTAAAGAATAAGATGGCCGTTTTTAAAGGATAAAATGGCCGAGCCAGGGGGCTAGAATGCTTAATTTTCCGTAGAAGCACTCTGTATGCGATCGCAATCAATTCTCTCGAATACGCTTCCACCTTAGATTTTGGGCTGCGGCCACTTTATGCTTTAATTTCGGCCACTTTATCCTTTAAGTAACACAATTTTTAGTTATAAGTTAAAAAATTTTGCCAATTTATGCTTCAAGTAACAAATTGCACTACC # Right flank : CTGAGACTTGCTTGCGCGATTTTCTCAAAGTCATCAGATAAAATATTAGGCAGCATAATTGAGTCGTTGCTCTAGTTCCTGATGCAAAGCCAGGTAATGACGGTAATCATTTGCCCATTCTATAAATAGAGCATCATCTGACAATAATCCTTGATTATATTGGTTAAAGAATTCTTCAGAGTTCATTTTTTGTTGGTTCTCATACAAGCTCAATCGCTTGGCAACGGCAACTAAGGCATCTAATGGTGATGTATACTGAATAGTCTGTTTACGCATTGGCTCTTGACCCTTGTAATAGATTTATCTCTAAAACTTCTAACTGCTTTAATCTTAGTGTAACTAGAGCGCCGGTACAGAAATCACAAAAACCCGGTAACTTCATCGTTGAGCATACGAGATATCAAGCTTTCCAACAGAGAGAAACCGGGTTTTTTGCCTTCTTTTTGAATACTGTACCGATGCTCTAGTACTTCGCCACACTAAGTTTGCTAGGTAAAACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACAATGTGGAGGCGCATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 21 6416366-6417138 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 6416366 37 100.0 36 ..................................... GAAAGTACCAACAAGAGACCACTTTTAACCGTTCTA 6416439 37 97.3 39 A.................................... GCCAGTAAAGCCTGATATGACAATGGACAAAACAATGAT 6416515 37 100.0 34 ..................................... TGTAAGGAATATATAAGATTACCAGATAGCCTAA 6416586 37 100.0 35 ..................................... GATAGCGCTTTCGGTGGGACAGTCGGTTTAATCAG 6416658 37 100.0 40 ..................................... ACTTCTCAGCTTATATCCACTTATAGATACAAACTCTTAT 6416735 37 100.0 34 ..................................... AATTCGTCCAGGTGGAAAGTCAAGTTCCATCCTT 6416806 37 97.3 39 G.................................... GGCCTTCTTTGCACGGAGAAGTTTTAGACGGCAAAGATA 6416882 37 97.3 38 A.................................... GCAGTTGATGTAGATATTACCGGAGCTTTAAAAACAAA 6416957 37 100.0 39 ..................................... ACAACTCGTTGATTTATCTGGCGGCATTCTGATGATGAA 6417033 37 100.0 32 ..................................... CATCGTTATCCTGAGCTTTGCTCTCAGCTTGA 6417102 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 99.3 37 TGTTTCCAACTAATCCGAATTGACCCAATCGGTGGGG # Left flank : TATTGCCAGAGCCGAACTCTTACAGCAAGCGATCGCTACTCTACAACTACAAATTCAACAAATTCAAGCTTCAGGAGAAGTTGCACCCGAAGGTTGTTGTGTCCTGCGCTACCAGGCACGCGGTCAAAAAGGAACTTACTGGTACTATAAGTTGCACGCTCAAATGCCGATTTTCCCTACGCAAACTCCTAATAAATTAAGTAAATATAAGCATTTGGGGAAAGCTGGAAGCCCCGCTCATATTGATGCTGTTATGCAAGTTACACGAAGAATGCAAATCGACACCTTAAAAAATACGATTCATTCTCTCAGACAAAACTGGATAGATTTGTACGAAAGTCTCAAAGACAAAAAATAACCTTGCCCATCCGCTTTCAGTTATCGTTTTTAATACGCGAACACATTTGACACTGTTTTACCCTTTATTTCCCTTAACCGAGCAGTATTGCAATCGGTGGGGCTTTATTGTTTGAAGACAGAATCCAGGCTAATCTCTGGAT # Right flank : GAGTTCGTCCAGGAGACCTTACCCAGTAAGGGTTTCAGACGCCAAATCGACGCATCTAGAAAAAGTATAGTACATTTTCCCAAAAATTGCTCGCAACACATACCTCAAACCCTCTCCCTGTAAGGCATCGACGCATCTCAACGGAAAATATAGGGTTTCAGCGATTTGGCGAGATGCGTCGATAGGCATTTAAAAGTTCTCCTAGAAATGGCTCAAAGCTATATGCAGAGACACTTTTACTATATATCTTTATTATGTTCTTCTCTCCACAAGCGTAATGCTTCTTGATAATTAGTGCTAGCTTGATGAATTCGCTGGTCGCATTGCTCTTGCAAACGATTATATCTATCAGCAATAATTTGAATATCTTTGTGACATTTCTTTTCTTTCGTGCAGAGTTCTTGCTCCCGCCATTGTTGAATTCTTTCCTTCACTAAATGTTCTGGTCCTATTATCGGTACATCTGATTCCGGTGGCTCTACAGTTTGAATTTGTTGTAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTCCAACTAATCCGAATTGACCCAATCGGTGGGG # Alternate repeat : AGTTTCCAACTAATCCGAATTGACCCAATCGGTGGGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 22 7625852-7627199 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 7625852 37 100.0 36 ..................................... AAAATTCTGCACCATACTACGCGCTATAAAGCTTAC 7625925 37 100.0 35 ..................................... CTATAAGCTCTTTTGATATCATGTATCTGCGACAA 7625997 37 100.0 34 ..................................... ACTGAACCAGTAGAATCTTGAGTTATTTCTATAA 7626068 37 100.0 36 ..................................... GTCTTGCCCAAAGTTTTTGGTAAGCCATAGATAGAA 7626141 37 100.0 35 ..................................... TCCAAGAGTACTTGGCGATATTACGAGTATGTAGG 7626213 37 100.0 37 ..................................... ATAAACTTATCAATTATTGGGTTCTTAAAAGCATCAG 7626287 37 100.0 33 ..................................... AGGCAGATTACGAAAATCAAATTAATCAACAAC 7626357 37 100.0 36 ..................................... AGAATTGCTATTACAGCTAACACCAGTTTTTGCATT 7626430 37 100.0 39 ..................................... TGGACTAAATCTATCTATTAAAGATAATATTACAGAGAT 7626506 37 100.0 33 ..................................... AAAAAAGGAGATAAAGAAATAAAACAATTTGCT 7626576 37 100.0 38 ..................................... GATGAAAAACCTACAAATTGAATAATTTTCCCACTATC 7626651 37 100.0 35 ..................................... AGCGCGTGGTAGATACCTATGACTGAAGAAACTGT 7626723 37 100.0 35 ..................................... TTATGAAGGATTTCGCATTGATTTTATCCAAATAG 7626795 37 100.0 35 ..................................... ATCTTTATATTCAATTTCTGTAAATAAACAAGCTT 7626867 37 100.0 39 ..................................... TTAATATTGTGCCATTTTGGGTGCGATCGCATATACTGT 7626943 37 100.0 34 ..................................... TTGTTATGCGCTAGCAACAAAAACGCGATCGCTG 7627014 37 100.0 38 ..................................... TCTTACTCCATCCCTATATTGGCGAGAACACCCAATTC 7627089 37 100.0 37 ..................................... GTATCTTCTTTGACCGCACTCTAGAACCGGGTGCTTT 7627163 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 100.0 36 ATTACAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTGTCTTATGACATTTCAGAAGATAAGCGCCGTACAAAAATCCATAGCGTGCTAAAATCCTACGGGCAGTGGGTACAATACAGCGTATTTGAGTGCCAACTCACTGACACCCAGTATGCGAAATTGCGATCGCGCTTGAATAAACTGATAAAGCCCGACACCGACAGCATCCGCTTTTACTTTCTATGCGCCTGCTGTTTTGGCAAAGTGGAGCGTATCGGTGGAGAGCCAGTACGCGACGACACAATTTTTTTCGCCTAATTCGCGGATGGGTAGGTGTAAAAAAAGAACCTACTAGAAAAAAGGCTAACTTCCTTTTGGGATAAGGGTTTACGGCAATTCGAGCGCCTTACCCATCCGCGCACCTTACCCAGACTAGATTTCAGCCATTTTCCCTCTACTCAATTTTAATTTCTCATGCTATGATTTATCCATCCGCGATTTTGAACCATGAAAACCAAATACCGATTGACTTTTGGGCTTTTGCC # Right flank : CACAACAGTAAGAGAACAAGGACTAACTTCAGCACCAGATGAAGAATTAATTGATATCTGCCGTGATGAAGGTAGGATACTAGTTACCTCCGACAGAGGATTTGGAAATCGCCTGAAATATAATCCTTCAAACTATGCAGGAATCGTGGTCATTCGGTTATCTCCCCGTTCTAATTTTAATGATTGACGTGAAGCAATAGAAACACTAATTACTGGATTGAAAGCTACAGATGTGACAGGAAAACTATGGATTATCAGAAATGGAAATATTCAAGAGTACCTAACAATTGAACCAGAGGGCAAAGAGCGATGACTCAATTTGATGATGCTCTTCCCCAAAAATTTCCAGATTTTGATGCTGAACCATCAAGCCAAATTTTTCATCAAGGGATAAGGTTGAATCAATACATTTGCAGGAATACCCAATTGTTGATGCAAATGTCGAATCATCTCTAAAGTCAAAGCCTGTTGGCGATTTAGGATTTCAGTAACCTGTTTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 23 7628616-7629745 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 7628616 37 100.0 33 ..................................... ATTTTTGGCTCAACCTTTGCTCTCCAAATATTT 7628686 37 100.0 38 ..................................... TTAATGAGTTATCGACGAAAGACCTAACGGAATCAGAA 7628761 37 100.0 35 ..................................... GAGTATTTAGGGTGGTGAGTGTAATGCAGGATTAG 7628833 37 100.0 34 ..................................... ATTCGTATGATTATTGCTCAATGGCAAGCGTTTA 7628904 37 100.0 40 ..................................... TTTTTAAATTGGACATCCCCACCACGAATAGGCATTATCT 7628981 37 100.0 34 ..................................... AGGTATGACATGGTTTTTTTCAGAAAAAGACTTG 7629052 37 100.0 41 ..................................... AGTTAATGAAGCAAAGCAAATACTAGCGCGACAGATAGCAG 7629130 37 100.0 37 ..................................... ACTTCGTAAAGGAAGATTTGATGAAATTTTCTATGTA 7629204 37 100.0 37 ..................................... GATAAAAAGACAGGCTACCCAGTGCTAAACTCTTACG 7629278 37 100.0 35 ..................................... TGTAAAAGAAAGTTTAATAATGATAATATTTTTAG 7629350 37 100.0 36 ..................................... TACTTTTGCCCACAATCTGTCGTTAGCCCCATTTTG 7629423 37 100.0 32 ..................................... GGATATTGTTTCCATGTGAATACTACCTGTTG 7629492 37 100.0 37 ..................................... GGATATTCTGATGATCAACCAATCATTCTCTAGATAA 7629566 37 100.0 35 ..................................... TAATTGATGCCCTGTTAACTCTTCCCACTTTGCCT 7629638 37 100.0 34 ..................................... CGATTACACTCTATCCGCAAAGGAAAGAAACAAA 7629709 37 89.2 0 ..................ATT..G............. | ========== ====== ====== ====== ===================================== ========================================= ================== 16 37 99.3 36 ATTGCAATTTCTTTGACTCCCTAATAGGGATTGAAAC # Left flank : GGTAAATACTTTTGATATCCGTCGGATAACTCCACTTAGCACGGGATGCTTCATCATACCAAGCCTTTAGTGCTTGCTCGGCATCAGGATGTTTTTCCCAAAACGAACGTAACGTGCTACGGGCAATAATTCGCATACCGGAATTATGTACTGCTCCCACTATAAACGATAATGTAGTGCATAAGCTAAACTCGTGCGATTCGTTGTTACTTCGGTAAAGTCGAAGGTATCGGTGGTGAACCGCCTCGCGACAACAAAATTTTCATTGCTTAATTCGCGGATGGGTAGGTGTTGGAAAACAACTTAGCTCAAAAATGGCTGAAATCTTTATGATGCAAAGCTTGCAGGTTATTGGACAACTCGAACCATCCGCGCACCTCACCCAGACAGGATTTCAGCCATTTCTCCTCTACTCAATTTCAATTTCTCATGCTATGATTGACACATCCGCGATTTTGAACCATGAAAACCGAATACTCATTGGCTTTCAGGCTTCTGCC # Right flank : CTCACATCCATCCCAATACTGCTCGGTTAAGAGAACACGAGAACCCCGGTATCTTTAAGATACCGGGGTTCTGGCACCTCAACTATCCTTAACCGACAAGTATTGACATCCATCCTTATCTCAATCTTGTTATTTCAGCACGTGAAATGGAAAGATTGCAAAAATTTCCAGATACATTTCTTTTTGCAGGTTCCAAGAAAAAAGCAATGTGGCAAATTGGAAATGCAGTACCACCTCGTTTAGCAGAGTGTATTGGGTACGCACTAATTCCCTCTTTAAATGAGATACAACAAAACCTTTCAGAAATATAATAGCAATGCCTTCTCATATTGAACTTCTACCACCTCTTAACGCTAAATGCGTGCGGGAAAATGGCAAACAATATTATGTTGATGCTTTGGGAAACCGTTTGCCAAGCGTGACAACTATACTAAATGTGACAAAACCGCAAGAGGATCGGGACAGACTCAACAATTGGAAACTTCGCGTTGGGATAGAAG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTTTGACTCCCTAATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 24 8467549-8465774 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 8467548 37 100.0 37 ..................................... CGGTAGAATTTGGCTACAGGCAAGCCATTGGAGGAGC 8467474 37 100.0 40 ..................................... ATCGCTGGATCGCACCCTGCTACATTCGCTACCATCTGAG 8467397 37 100.0 35 ..................................... AATTTTCTAACTTAGTTCCTTCCAAATCCCAGCAG 8467325 37 100.0 35 ..................................... TCAAAACTCAAGATTTGGTGAAGCAAACGCTAGAC 8467253 37 100.0 38 ..................................... TTCCCAATAGTTTTGAGACGCGATCGCGCCTTCATGAG 8467178 37 100.0 34 ..................................... TTGAGTGTTCCAATTTCCCAAAATGTAAATTCTT 8467107 37 100.0 32 ..................................... CAACTATGCTGCTAATTAGCAGTGGGATGATA 8467038 37 100.0 34 ..................................... CTGGGCAAGAGAGCGAATGCTCCCGTGCTTCAGC 8466967 37 100.0 34 ..................................... CATAATTTAATCCGTACCAAACGATACATATAAG 8466896 37 100.0 37 ..................................... TATTTTGGTGGCTTGGAAAAACAAACGGAACAAGTAA 8466822 37 100.0 38 ..................................... AGAAGCAATTTGAACTTGTGCTCCAATATATTCACCAG 8466747 37 100.0 35 ..................................... GAGATCCCAATCAGTACCATTGCTCATAAAGGCAC 8466675 37 100.0 34 ..................................... AAAATTGCAGAGCCAGAAGTAGAGCCAAAACCAA 8466604 37 100.0 35 ..................................... GATTAATAATCGTAGTCATTTTGCCAACTAGGTAC 8466532 37 100.0 33 ..................................... GACGGATAGCTAAAGCTAGCCATACACCAAACA 8466462 37 100.0 35 ..................................... CAGAGAAATATCTAGCCATTGCTCATAACCATTGA 8466390 37 100.0 34 ..................................... GTTAGCTGCGCCACTTTCACAGAGAATCAACAAG 8466319 37 100.0 35 ..................................... AGTAGATGCACTCTCTAGCGTTTGTTCCTAATAAG 8466247 37 100.0 35 ..................................... TTAGTATGTTAGCAGAAGGAGAAGATGCATCAGAG 8466175 37 100.0 34 ..................................... ATTAAAGCAACAACAGATGTTGTGGATATATGGA 8466104 37 100.0 35 ..................................... AGGTTAATTCAAAAACCAAATCCCCATAAACAAAA 8466032 37 100.0 34 ..................................... CAGTTCGTAATCGCTTCTGCACTGGCGATCGCTG 8465961 37 100.0 39 ..................................... TAGACATTGACGCCCTAGTAAACAGCCAACAACAAGCAG 8465885 37 100.0 38 ..................................... TTTACTGAATCCTCGCTAGCCGCAGTGTAACAACGAGT 8465810 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ======================================== ================== 25 37 99.9 35 GTTTTTATCCACCCTTAGGGGTTGGCTCCATTGAAGC # Left flank : AGACGATGAGTGGTTGTGTTTGCAAAGGCACAACGGCGAAACGATTGTCAAAGTTAGATGCTGCGATCGTGGTGTTTTGGATAAACCTGCCTTTTCCTTCCAAAGGCGTAGATATCATGGCAGGGGACAAAAATCATCGGATAAGGGGTACTGGTTGGAGATAGAATTTACAGAAGTACAGTTGGGACCAATCGCACTTGGGTACGCCGCACATTTTGGATTGGGTGTGTTTACCCCAGTTTTCAACTAAATTGCGCGGATGGGTGGCTGTAACTTTGCTCTAGTTGTAAAAATGCTGAAATTGCTTACTCTGTCAGGATCGCAGCCAATTGGTTTCAAAAGAGTTCCGCGCCAGTGCTCAAATGCTTGCCCTACAAGACTTATGGCGATTTTTGACAGGATAGGTTTGATGTGTTTGATGGCTGAAACAAGGTTTTGCTTGAACATCCGCGATTTTACCTCCCACAAACCAGATATGATAAGCTTTTCGTATGTCAGGG # Right flank : CTCTTAAAAGCTCTTTATAAAGAATAACACTAAGTAGGTAGGTGAGAAAAAACCGAACTATGTAAAGGTATGTAAATACGTTAAACCTCTTACAAATGACCAAGGACAAATGACCAATGACGATCCTGACTAGTTGACTTTAATTGTGACGACTTACTTATCCCATCAACAGTAACTTAACCAGTTTTCTGCTCATAAACTTCCTGTACCCGTTCGAGTTCTAAATCGCTCAGATAATCTATTGTCCAGTTAGCTTGGCGCTGTAGCATATGGAATGGGTAAGTATGGGCTACTCCAACCACTTGCATCCCCGCTTGTTTTGCTGCTTGTATACCAGCGAAGGTATCTTCTATCGCCAAACACTCTTCTGGCAAAAGATTTAAATCGGGATATTCCTGGTTTAGCCGTTTTACTGCCAGCAAATAACCGTGCGGGTCTGGTTTACTGGTGGTAATGTCATCACCTGCAACAATCAGTTTAAAATGTTCTGCTAGGTTGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCCACCCTTAGGGGTTGGCTCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 25 8538876-8538477 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 8538875 37 100.0 34 ..................................... TTAATAATACTAACGCATCTTTAGGGCTTGAAGC 8538804 37 100.0 34 ..................................... ATAAATATTTACCACGCGTTACTATATATTAAAC 8538733 37 100.0 35 ..................................... GCAAGAAATTCCTCTGCTGTAATTTTTGGGTTGTT 8538661 37 100.0 37 ..................................... CGAGCAACTGGGGGGAACAGATATCGCATATCACTTA 8538587 37 100.0 37 ..................................... TTTCGCCCCTCCTCCATCGCTTGAAGAATAAGAGATG 8538513 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 100.0 36 GTCTCCACTAACAATGTGGAGGCGCATAATTGGAAAC # Left flank : AAAATTCTAGAGTTATTTGATAAGGTTGGTCGTAGTATTCCAGGACATCTGAATCTTCTTCATACTCTTCTACACCTGGTAATTCGACAGAATGCGACTCGAATTGGATGGTTTTTGCCATTTTTCGACTGGCGTAGTCGCCTCTAACATTAATCCCGCTACTCTTCACTCGCCGGATTGGTTGAGACTCGCGGATTTGGGAGATGACTTGCCGAGCCGCTTGTGGTAAATTCACGTAGTGACACCAATCATTGAACTCAAGGTCACTCAACATACTGACTCCCCAAGCCTTCAAAGCACGCAACAGGCTCTTACCACAAATTTAGACTTTTGCTAATTCAATTTCTGGCTTCAATACAAATATTTACCATTACTGTTTCAACTGACTGCTGCCACTTTATGCTTTAAAAACTGCCACTTTTTGCTTTAAGTAACACTCAAAGTGGAAGCATTAAATTGCAATTTTGCCAATTTATGCTTCAAGTAACAGACTGGGTAAA # Right flank : TGAGACTTGCTTGCGCGATTTTCTCAAAGTCATCAGATAAAATATTAGGCAACATAATTGAGTCGTTGCTCTAGTTCCTGATGCAAAGCTAGGTAATGACGGTAATCATTTGCCCATTCTATAAATAGGGCATCATCTGACAATAATCCTTGATTATATTGGTTAAAGAATTCTTCAGAGTTCATTTTTTGTTTGTTTTCATACAAGCTCAATCGCTTGGCAACAGCAACTAAGGCATCTAATGGTGATGTATACTGAATAGTCTGTTTACGCATTGGCTCTTACCCTTGTAACAGATTTATCTGTGATGCTAAAACTTCTCACTGCTTTCATCTTAGCAAATTGTTAGTACGTTTTGTTACTAGACTTTCTCCCTTAGCCAAATACCATCGGAAACCCGCGTTTCCAAGCATAGGTTTTAATAAAGCATATACAAATTGAACCCAAACCGAAAGCAATTAGGGAAAACCTATGCTAACAACTCGTCGTGTCCTGATTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACAATGTGGAGGCGCATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 26 8544088-8543615 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 8544087 37 100.0 34 ..................................... GGGTCGTCGATTTAGAGGAAATGACAGTAGATTG 8544016 37 100.0 37 ..................................... GGCATAATACAGTAGTTGATGGCTAACAATAGCTTTA 8543942 37 100.0 34 ..................................... GTAAGATTAATAACTGTATGGCTGCCCGGTGCGT 8543871 37 100.0 37 ..................................... AGATTCAAGCAACTATTTGGTAAGTTGCTTACTTTTT 8543797 37 100.0 36 ..................................... TTGTTGGCAGCAATCAAAAGATTATCTGTAGTCCTA 8543724 37 100.0 36 ..................................... TAATCCCATTGAGTCAACGGTCTTATAAAAGTCACC 8543651 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 100.0 36 GTCTCCACTAACAATGTGGAGGCGCATAATTGGAAAC # Left flank : ACCACGTTAAACAACCATTTTTAGAAACTATCAATATATTAGGGATACCTTACGAGCGCGATAAATTGCAGAAAAAATTGAAAAAAATAGCTGACAGTTTAGATGAATGATACATGGAGATTCGCCAAAATGCCCTCACTCCAGAAGAGTGAAGCTATACGAACGAAGCCTACCTCTGCAGGCTGTAAGGTTACATATTGTGCGATCGGCTAATCATACTTTGCCAACGACATCACTTGAGCACCGTAACTGCGCGAACCAGAAGGTGTATTTATCGAACGCTTGTTATATAACCTCCAACGACTTATCAGTCATAGCTTTGAAGCATTTTAGTAGAAATCGAGGTTCGCGCAAACTCTGAAACCCTTACCAGAATTAGATTTACAGCGACTTTTTACAGGAGGGATATTGACAAGCGATCGCTCAAACGGTACTTTTTTATCTAGTCCGCGCAAATGGGAGTCGAAAGTCTTGTTCTCCAAGCTCTCTAGACCCCCGTA # Right flank : TAAGCATTCTGATGCATCCGGTGACTGTGTTACTTGACCCATAAATCTGCACAGACTGTAAGGATAAATTTGCACACTGCTGTTACTTAAAGCAAAAAGTGGCAGTTTTTAAAGCATAAAGTGGCAGTAGCGGAAAACCCCTGTTGATACAGGGTAAAATGATATTGACTATTCAAGATTGCGTCTTACCTGTTTTAAAACCTCAATGACTTCAGAGTGCCACAATGAAGAGGGATTCTGCATAAATTTTCGCAGATTTTTAGCAGTGGGAGTAATGCCTTGTGCATGAAGCACTGGAGCTAGTTGCCTGACTTCTCGACAACCCTGCTGAATTGATAGTTTATGAAGAAATTTTCGGTAATCTTTGTAGCGCAAAGAAATAGCATGGCACAAAGTAGGGCAATAGTGGTAAAAAGTTGCCAGACCAATCCCAGTCCTAAGAGCTATTTTTCTCAGAGAAGGTGGTGGAGACTCCGAGCCAAAAAGAGACAATTCGAGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACAATGTGGAGGCGCATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 27 8556639-8555445 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 8556638 36 100.0 37 .................................... TTGGCCATCACAAAATGTTTGACGACGGCACTTGTTG 8556565 36 100.0 36 .................................... AATCTTTGTTCAAAAGAAGAGCTGTTCTCTTGAAGG 8556493 36 100.0 35 .................................... GCAAACCATTACCACCACGCGAAGAAGAGTTAGCT 8556422 36 100.0 38 .................................... ACCAAGAATCAACGAAGCACAAAGAGCAACGAAGGAAG 8556348 36 100.0 31 .................................... GCAATAGTAAAATTTCCACCGCTTCCATTAA 8556281 36 100.0 37 .................................... TAAAGTGTACTGATCACGAAAATGGAAATCGGACAGA 8556208 36 100.0 35 .................................... TCAAAGTTAGGAACAGAAGAAAAGTTTTGAGAATC 8556137 36 100.0 37 .................................... CAATATAGATGGATACAGTCAATTGACAAATGCTAAG 8556064 36 100.0 35 .................................... CTCCAGCTTTAACACGAACACGGGGGTTTCCGGTA 8555993 36 100.0 35 .................................... CCAATAATCCTCAAGTACATGTTGATCCCACTTCA 8555922 36 100.0 35 .................................... AGGTTAAGAATCCCAACAAACGCCAAAGTGGAAAC 8555851 36 100.0 39 .................................... GATTCCGATGGCAAAAGCCAGAAAATCAAGGAGATGTCA 8555776 36 100.0 39 .................................... ACAACAAAAAATGTTACCACTACCGGAGCACCTGCAAGG 8555701 36 100.0 36 .................................... TCAAAACTCTAATAAAAGAGAAAACCGGGGGTTTTT 8555629 36 100.0 39 .................................... AATAAAGGAACTCTTCCTGATGACCAAGCGTTACCATTC 8555554 36 100.0 38 .................................... AGCGTATGTTTCATTTTGATCGCACTTTTCTTCGTTGA 8555480 36 97.2 0 ...................................C | ========== ====== ====== ====== ==================================== ======================================= ================== 17 36 99.8 36 CCCCACCGATTGGGTTAAATCGGAATAATTGGAAAT # Left flank : TTATTTAGCTTTTGACCTCATGGAGGAATTTAGGTCTGTGATTGTTGATAGTTTAGTTTTGAAAATCATCAATAACTTTGTGTTTAAAACTCAAGATTTTGATGTGTTGTCGAGTACAGGGGGGGTATATTTGAATCAATCTTCTAGGCGAGTTTTTCTGAAACAGTTTGAAACCCGTATGAATGAAGAAACATCCCACCCAGATTTGCAATCTCAAGTTACCTATCGTCATGCAATTCAATTGCAAGTCAGACGTTACAAGCGTTGTTTATTATCAGGAACTCCCTATGAAGCCTTTTTAAGACCTACTTAATTATTTTGCATATAAAGAATAAGCCTGACTTTTGAGAAAAGTCGGGCTTATTGTCTACAAGCACAGGCTAAACCAACAGAATTTTGCCAATAATTTTGAATAGTAATCGATTATGTATTTTGAGTAAAATAACTTATACTTTTATTAATTTATACTTTTAGAAATAGACACCTTGCCATCAGCTATC # Right flank : ACGACATTCAACCCTCTGCGCCCAACGCAAGGGGAACCTACCAAAATGTCAGTATCGGTTTTGTTTGGGTAGCAGGAAGTATTCCCCAAGGGGATGCACTACAATATTGTCCTCAAACACAAGAAACAGTCAAAAAGTTAAACCGCGAGCATTTTACACTCTAACGTAGTAGGAAGGAACCTTAGCAATTGAATAAAAGTTTTTTGTTGAGCATTTCCACCTTACAAGTATTTTACAAATCCAATAGAATTACTATATAATTGAAAATTGCTCAAAGTTGACAATCCCAAAAAGTCTTAATTATGAAAACCGAACGCGAACGCGAAAAGTTAATTCAAGATATCAATGACCTGCTAAATCAAGCTTATGATAGTACTCTAGATGAAATTTACACCTTCCTGCAAAAAATCGAAGAAGAAGAAAATTTAAAAGCATATGAGCTAGCTAAAAAAGAGGCTGAGGTTGAAGGCTCAGTGTCATGGGAAGAAGCTAAAAAAGAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAAATCGGAATAATTGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 28 9129604-9130791 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ976354.1 Scytonema hofmannii PCC 7110 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 9129604 37 100.0 38 ..................................... AGATATAGATTTAGATACAGTAGTTAGAAAAACATCTG 9129679 37 100.0 36 ..................................... GGGATGCTCTGGCTCATCGCTCTGTTTCTCGAACTT 9129752 37 100.0 34 ..................................... AATTGTGATTTTGTTTCAAGATTCCAATATTTAG 9129823 37 100.0 32 ..................................... AGTACTGATGCCTGACCGCACCGATTATTTTT 9129892 37 100.0 37 ..................................... GAAAGAAAGCGCATAGGTCTGCATATCCTTCTGCAAA 9129966 37 100.0 34 ..................................... GGTAGTAAAACAAAGGGATACACAGCTTATTTAG 9130037 37 100.0 33 ..................................... ATATTGAAAAATTTAACCCTATATTTCTATAGG 9130107 37 100.0 33 ..................................... AAGTAAAAATGGTTCACAAGCCATTGCAAACTC 9130177 37 100.0 39 ..................................... TTCTACTAATTCTAGTTCGTTTACAAAAACCCATGGTTG 9130253 37 100.0 33 ..................................... CCATTGGCGTTAGACCCAATTGTACCCTTTAAC 9130323 37 100.0 34 ..................................... GCAACTAACCCCGATATGAGCGGAAAAATTTCTC 9130394 37 100.0 34 ..................................... CCTTTATCTACAGGTAGTACACGTGTAGCATCAA 9130465 37 100.0 37 ..................................... TTTGCCATCATGCCCCACTGCTTGAGGCACTCACAAG 9130539 37 100.0 34 ..................................... GGCGCAATCACGTATGCAAAACGCCACGCTGACG 9130610 37 100.0 38 ..................................... CTTTTGATAAAATACGCCAGCAAGATAGCCTTGGCAAT 9130685 37 100.0 33 ..................................... GGAACTTTTTGCTGCCAATAATTTCAAAAGAGA 9130755 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 100.0 35 GTTGCAACTTATACTAATCCCTATTAGGGATTGAAAC # Left flank : ACTGCTGAGAATGTCATTTTGATTGATGATTTACAAGCTCTGCATGCAGGGGTGAAAGCTTTACAAGGTTCTTTCTCTCTGCCGTTTGATGGTTGGTTAGTGAACAAAGGTGAGAAAATTAGCATTGAGTCAGCTACTGTTGCGGGAGATTTTTTGGAAGTCCTCAAGTCTATTCTTTTTGTGGAAAAAGAAGCGGAATTAACTCCTGGTGGGGTTTGTCCCAGAGTTTGGGTTGATGAACTCTCTATTACTGGTGAGTAGCTAGATTTTATTGCGCGGATGGGTAGGTGTAGAAAAATAAGTTCCCAAAAAAAGTACTCTAAAGCTTTGATATATAAGGCTTTGAGTCCATTTAAAAACAAAAACCATCCGCGATACTTACCAGATAAGCTTTTCAGCGATTTTCTCTTGTCACTACCACCCGCGATCGTGCTATGATTAGACCATCCGCGCTACCGCACCTTGAAAACCACATATAGTAAGCTTTTCAACTCCAAGCA # Right flank : CAGTGCGACTCGTTTTAGAGTAAAAATACTTAAGTATATAGCTCTAAGTGAGAACGACAAGGAAAAACCTTGAAAAGCTCATAACTGATTTCTGGATGTAGGTGAAAGCCCTACCCTGGAAAGGAAACAGTGACCCCCAACCTGCCCACGCTGAATAGACTCGGAATTCTATAGAGCGAAGCTGGGAACAGGACGCAATCAGAGCCAAAAGCAGATATGGCACACTGGCGTTAAAGGGAAGATGAAATGGATAAACAAGACCTAAAAAAGCGTCTTAATCCCAAGCGGTAATCTGGAAACAAAATACTGACCTCACACCCGATTCTCGCGGCAATCTTGTTTCGTTAGCCGTATTCCTATGAGAAGAGTGTAGGCGAAATGGTCTGTCCTAAATCATCAATCAATCAGAAATTGGAACGAGGAAAAATGGTGATGGAGTCTGGGGGGAGGTCGAAACCCTAGTAAGCGAGACGAGACGCCGAAAACTTCACATCAGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTATACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA //