Array 1 2969-293 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOB01000017.1 Kurthia gibsonii strain NBRC 15534 sequence017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2968 32 100.0 34 ................................ TTTGATACGATGTGTTTCCGTGCGAACGGTCCGA 2902 32 100.0 34 ................................ AGTGTGTGTGCATGGAATGTTATTAATTACAGAC 2836 32 100.0 35 ................................ CCCATATCATTCTGTACAACTAGTACAGGACGTAT 2769 32 100.0 35 ................................ AAGAAACTGTAAATGCGAATTTAACTACAAATAAT 2702 32 100.0 34 ................................ AAAATGATATGGGGAATAAATTCAGTCCTTGTTT 2636 32 100.0 35 ................................ GCAAACTCTATTATTGTATAGTAGAGGTACCCTTC 2569 32 100.0 33 ................................ TAATTTTCGCGTCCGTTTCAGCGTCCACTTGCC 2504 32 100.0 34 ................................ AAAAAATTAAGCACATTTGTTAAAAAAGTAAAAT 2438 32 100.0 37 ................................ CTGAAAAAACTCAAGATTTTAACGGAATGGTGTTCCA 2369 32 100.0 35 ................................ ACTGTAACATCGAGTCGTGCATCGTTTACAAGCGC 2302 32 100.0 33 ................................ AATTAATACATAATCCTTTTCTTTCAACTCATC 2237 32 100.0 35 ................................ TCGTAATTAGATAGAGAATTCTTTTTAACCCCGAT 2170 32 100.0 34 ................................ AAAGGGAAGATTAGTATTAAATTTTATGAGGAAT 2104 32 100.0 35 ................................ TTGGACATCGTGTTGATATGCAATACCAAAGCACG 2037 32 100.0 35 ................................ TTCTAGCTGGTTAACTAACTTGATTAGCTGTTCTT 1970 32 100.0 32 ................................ GTAATTTTCAACCACTCGAAACGTCGGTTTTT 1906 32 100.0 35 ................................ GTGCGCAGTGGCGGAAAAAAATCTTCCACGATAAT 1839 32 100.0 33 ................................ GTTTATCTAAGTCGGTCAACTTCGGTGACGGTA 1774 32 100.0 34 ................................ AATCGCTTGATGACTTACGAGCAGCACAAAAAAT 1708 32 100.0 33 ................................ ATACATATCACTCCAAAAACTTTTATTTTTTCC 1643 32 100.0 34 ................................ GTACTAGCAAAATCTGAATTAAATGTTTATTTTG 1577 32 100.0 33 ................................ TGGACAACTTTTATCATTAACTTCACCATTATC 1512 32 100.0 35 ................................ TAATGGTTTGTAACCTAAATCATCTACATCTACAT 1445 32 100.0 35 ................................ TAAATCAGTAAACGGTTTAATTGCAGCTGGATTAT 1378 32 100.0 34 ................................ TAAATTAGCCGCAATAAAAATATTCGCCTCATTT 1312 32 100.0 35 ................................ ATTATCAGTAAAGTATTCATGTAAATCAATATGAC 1245 32 100.0 35 ................................ TAAATCTCTTTTAACTGTAAGTGCGTTATAACCAC 1178 32 100.0 35 ................................ TAAAATCTCCGTCAAGATGTCTTTAATCCACTGTT 1111 32 100.0 33 ................................ GTGTTGAGAAAAACAAAAACTACGTCACTATGA 1046 32 100.0 33 ................................ TCCAAACTGTGATGTTTATAAAATCCGCTTTTT 981 32 100.0 36 ................................ ATGATTATTGTCTTTCTTAACTCTATGCTTGAAAAC 913 32 100.0 33 ................................ TGGAACTGCTGTGTACCACTTGTTATAAATTTC 848 32 100.0 33 ................................ GCATTGGATTTTTCTTAGCATTACACACCCTAA 783 32 100.0 33 ................................ AAAAACAGCAACTTTGAATATACTGATGACAAA 718 32 100.0 33 ................................ ACAAAGGAAGCATTGGTGTTTGTGTAGTAGATG 653 32 100.0 34 ................................ GCTTTTTGTGCTGCTCTTAGATCCTCGATTGACT 587 32 96.9 33 ..........T..................... TTAATTAAAGATTGGATAAAGTTAAAACTATTT 522 32 93.8 35 ..........T.........A........... TGCGACACGTAATGTCACGTCAAAGCCTGCTGTAC 455 32 96.9 34 ..........T..................... ACCAGGTGCTGGTGTCGTTTTTACATACGTTGCT 389 32 87.5 33 ..........T..CC.........G....... TCCATCGCGTGTATTTAAATTTTCGATATTAAA 324 32 81.2 0 ....T................CAT......TA | ========== ====== ====== ====== ================================ ===================================== ================== 41 32 98.9 34 GTCTCACTCTATATGAGTGAGTGGATTGAAAT # Left flank : TTATATATCAAATTTGATTATACACAAGCAACAGGAAACTTTTGGCCGCTACAAGTAATCTACAACAAAAAAGGCTATGGCTCTAAGTTAGCATGGTACACGCAAAAAGTTGAAAAAATGCCTGTTCAAGAATTTTTAGGCAACATCTCGGCAAAGATTAATCGCAAGTACGATTTTACATTTAAAGAACCTTTAACAAAATAACGAATTACCTATTATTCTAGGAAGGCGGGGCTTCATTCATCACGAGGCGACTTCGCTTGCCTTTTTAGTTTAGAGGGATTTTGAAACAGATGTAAACAATGGAGGAGACTTCGTTGTTTTTTTATTTCTAATTTTATTTGTGCGAACCTTAGGTGAACATGAAAACCCAGGGAGGTTCGCACCAAAAAAACGAGATTTATTGAACAAATAACACCATTAAAAATAATATATGGTAAAATAAAGAGGCGATTTGATAAAAAAAGATGAATTATATTCTTTTTTAACATAAAATCGCA # Right flank : ACTGTCGAAGATTTTAAAACAGTCACTGATAAAAAATTACTTATTTTGCTCTTTTATAGGCATACTATTGTGGTAAGTTTTTATTACTAGATTTTTAAATTCAAAACAATAAAATAAAAAGTTATCAATTACCCAATTCATTTATATAATCGTAACTATCGTTGTCCTTATAGTGTTTTTTTATAATTTATTTAACATTAATGTTTAAAAAAGTAACTAAATAGGTATTGTTTAACTGTCATGTTCTACATGTGGATTGAAATTAATTTTTATATTTTTAAGCTTTTGTTTGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTATATGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8394-11921 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOB01000026.1 Kurthia gibsonii strain NBRC 15534 sequence026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 8394 32 100.0 34 ................................ AGTAATATCTCGAATCTTTGTATGTCCGATACAG 8460 32 100.0 34 ................................ TTTTTCATAAATTAAATATAGTCTACTAAGTGCC 8526 32 100.0 34 ................................ AATTAGAAAAGAAAAATTACGTGGTGGATTACGG 8592 32 100.0 35 ................................ AATGCTGGGGATGTTAAATCGTGCGGCTGCCTTAA 8659 32 100.0 34 ................................ GTAAAGATACGACAGCAAAAGCGCCGGAATACCC 8725 32 100.0 34 ................................ TTTATCCGCTGCGCCTACACCCGCTGCATCGCCA 8791 32 100.0 33 ................................ GTCAAAAACAAAATCACCATCTTTAATTTTTAA 8856 32 100.0 34 ................................ GTTGTAATTGTGCCGATTGGTGTCACTTTGCTTG 8922 32 100.0 33 ................................ TTTTGGTGTATATGTGTCCGCTGTATAGTCTTG 8987 32 100.0 34 ................................ TTAACCAAAATCAATGGGAAAGAATTTGTTAATC 9053 32 100.0 33 ................................ AATCACCGAAAATGGCACAAAGATGAACTTACC 9118 32 100.0 35 ................................ TGTCACAAAGTCATTACCGTCAAAGACGTGATGCC 9185 32 100.0 34 ................................ AGCGACAAATTGTTTTGTATCTTCTTCACTTGAT 9251 32 100.0 33 ................................ AACATGAAAAACATTACAGATCAAGCGCGTATT 9316 32 100.0 34 ................................ AGAGCAGGACAAAGAGTTACGCGTTGAAGTCGAA 9382 32 100.0 35 ................................ AGTGATGATCATTTGTTAACGATTACGCAGTCTTA 9449 32 100.0 35 ................................ ATGCCATCTCGTCATAATGACAATGACACTCGCTC 9516 32 100.0 33 ................................ TTTTGGTGTGTATGTGTCCGCTGTATAGTCTTG 9581 32 100.0 33 ................................ TAGTCGCGCTTTAGGGTTACCATCTTTGTCCGT 9646 32 100.0 34 ................................ GAGATGTGGCGCAAGAGCAAGAACGTTTGGAATC 9712 32 100.0 34 ................................ TCCAAGACCTCTTAAAACTGCCGAACGACTTTCT 9778 32 100.0 32 ................................ ATCAGTACATTCTCGACTGCTAGCGATAACAT 9842 32 100.0 34 ................................ CACTCGTATAAATCATCTACACTGCAACTTAAAG 9908 32 100.0 35 ................................ CGAGATACCCCAATCCTTATTAGCTGCGTTTGTAT 9975 32 100.0 33 ................................ TTTATTACAAAAAGTTGTTATCCATGCTACGTC 10040 32 100.0 33 ................................ AAAATTGCTCGTTTTAAGTTGTTCAATGAGCAA 10105 32 100.0 35 ................................ GAGGTAAACGGTGAAGCAGTGAAGTTAAGTGGTAA 10172 32 100.0 35 ................................ TGTTGTGCCAAAATGATCAACGTAACAATTGTGTC 10239 32 100.0 33 ................................ TAGATTCAAGAATTGTCTGTCCTCCCAATCCTG 10304 32 100.0 34 ................................ GTAAACAAAAACACCCTGCTTATCAAGTTTAGCG 10370 32 100.0 34 ................................ CGACTGCTGATGTGTAAGTACCGTTGATATCCGT 10436 32 100.0 34 ................................ GTTACAATCGTGACACGAAACGAGCGGATATACA 10502 32 100.0 33 ................................ TGGTGTTTCTTTGTAGTCTTTGATATATGTGCG 10567 32 100.0 34 ................................ GTGCGTTGTTACCTTGTAAATCTAGTTTGAAGTC 10633 32 100.0 34 ................................ ATTGCTATTGATACGGTAGATGAATTAGTAAAAA 10699 32 100.0 37 ................................ CGCCAACTGCTGTACCTACTGGACCAGCGACAGTACC 10768 32 100.0 34 ................................ AATTGTGAAAGCATAATGTTCACTGTCATTTTGT 10834 32 100.0 35 ................................ AATGTGTAATTGTGATAAAGATTCTTTACCTTCCA 10901 32 100.0 34 ................................ ATATTTCTTGCTCCGCCGATTTTCTGTGCTTTCT 10967 32 100.0 34 ................................ GTGTGGATAAAAGATTCGTCGCTACGTTTTTTTC 11033 32 100.0 35 ................................ AAAGGAGGGGTTAAATAATGCCGGAAAAATTACGT 11100 32 100.0 33 ................................ TATACAGAAATAAAAGTAATTTAAAATGATTTT 11165 32 100.0 33 ................................ GAGTTCGCCTTTTTCGCACCAATTACGGATTGT 11230 32 100.0 33 ................................ GGCATACGTGAAGCACTTGCAACCATATCCCAA 11295 32 100.0 38 ................................ CGATGTGAGTGATGAAGTAAAATCACTCGCACGATTAG 11365 32 100.0 33 ................................ TAGCACTTCATGCGCTTGCTTTGGTGTTGTTAA 11430 32 100.0 34 ................................ AGCGACATCTAGCGTCAATTGATTATCAATGACT 11496 32 100.0 36 ................................ TTCTCGAGCTCAAACGCTTTTTTATCGAGCTTGGAC 11564 32 100.0 33 ................................ ACGTCCACAGGTAAACTCTTTACTCTGCTATCA 11629 32 100.0 33 ................................ GAATAAAAAACTCCCTAGATTGCACATTTCCGA 11694 32 100.0 33 ................................ GTGTTGAGTTTAGTACCTGGCGTACCATCTGAT 11759 32 100.0 33 ................................ TTTGTTAAATGGAACATTGAATTCAATTCGTTG 11824 32 100.0 34 ................................ AACAAGAGCTATATGAGCAATTAAAAAAAGATAC 11890 32 93.8 0 ..................A..C.......... | ========== ====== ====== ====== ================================ ====================================== ================== 54 32 99.9 34 GTCTCACTCTTTATGAGTGAGTGGATTGAAAT # Left flank : GGAGATACGGAAGAATACCCACCATTTTTATGGAAGTGAGGGACAACTAATATGCTAGTAGTTGTGACGTATGATGTAAAAACATCAGAGGTTGGGGGCGCTAAGAGACTAAGACAAGTTGCTAAAAAGTGTGAAGCTAGAGGAATACGTGTACAAAATTCAGTCTTTGAATGTCAATTAGATGCGACCCAATTAGTTCAATTAAAACATGATCTAACAAAAATTATTAATTTGAAAACAGATAGTTTACGATTCTATAGCATTGGTAATCAATATAAAAATAAAGTAGAACATATCGGAGCGAAAGAAGCAATTGATGTTCAGGATCCACTGATTTTCTAAGTGCGAACCTTAGGCGAACATGAAAACCCAGGGAGGTTCGCACTGAAATTACTAACATTTTTTAAGAAAATAAATCTAAATAAATCATAATATGGTAAAATGAATGTGCGATTTAATAAAAAAAGGTGAATTTTATCTTTTTTTATCACAAAATCGCT # Right flank : TATATCATTCACTCATACTAACGTAATTCTTTCCGCTTCACCAAAACAAGCAGGTAAATCAATACGATTTACCTGCTTGTTTATTACATACTCATATGAAGTTTTTCATCTCCACTACATCTCGTCATGTAGTGGCTTTTTTGAGTTGTTCGAGCTGTGTATAGAGATTGCTTGCGATGGCGCTGTGCGTGTGTGTATTTAGCCAGTCGCACCAAGTGATGCCCGCTTCATATAACGCGCCCACCCATACATTCAATTCTGCCTCCACTGTTTGTTCGTCGATCGTGCAGCGAATCGTACGCACATGTTGTTCCGTCTTGATTATAACCGGTGTATTTGGAAAATATCTTTCTGCTGTGCCATGTGCTACACATTCAGCAAAACCATCTACGATATATTGCCAGAGCGTATGTAATTCATCGGGTGCATGTTCGGTTGAGAGGCGTTTAGTAGCTGTTTGAATGGTGAGAAAGCCTTCAGCATTTGAAAAGCCACCTTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //