Array 1 32670-32330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKZE010000010.1 Campylobacter concisus strain H31O-S1 PW_t_contig00010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 32669 37 75.7 33 ..C.TGTT..........T..CT.........A.... TCAAATCACCTAGCCCACTTTGGCAAGTGTTCA A [32666] 32598 37 100.0 39 ..................................... TCTTTAGTTAGTGGCCTGATCGTAATTTCATAAGGCAAT 32522 37 100.0 39 ..................................... AGTTTGTTGTATGCTTCTAGGCTGTTACTTGCTACCATT 32446 37 94.6 40 ......................TT............. CCGTTTTTATCTAGTTTGCTAGCGCATATTTCACATCTTT 32369 37 97.3 0 ....................................T | AA,C [32335,32338] ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 93.5 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : CGCTTTTTAGCGCATACCCAAAGGCTCCTCGCACCTGCGAGCCGATAAAAAATGGCGGCTTTTGTGACGGCTCAAATTTCACTCTAAGCTCGGCATACCTCATCTAAACTCCTTATCTTCACATAGTCTAAAACCGCGCCCACCATGCTCTTTTTTAGAGCATTTTTTCTATTTATTTTAAGTTTGGGGATAAATTTATTAAGCTCTGGTAGTTTTATCAGCACGCCAAGACTATCTCTTGTCACCCTTATATCGCTAGAAAAGGTCAAAATCATATTAGTTTCATTATTCACTTCAATGCTCAATTTTAAAATTATCTTATTATATATAATTTAAAGGCAAATGTTTATATTTTTTAGATTTTTATTTAAAAATTATTATTTTTTATATATTTATGCATACCTTCATCACTCTTGTTTTTAGTTTAAATTTCCATCTTTTTGGCTAAAATTTAGAAAATTCGTGATTTTAAAGATATTTAAGATAGGTTCTTTTTGCTT # Right flank : TTGGTAAAGTTGTAGGTGGTGGCTTATATTGTTATTTGTAAAAATAAATGAGTGGTGCTTATATGCGTTTATTGGATAAATTTGGATAAGAACAGATTGGCTTAGATTTATGAAAAACTACAATAAAGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTATGAAAACGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACCTTTTGGTGAGCACGAGCAGATGAGTAAGATCTGCTTGATGATGAAGAAGACTTTGAGTAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTGTTGAATTATTTTGTTTTGTTGGGAGAATTATAAAAGAGTGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAGAATACAAAGGATAAAGTAATGGACGCACAAACCAGG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:0, 3:3, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 2 51763-53710 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKZE010000010.1 Campylobacter concisus strain H31O-S1 PW_t_contig00010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 51763 37 100.0 42 ..................................... TTTTTGTTAGCCATATTGGCAACTTTAAACGGCAATACTGTC 51842 37 100.0 41 ..................................... GTTGTTGAGGTTGTGCAACATAGCCTTGAGCTTGCTGTTGT 51920 37 100.0 46 ..................................... TTATCTCAATAGCATCCCAGACTAAGCGTAGAGTGCTCACAGTAAC 52003 37 100.0 39 ..................................... ATCATTCAGCACCTCAACTACCCAACGCATCATTAGGGC 52079 37 100.0 37 ..................................... AAGGCTCATAATGAACCTCTATCTCTAACTTAATATC 52153 37 100.0 40 ..................................... CTTGTAGGCTTACCTCTTTATTGAAGACAACGTGGTTGCC 52230 37 100.0 40 ..................................... CAACTGATTTTCAATTATTTCCATATCTTCGAAATCGAGG 52307 37 100.0 38 ..................................... AGAATGTGCTTGCTAGATTGAGCATTGGTGTTAGATGC 52382 37 100.0 41 ..................................... TTCGCTAGCTACCCAGTTAATAGTAGCTAGATTACCGTGTC 52460 37 100.0 42 ..................................... CTAACTATGTGGCTAGACTTACCAGTAGCTAGAGACTCTTTG 52539 37 100.0 38 ..................................... ATTGGTTCCGCTTCCTGAACAAAGCAGGCAAAACTTGC 52614 37 100.0 38 ..................................... AACTCTGGATAGAATCTATCTCTCTCATAAAATTCGAG 52689 37 97.3 35 ..................T.................. AATTGAAAACCTCTAGCCTCGATTGAAGCAACCCA 52761 37 100.0 33 ..................................... GGTGTAAGCGCCATTGCATTCGCCAGCCAAATT 52831 37 100.0 37 ..................................... GCTATCTTCTCCGAAGTAAGCTTTAGGGTTAGCTTCA 52905 37 100.0 46 ..................................... CCCCATTGAGCAATGTCAGTGTGGACATGTTCTTGCTTGCCCACAA 52988 37 94.6 38 ..TA................................. ACCTTGACACCTCTTTCCAATCTTTTTGTCATTCTGCA 53063 37 94.6 44 ..TA................................. AAGCACCCTAGGAGCATCATTTCAAAAATAGCCTGAGCTATTGT 53144 37 100.0 37 ..................................... CCGATTGTAACTGCCATTGGTTACTCCTTATGATTTT 53218 37 100.0 43 ..................................... CCGTTGTTTGAGATAATATAGCAAGGGGCGTAAAACCCTTGAT 53298 37 100.0 39 ..................................... ATATTTAATACGCACTAAAGGGTGCTGTGAGAAAAAACA 53374 37 100.0 41 ..................................... CTACCATCTGCGATCAAAAAGCCAGCAGGGATAGTTTTTTG 53452 37 94.6 39 ..TC................................. GCAAAGACGAGCAGCCAAGTTATTTCTTTGCTCAACTGG 53528 37 100.0 37 ..................................... TTCATGATGAGATTTACATTCTCTTCTTTAACAACAA 53602 37 100.0 35 ..................................... ATAAATCCAGTTGGCATTGTCATTGGTTGAACACC 53674 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ============================================== ================== 26 37 99.2 39 ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : AAAAGCTGCATGGCTAAAAGCGAGACCTTAGGCGAGGGCAAGATATTTTGCCCAAGCGACACCTATGTCTAAGCGCCTTTTTAGGGATTTGATTTTCGAACTTTTATAAATTTCAAAACGCCCTTTTTACCGCATTTTTATGTTTTATTAAGTTTCAAAAACTTCGAAATTCTCAAATTTCTCTATCTCAAAAAAGACTTTCTCGAACTTTTGCATTTTTGCACTTTTAAAGTTGCCTTTTTTAGGCACTTAGCATATAGCCCAAATTTGCCAAAATTCGAAAATCACACAAATTTTCACTTTTCATTTTAGATTTTCGAACTTTTTAGCTTTCATAAATGCCCTTAAACTCGCTATCTTAAGCTATTTGTAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAAGCGTTTTTTGGGCT # Right flank : CAGGTAGGTGCATCTAGCATAGTTCCCAAGTATTAATTCATAGATATATTTCATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGTCATATTGACCATATCTGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTACTGACATATGGGGCGCTTCATCTTTTGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAACGGCGAGCTATACTTCCGCTTAGCAGGTCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //