Array 1 60-1151 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CMXN01000040.1 Neisseria meningitidis strain NM1359, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
        60	    36	 100.0	    30	....................................	AAAACCAACCGGGTATTCATACACAGCCAA	
       126	    36	 100.0	    30	....................................	CCTATGCCTGTTATTGTTTTCAGCCTTTTG	
       192	    36	 100.0	    30	....................................	TTGCGTCTATGGTGTCCTTTGAGATGTCCA	
       258	    36	 100.0	    30	....................................	TTTCTTTTTGTAATTGTTCTGCCTTTTTTA	
       324	    36	 100.0	    30	....................................	CCAAATAGAAATACATACGCCGAGTAATTA	
       390	    36	 100.0	    30	....................................	AAAGGCAACCCACTAAATTTTGCAAATGCG	
       456	    36	 100.0	    30	....................................	AAAACCAACCGGGTATTCATACACAGCCAA	
       522	    36	 100.0	    30	....................................	TTTAAAACCGCAAACCAGTTTGTATCCTAT	
       588	    36	 100.0	    30	....................................	CCTATGCCTGTTATTGTTTTCAGCCTTTTG	
       654	    36	 100.0	    30	....................................	ATGATGCAGGCTGCTCCGTCATCGTCTGCA	
       720	    36	 100.0	    30	....................................	CCTATGCCTGTTATTGTTTTCAGCCTTTTG	
       786	    36	 100.0	    30	....................................	CTTCTGCCTTTTTACAAGCTCGCTTTCTTT	
       852	    36	 100.0	    30	....................................	CTTTAACTTTGACCGTGTGCAATCCAGTTA	
       918	    36	 100.0	    30	....................................	TTTGGTAAAGGTTTCTGTTGCGACCCGAAT	
       984	    36	 100.0	    30	....................................	AATAACAACCATTTTGTTATTTCGATTTTT	
      1050	    36	 100.0	    30	....................................	TACCCACGGTTTCATCCGGCTTGAACATTT	
      1116	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	 100.0	    30	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   CTCCCTTTCTCATTTCGCAGTGCTACAATAGTATTCGTCGATGATGGAAACTCGAGCATG
# Right flank :  TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.27   Confidence: HIGH] 

# Array family : NA
//