Array 1 163518-160926 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWMY01000038.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015011 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163517 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163456 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163395 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163334 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163273 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163212 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163151 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163090 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163029 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162968 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162907 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162846 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162785 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162724 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162663 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162602 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162541 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162480 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162419 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162358 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162297 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162236 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162175 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162114 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162053 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161992 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161931 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161870 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161809 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161748 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161687 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161626 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161565 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161504 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161443 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161382 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161321 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161260 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161199 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161138 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161077 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161016 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160955 29 93.1 0 A...........T................ | A [160928] ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181885-180025 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWMY01000038.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015011 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181884 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181823 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181762 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181701 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181640 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181579 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181518 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181457 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181396 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 181335 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181274 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181213 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181152 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181091 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181030 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180969 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180908 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180847 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180785 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180724 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180663 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180602 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180541 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180479 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180418 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180357 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180296 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180235 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180174 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180113 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 180052 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //