Array 1 9729-11562 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZKQ01000040.1 Escherichia sp. MOD1-EC6475 MOD1-EC6475_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9729 28 100.0 32 ............................ TCATGCCCAGATGAGACAATCTTCAGAAAATC 9789 28 100.0 32 ............................ AAAGCCTGGAATTTCAATTTTAATTTGGGGCA 9849 28 100.0 32 ............................ TCGAACCCAGCTTGCTGTAGCTGGGCAATGTC 9909 28 100.0 33 ............................ TTTGCGCTGCGGCACAGGTTGCGGAGAAATAAT 9970 28 100.0 32 ............................ GCAGATATCTCTATTGCTAAACTACCTGTTCG 10030 28 100.0 33 ............................ AGTTCGGGCCGAACAGCTCAAGGCCGATTTTTT 10091 28 100.0 32 ............................ GACAATGGGCGAGGAGCGCCGGGATCTGATCG 10151 28 100.0 32 ............................ TTAACAGGGCTATTTTTATTTACATTATGTGA 10211 28 100.0 32 ............................ GGCGAACGCTGCACACCACGGCGTTTCATCAT 10271 28 100.0 32 ............................ CCGCGCGAACTGGTCGCGCAGCCGTGCGAGAT 10331 28 100.0 32 ............................ GTCATACGTGTAAACAGTATCGCTACCCGGAT 10391 28 100.0 32 ............................ GCGATGGGCGTCCACGAACCACCTGGGCGCAC 10451 28 100.0 33 ............................ TCAATAATATTATCAATATAAAATATTCGGTAT 10512 28 100.0 32 ............................ GTGGCTAAATCAAAATCTGAATTGTTCGCACT 10572 28 100.0 32 ............................ GTAATCGGCATAGCTACGTATTTCACTTCCAT 10632 28 100.0 32 ............................ TGGCTGGGCGTCTGTATAAAGACAAATACGGC 10692 28 100.0 33 ............................ GCTCGGGCAAATTAAAATCAGGGATTTCCTGGA 10753 28 100.0 32 ............................ GGAGGGAACTACATGGCGCGCCTAACAACACT 10813 28 100.0 32 ............................ GAGCGCCCATATTGATGGGGATCAACACCTTT 10873 28 100.0 32 ............................ TGACTGAAGCGCCACCAGCGATAGAGCCGCAA 10933 28 100.0 32 ............................ GCACGAACTGCGCCCGGATTTATACCCGAACC 10993 28 100.0 32 ............................ GATCAATGCGGCGCTGATTTCTCGCTGCGCCG 11053 28 100.0 32 ............................ AGGTCTGTAGCGTCCTTGTAATCTCTCGCTTT 11113 28 100.0 32 ............................ ATGATCAGCTGGCGCGGAAAGGATGCGGATAA 11173 28 100.0 32 ............................ ACCAAACTGTGCGGCAGCTTTGCGGGAGATGT 11233 28 100.0 32 ............................ ACCAGAATTAATAATTTTTTCATCATTACGCC 11293 28 100.0 32 ............................ GGATACGTTCATTTCGAAACGGTGAACGGCCT 11353 28 100.0 32 ............................ AAGATAAGAGGCAAAGCGTTCAGTGGCATCAT 11413 28 100.0 33 ............................ ACCGAAACAGCCATGACCTGGCTTAAAGATCAT 11474 28 96.4 32 ...............A............ GCGAACGTCAAAAAGAACTGGTGGCAGCAGGC 11534 28 85.7 0 ...........A........T...C..T | C [11557] ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTATGACCGGGCAATGGGTGCACGTCCGATGGCGCGTGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGTTGGTGGACGGCGGCCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTCTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTACTGTAACTTATTGATAATTAATGCTGCTGGAAGGTAAGGATAAAAAAGGGTAGCAGCAGGGAAATTAGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGG # Right flank : TACGATAATGGTAGACGTTTGGTCATATCATGACGCTCTCAACTTCAAAACATTAGTCTTAGCACACAATAACAATTGTAATAATTGCGACAGAAATCAATTTCCTACACAGAAATCAATGTTGTACTAATCCTAACGCCTTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGGGGGCGGGTGGAGTATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCTATTGCGAATACCACGGCATTAATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17085-16873 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZKQ01000045.1 Escherichia sp. MOD1-EC6475 MOD1-EC6475_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17084 29 100.0 32 ............................. GAGGCCGAAAAACATGAGCATCATGAACTCAA 17023 29 100.0 32 ............................. CTTTGCACAACGGCACCCTGAGTGGATTGTTA 16962 29 100.0 32 ............................. GGGCAGATCGCCCGCCGCGATACGCTGGCAGA 16901 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGTTGGCGACGCTGACCGATGATAAACCGCGAGTAATTGCCCTTCAGCCGATTAGCCAGAAGGATGATGCCACGCGTTTGTGTATTGAAACCTGCATTGCGCGGAACTGGCGTTTGTCGATGCAAACGCATAAATATTTGAATATTGCCTGATTAAACATTTATAAGCGTTGAAAATGAGTGGAACCTGTAAATAACTCCACTCATTTATATTCTTTGTCGCCTCTGAAACTACTCCATTTTGCCCATCCTGGACTAATCATTACCATTCTCTACAAATGCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTGAAGTTTGGTAGATTTTAGTTTTTATAGATTTATTTTAAATATTTACCTTTTCAGTCAATGGATTAAGTGCTCTTTAACATAGTAGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CATCACCCGTCCTCTATTTCCCATATTATTTTTCGTTCCCTGTATCAGCAATAAACAACATATCCAGGTAGTTCAAAATAACTCTCTACCCCCGAGAATTTCACACTTATCAACACAAAAAACTCAATTTTAATTAAACTGGCATTTGTATAATTACTTAAACTATTAAAACCTTCTACTATCTTGTTTCATTTTCAGCAATATATCCGGCTATTAATTAATTTTTCAGAATAAAACTAAAGAAGAGTTTGATTTTTGAACTTATTGTTCATTGATTAAGGAATGAATCAGTATAATTTGCGGTTGTTTTTTGAGGTTAATTAGTAGTTTTGCATAACCCATTTTATGCACTATTGATAAATAGTTCTTATGGGTAAAGATATTCAGTTCATACTTTAAGTGAGAATTGATAAAGTACGATTCGCGTTGTCCTTTATTCTAAGGATATCGATTGCAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTCTC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 428-935 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZKQ01000067.1 Escherichia sp. MOD1-EC6475 MOD1-EC6475_68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 428 28 100.0 32 ............................ TTGTATGAATCAGCCAGGATTTCGTAGGGTTT 488 28 100.0 32 ............................ GGCGCGGGAGTGCTTGATTTCGTATACGTCAT 548 28 100.0 32 ............................ TCGCGGAAAGCAAAGAACTGGTAGCGACAAAA 608 28 100.0 32 ............................ GCTCGCGTAAATCGCTGCCAGCGGCAGAATGT 668 28 100.0 32 ............................ TGTTGAATTACATCCAGTAACTCAAAGCTTGA 728 28 100.0 32 ............................ ACCTCAATACTCAAACAGGGATCGTTTCGCAG 788 28 96.4 33 .............T.............. AGAATGCTGGCACTTAATCCAACAGGAAATCTT 849 28 96.4 32 .........T.................. GCTAACGCGGAGATACGCCCCGGCTGCGGGTG 909 27 89.3 0 ...........C........-...T... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAAAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCACGCAGTTCATCCGACCAGGATTGTGACTGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCCAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGGGATTTTGTAAGTTTTAACAGTAAATCAATAGGATAGTCTGCTATTATTCCAG # Right flank : AATCCATAACCCCATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //