Array 1 38-738 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJYJ02000222.1 Streptomyces alkaliphilus strain IF17 NODE_222, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38 29 100.0 32 ............................. TGATATCCCGGTCCGGGTGGGGCGCTCGCGCC 99 29 100.0 32 ............................. AGCGGGGAGTGGCGGATGTCGTGGCCGTAGCT 160 29 100.0 32 ............................. CGGCCCGTGGCCCTGGCTTGGCGAGCCGGGGA 221 29 100.0 32 ............................. ATCGCCGACTACTACGCCCGCCGCCACCTGAG 282 29 100.0 32 ............................. CCGTCAAGGGCGCTACAGCCCTTGGGCGCAAA 343 29 96.6 32 ......................A...... GACCCGAGGAACCTGGCAACGCCGAACGCCTG 404 29 100.0 33 ............................. GCGGTCCGGTGGAACGCCACGCCGACCTCGGTG 466 29 100.0 32 ............................. TGATATCCCGGTCCGGGTGGGGCGCTCGCGCC 527 29 100.0 32 ............................. TGGCCACCCGCATCCAGCAGGCCGGCGGACGC 588 29 100.0 32 ............................. AAGGGCTTCGCCGGCCACCTGGGGGTCGCGGT 649 29 96.6 32 ...........................A. GGAACACCGTCGCCCTCCACCGCGCCCGCAAC 710 29 93.1 0 ..........................TT. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.9 32 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : TCCCGCGGTCCGGTGGAACGCCACGCCGACCTCGGTGG # Right flank : CAGAGAGTCATGCGCCCTCGTCACTCGCTCCGTGTGCCTGCGCCGGGCGCGGGGCCGATGAGTGACGGGCGTGCCCCATCCGTGCCCTTCGGAGCGGACAACACCGGTCAACAGCGGTGTTCACGGACCCGCCGGGACGGGTGGCGACGGGGACGTTTCCGCAGATCAGAGCGGCTTTCCGTGTGGAAGCGTCGGTGATTCCCAAGCTCAGAGCGCGAGTTCGATTCTCGTCGCCCGCTCCACTGCAAAGCCCCGGGTCAGGGACCTAATCCCGACCCGGGGCTTCGTTGTGTCCGAGCCTGCCAGGACTTTCGCGGCAGAATCGTCTGGCAGCACTCTTCGTCCTCGGCGAACGACAGCCGTGCAGGAGCAAGGGACCGCTGGCAATGAACCTGAGCGTCCAGTAGAAGCAGGCCGCCCGTCGGCAGATGGTCGTCACCGGACATGTGGCCGCCGCCGGCGCCGGGGATCCATCAAAAGTAGAGAATTTGCTACACTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4141-4352 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJYJ02000280.1 Streptomyces alkaliphilus strain IF17 NODE_280, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4141 29 100.0 32 ............................. TCGCTACGGCGAGCACTCTCGTCACGCCACGC 4202 29 100.0 32 ............................. TCCGAGATCTCCTTGCCCGTGACACCCTGCTC 4263 29 100.0 32 ............................. ACCCCACCCGCTGGGGCCAGGCCCACATGCAG 4324 29 82.8 0 ................C.......AAG.A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 CTGCTCCCCGCGCACGTGGGGATGGTCCC # Left flank : AAAGAGCGGTGGCATGATGGCGCGGCGTACGGCGACCAACCGAGGAGGGTCCGCCTCGCCCGTGGACGGTACGCCGGGCGGGTCCCCGAGCAGAGCCGTCAGTTCGGCGCCGAGCCCTCTCGCCAAGGCGTGCAGAGTCGGTAGACGAGCACTGTGCTTGCGTCGCTGTTCCAACTTGCGGACCACGTCAACGGATACACCCGCGCGTCCCGCCAACTCCTCTTGAGTGAGGTTGGCGATGCGGCGCAGACGTGCGAGTCGTTCACCCAGGTGCTCGGCCACGACTCAGAGAGTACGCCGAGCGGGGCGTACCGGGCGAGACGGGAATACTCACTTGATCCGGGCGCCGGGGGCGTTGAGAATCGCCGAGCTCCCTCCATTGGGGCCGCTACAGTGATTGCGTGCTGATGCCGGGGAAGGCCAGGGGGGGCGAAATGTCCGAACCTCGACTTCTTGTGAAAAGGGGTGACTCCTGCCGGTAAACCCCCAGGTCAGTCACT # Right flank : ATGTGGAGGTGGCCTTCGCGTCGTTCCCCGGGACACCGTCCCGGGGAACGACGCGAAGCCGGCGACGAACTCCGGCCCCGGGCGCCGCCCAGGGGCGGCTACGGGGTGGCCGGCCGGGTGCGCAGGGCGGCCAGGACCACCGGGCCGCCCCCGCTCCACCGTCCGGTGAGGGCGGCGTCCGCCGGGGCGACCTCGGCGCCGACGGCGCGCACGACGACGAGTTCCTTCCCGCCCGCGCGGACCACCGTGGTGGGCCCCTCGTTCCGACAGGTCAGGGTGTTCACGTCGGCGAACGCGGGGGAGTGCGGTTCGCCGCTCCGCTCCAGGCGCACGGTGGGCTCACGCGACTGCCGGTGCCCGTCGGCCTCGATCACCTCCTCGGCTTGGTCCTGCTGTCCGAGGGCGCACCTGATCATCGCCGTCACCCCGACCGGGTCGCCGCACGCGTCGTACACCCACCGCCTGCCGAGCACCGAGTGCTCGGTGGTGCCGATCAGGAA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGTGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2520-2664 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJYJ02000721.1 Streptomyces alkaliphilus strain IF17 NODE_721, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2520 29 100.0 33 ............................. CTCGCGAAAGGACAGTCGTGGACAAGATCGAAG 2582 29 100.0 32 ............................. GCCCCGCCCGGGGCCCTGAGCGCCCCTGTGGC 2643 22 75.9 0 ......................------- | ========== ====== ====== ====== ============================= ================================= ================== 3 29 92.0 33 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : CCACGGTGAGGAACCCATCTGGTGACCGTCATCATCCTCGCCAACTGCCCCAGCGGCCTGCGCGGGTTCCTCACCCGTTGGCTGCTGGAGATCTCCCCCGGAGTCTTCCTGGGCGCCCCCTCGGCCCGCGTACGGGACATCCTGTGGGCCGAGGTCCGCCAGTACTCGGGAAAGGGACGAGCCCTGCTCGCCTACCAGACCAACAACGAACAGGGCTTCACCTTCGAGAGCCACGACCACGCCTGGCACCCCATCGACCACGAGGGCCTGACCTTGATCCACCGCCCGAGCGCCGGAAGGCCTACCGGGGAGACACGCACTCCGAACCCCCCGCGCCAGGGCTGGAGCAAAGCGGCCAAACGACGGCGCTTCGGGAACCGGTAGGGTCGGGAAACCGGCTCCACCTTCCGAGCGAAAGACCAGGATCGCACCTTATGTCGGAATTTCTGCTAGTGAGTAAAAACAGGCTCCCGGCGGGGTAAAGACGCAGGTCGGCTCCT # Right flank : | # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10610-9299 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJYJ02000078.1 Streptomyces alkaliphilus strain IF17 NODE_78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10609 29 100.0 32 ............................. GCCCCTCCCCGACCCCGGGGGAGGGGCGTTCC 10548 29 100.0 32 ............................. AGCAGCGGGACGATGCCGTGGGCAGTGGCCGC 10487 29 100.0 32 ............................. CTCCACCCCCGCAAGGGGATGGCGGGCGAAGC 10426 29 100.0 32 ............................. GACTCGCCGGAGCGCACGGCGGGCGAGGTGTC 10365 29 100.0 32 ............................. TCGGTGACGGCCTACGGCGAGAACACGGAAGA 10304 29 100.0 32 ............................. TGCGGCCCGCGCCCGCCGCGCGGACCGCTACG 10243 29 100.0 32 ............................. GCCGGGGCGTCCCAGTCCTGACGGTCGGTCAA 10182 29 100.0 32 ............................. GGAGTCCCGTTCACCACGCCGGAGATGGACTT 10121 29 100.0 32 ............................. CTCTCCCACGGCCTGGAGGCGTTCGATGCGGC 10060 29 100.0 32 ............................. GCGAGACGCCGGCCGAACCGGTACGGGGTCTC 9999 29 100.0 32 ............................. TCCTCGGCGACCGCTTCGGCGGCGAACTCCCG 9938 29 100.0 32 ............................. AGGGCCGCCCGCCGCGCACCGGCGAAGAAGAC 9877 29 100.0 32 ............................. TCTGGGTCAAGGTCGGTCGGCGTGGGTACATC 9816 29 100.0 32 ............................. AACGTCGCGACGTTCGCGCACGAGAGCCTGGG 9755 29 100.0 32 ............................. TCCGCCTCGGCGACGTGGTCGAACACGTCCGT 9694 29 100.0 32 ............................. CCGCGCACCAACGAGTGGATGTGGAACGTCAC 9633 29 100.0 32 ............................. TCCTGCACCGTCACGTCGCTGTCGCTGTAGAG 9572 29 100.0 32 ............................. ACCTCGGGCTTCTATCCGCCGTGGATCCGGAT 9511 29 100.0 32 ............................. ACCTCGGGCTTCTATCCGCCGTGGATCCGGAT 9450 29 100.0 32 ............................. GTCCAGCGCGGCACCACACCGCCCGGCCCGGC 9389 29 96.6 33 .................A........... CGACTACGAAATTTTGTAGTTCCTCAGCGTGGG 9327 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.7 32 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : CG # Right flank : ATCCGTCAGGGGCGAATGAAGACCTTGGGTTTCGGCGGCAGCATCCGCCCCGAGGTTCGGCACATCATTCGCCCGGAGCCGGCGGGAGGTCGCCGTTCACCGGAGAGCGGCCCTGATACCCCCGGTGGGCCAACCCTTCTCGGTGCCTCGCCCTTCCGAATGTGTTCGCATGGATTAGACACATGGTGTTCGCCTACGCTAGAACCATGACGTGAAGCGAAGAGAGCTCATTCGGACGCTGAACATGCTGGCAGCCGAGAAAGGAGTGCGCTTCGCCCTCGAGCGACAGGGGAAACACGAGATCTGGTCCTTCGGCCCTCTCACCATCCCCGTCCCGAGGCACAACGAGATCGCCGAAGGCACAGCCAAGGCGATCATCCAGCGGGCTCAGGACGTCGAGTCCTGAGCCCGCTGGGCCCATCGCCCGAAGGAGAGGACGAGCGATGACCAGGACCGCGCAGAAGACGAGAGCAGCAGTACGAACCACCGCGAACGCGGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2309-1486 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJYJ02000797.1 Streptomyces alkaliphilus strain IF17 NODE_797, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2308 29 96.6 32 ............................T CGGATTGGGTCGGGGTGGCCGTGCACGCGGTG 2247 29 100.0 32 ............................. TCGCACTCGTCCCAGGTGATTTTCGAGGGGGT 2186 29 96.6 32 ............................T CGGATTGGGTCGGGGTGGCCGTGCACGCGGTT 2125 29 100.0 34 ............................. GCCCGGTGCTGCTCCTCTCGCAGATACGGGGTCT 2062 29 100.0 32 ............................. CTGCCAGTAGCCGGTGCGCGGGCAGGTGATCG 2001 29 100.0 32 ............................. CCCCCGTACTCCCCGGTCAGGGCGTCCGGGGT 1940 29 100.0 32 ............................. CTGTCCCCACACGACGAAAGCAGACGCCGCAA 1879 29 100.0 32 ............................. CGGTACAGGTACGGCTGGTCCGGGCGGGAATA 1818 29 100.0 32 ............................. CTTTTTGGGTCCGACCGGGCGCGGGAAAACCA 1757 29 100.0 32 ............................. CCCTCCACGTCGAGACGCTCCTCGACGCTGTC 1696 29 100.0 32 ............................. AGCACGGCCACGCCAGGGGTCATCGCCTCCAT 1635 29 100.0 32 ............................. TCCTTCTCCCAGTCCATGCTGTCCCGTTTCCG 1574 29 100.0 32 ............................. TGGAACAGCTTCAGACCCTGCTTCTTGGTGCT 1513 28 93.1 0 .....................-....T.. | ========== ====== ====== ====== ============================= ================================== ================== 14 29 99.0 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GTCCCTCGCACTCGTCCCAGGTGATTTTCGAGGGGG # Right flank : GGCGGAGTGACCTCGCCGGGTTCGGTCAAAGGGCGTAGGGATCCTCGCCTATGGTGTCGGCGACACGATCCAGCGACTCCCGAAGAGCCGGAGGAGCGCCCGGCATGACCCTTCCCCGCCGGATGGTGGCCTCCAGCACGCTCAGGGTGATGGTGGAGGCCATCTCCCCGGCCTCGGGGGCGAGGAAGTTCGCGACCTCCTCCGCCTCCCGCCATGCGCCCAAGTCGAGGAAGCAGGCAAGCAGTCGAACGGCGGCGACGTTCCGGTAGCCCACCGGTTCACCGCTCGGTGCGTGGGTGACGCGTTGCAGAAGGGGAACGGCTTTCTCCCACCTTCCCGATTCCTGTAGGGACCGCCCCTCCTGTCGGTCGAGCTCGTCCTCCGAGATCCACCACGACCACGGTGGGGCCGCGTCCGGGGGATCGTCCTGCAGCAGTGAGCGAGCCCGTCGAAAGCTTCGGGCGGCCTCCTCGTGGCGCCCTGTCCCGGCCAGGCCCTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38-2017 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJYJ02000894.1 Streptomyces alkaliphilus strain IF17 NODE_894, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38 29 100.0 32 ............................. TGGGCCATCTTGGCGAGAGTGTGGGCGTCCCG 99 29 100.0 32 ............................. TACGAGGCGCACCGCGCCGCGTGCGGGCGTCA 160 29 100.0 32 ............................. TGGGCCATCTTGGCGAGAGTGTGGGCGTCCGG 221 29 100.0 32 ............................. CAGTCCACGCGGTGCACCGGCTTCGTCATCTC 282 29 100.0 32 ............................. TCACCCTGGCCTGCCCCCACTGCAACACCTGG 343 29 100.0 32 ............................. GACCGTCCGCACCGTTGGTTATCGTCTGTGCG 404 29 100.0 32 ............................. TTGCGGTGCGACGTGACGGCCGACCGTGCCGA 465 29 100.0 32 ............................. CATGAGGCGACGCCCGAGCTGTGCGCGACAGT 526 29 100.0 32 ............................. GGCCGCTGGGTCCGCTGACACCCCGACCGCCA 587 29 100.0 32 ............................. GGCTGCCGGCCTGCGACAACTGCGGCGGCGAC 648 29 100.0 32 ............................. GCGACCGAGGCGCGGGCGGAGTACCGGCGCCG 709 29 100.0 32 ............................. GGCGTGCAAGGGCGCGGCCGGTATCGGCCGGC 770 29 100.0 32 ............................. TCTTCCCCGAGCCGGACGCCCCGGCCACGATC 831 29 100.0 32 ............................. TTGCTGCGCCGATTTCGAGCGCCCGGGCCGCC 892 29 100.0 32 ............................. CGACCCCGAACGCGCGAGGGCGCTGCGGGCCG 953 29 100.0 32 ............................. CGGGGCTCCACAGGGGGCCGCGGAGGGCGAAA 1014 29 100.0 32 ............................. CGCGCGTCCGAACGGGGGCCGCCGCGCAGCTC 1075 29 100.0 32 ............................. CGCAGCAGCCGACTACCGACCTTGCCGCCCTT 1136 29 100.0 32 ............................. CCGTCCCCGGCCACGGCGATGCGGTTCGCGCG 1197 29 100.0 32 ............................. GACTCGTTGGTGTCCCGCAGGGCGTCCCTCAG 1258 29 100.0 32 ............................. GCGGCTGGGGATCGTTCTCGATCGGCGACCCG 1319 29 100.0 32 ............................. GTCACGCTGACGATGCCGCTCGCGCGGGAGAG 1380 29 100.0 32 ............................. GTGGGTCATCTCCTGTGGGATGGTCATGGTGA 1441 29 100.0 32 ............................. CTCGGCAGCGAGCGCGACCTGATGGTCCGACA 1502 29 100.0 32 ............................. CCGCGGTCCACCACGGCGCGGAACTCCTCCGA 1563 29 100.0 32 ............................. AGACTGCGGATGGTCTGCATGTGGTGGGCCAT 1624 29 100.0 32 ............................. CTTCCCCTCGGGCAGCGGCTCCTGATCGCGGG 1685 29 100.0 32 ............................. TCCTGGGAGTCGGGCCCGGGCAGTACCAGGGA 1746 29 100.0 32 ............................. CGCGCCGGACTGCGCCCCTTGGGCTGGTCGCT 1807 28 96.6 32 .....................-....... TGCGCAAAGCCGTTCGCTCCTCCCGACTCGGC 1867 29 100.0 32 ............................. GTACACGACCTCCACGCCGCGGCCGGCGGGGG 1928 29 100.0 32 ............................. TTCCTCCCCGTCAACTGGAAGTGCCCGATCAT 1989 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : GTCCCTACGAGGCGCACCGCGCCGCGCGCGGGCGTCAG # Right flank : GTCGTCGGCGGGGGGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [11.7-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1118-822 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJYJ02000938.1 Streptomyces alkaliphilus strain IF17 NODE_938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1117 31 100.0 35 ............................... GCGCTGGCACAGCGGGAGGCGCCGGTGCGGTGCTC 1051 31 100.0 36 ............................... CCGCGACCTGGCGGCGGATCGCGCGGCGGTCGCCGA 984 31 96.8 34 ..............................C CGATACAGCTGTGGACAGCGCCGGGGCGCGTCAG 919 31 100.0 36 ............................... TCCGCCTCACCCACATGAACCAGCAGGCCAGCCCGT 852 31 74.2 0 .........G.....TT........TTGG.C | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 94.2 36 GTCCTCATCACCCCTACGAGGGGTACCAACG # Left flank : CCGCTGCTGTCGGTATGGGTGGACGACGCCCCGCACATCACCACCGGCCCCGGCGAACGCAAGGCCCTCAACCTCGCGACCAACCCGCACTGCGTCCTCACCACCGGCACCAACGCCCTCGGCCACGGCCTGGACATCACCATCGAGGGACCGGCCGAGCGCGTCACCGACGACGAGGCCCTGCGCCGGATCGCCCACGCCTACGACGCCAAATACGGCTCCGACTGGGCCTTCACCGCCCGCGACGGGATGCTCCACCACGCCGAGGGCGGCGAGGCCCTCGCCTTCCGCATCACCCCGACCACCGCCTTCGGCTTCGCCAAGGGCACCTTCGGCCAGACCCGCTGGCGCTTCTGACCGGCGGACCCCGGCTTGGTCGTCCCGCCCGGACGCCGGATTTCAGCGACACACCGGGGTATCGTGCACAACCGGAGGTCCGCTGAAAAATCGGCCCCCGGGACCGCGACTCGACTGTGCCTGACCTGGACCTTCACAATGGG # Right flank : GTGCCCCCTCCCCACCCTCAACGCAGCAGGTTGAGGGCGGAGAGGGTGGTGAAGATGAGGACCAGGCGGGAGAAGAGGGATTGGTCCATGCGGTGGATCACCGCCTTGCCGATCAGCGCGCCGACCACCACGGCCGGGGCCAGCCACAGGTTCAGGATCAGCGAGTCCACGGTGATCAGCCCCAGCCCGACGCTGAACGGCAGCTTGAAGAGGTTGACCGCGAAGAAGAACCAGGCCCCCGTGCCGAGGAATCCCATCATCGCGAACCCCGCCGACAGCAGGTAGAGCGCCATCACCGATCCACCGGCGTTGGCGACCATGGTGGTGAACCCGGCCGCCAGCCCGAAGGCCGTGGTGCGGGCGATGTGCGGGGCGGGCGGCAACTCCCCGGGGGAGCGCCGCCGTTGCTGCCAGACGTGCACGCCCACGATCACCAGCAGGATCGCCCCGATGGTGCGGCGCATCACCGTGTCGTCCACCAGTGCCATGAACACCGTGCC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTACGAGGGGTACCAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 823-1768 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJYJ02000095.1 Streptomyces alkaliphilus strain IF17 NODE_95, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 823 29 100.0 32 ............................. AGGTCCTCGCCCCCACCTACGGCGCCATGATC 884 29 100.0 32 ............................. CCGCGCGATGTTCCACGACCACCCGGGTTTCC 945 29 100.0 32 ............................. TCAGGGCCGCCCGGCACCAGCACGACCGCGAC 1006 29 100.0 32 ............................. TTCTTGAGGTCGGTGACGAGGGGGCCGGTCGC 1067 29 100.0 32 ............................. GGCCTGACCGACCACCGCACGGCCCGCTACCG 1128 29 100.0 32 ............................. CGCTGGTACACCCTGGACGGGATGCTGGAGGA 1189 29 100.0 32 ............................. GTGCTCATGACAACTCCGGGGGTGGGATTGGG 1250 29 100.0 32 ............................. CGCGCCCCGCCCGCGCGAACACCATCGCCGGC 1311 29 100.0 32 ............................. GGCCCTGCGCCGGACTTGTCCCGGGTGTGAAG 1372 29 100.0 32 ............................. CGCCGGACGGGGATGCCGTACCGGTCCAGGAC 1433 29 100.0 32 ............................. GCAGTTCTCCGCTTCCGAGGCTGCGGATGCGC 1494 29 100.0 34 ............................. TTGCCGGTGGTGACGTCGAACCAGAACTTGTCCA 1557 29 100.0 32 ............................. GTCACAAACAGTGGGTCTGAGCAGGGGGTTCA 1618 29 100.0 32 ............................. CGGTGCCGGTGGTCGAGCGGAGGGAGCGGGCG 1679 29 100.0 32 ............................. ATGCGCTTCGCCGGCGCGACCGCGCGGGACGC 1740 29 89.7 0 .............GT..........G... | ========== ====== ====== ====== ============================= ================================== ================== 16 29 99.4 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGTCCCGGACACATCGGCGCTGGTCGGATTCCTGGTGGGTGGGGACATCGCGGCCGAACGCATCCGTGGCCTCTTCACCAGGGAGATCCCGGCCGTCGTCCGGGGCATCGAACTCGACTGCGCCTCGGTGCTGAGCGTCCTGACGCACCGACACGACCTCCCGCCGAGCAGCGCGGATCGTGCTCTCACGCTCCTATCCCGCCTCAATCTCCGCTACTACGACCCCGCCCCGCTCCTCCCACGCGTCAGGGAACTCGATCCCCACCTCGCCCCGGCGGACGCCTGCCACATCGCCCTGGCCGAGACACTGCGCGTGCCCCTGCTCACCATGGATCGCCGCCTGGTCGGCATCCCCGGAGCCCGCTGTCCCACCCGCATCATCCGCCGCTGAGGACACGCCACCACCCGGGAGCCCCATGAACCGCCAGGTCGAAATGTCCGAATCTCCACTTCATGCAAAAACGGCCCACCCCGGCCGGTAAACTCCCAGGTCAGTTACT # Right flank : CGGGGCCGCCCGCCCCCGGGCGGCCTTGTGCCCAAAGTGATGGGGCGTCATCATGACCGGCATCGAGCCGGTGTGGCGACCGAGGGGGAGCGTTGCGGGGGAAGGCTGCGTTTCTGCGGCAGCATGTGGCGTCCCCACATGGGCGTTCGCTGATCATCGTCTCGGCCACCGGCGCACTCGCCCTTGGCCTGCTGCCCAATATCGTCCAGGCCGTTCCGGTGGTCGGCAGGGAGCTGTGGTGGATGGCGGCCGTCGCGCTGCTCGCGCTGCTCGTCTTCTCCTACCACTGGGCCAAGCTTTTCTCCCGCGACGGTGTCGGAATCGTTCTCTTCCTCCACCAGCCCGGCCCGCGCGGGAACCGTCCCAAGGAACCGACCATCGCGGCCATGCGGAATCACGCCCTGCGGCGGCACGCCCGCTGTTTCGTTCTCGACGCCGAGGAACTGTTGAAGAGCGACGGGGACGAGCGGGAGAGCAGGGGCGACCGGGTGTCGTTCCTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 336-1523 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJYJ02001080.1 Streptomyces alkaliphilus strain IF17 NODE_1080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 336 29 100.0 32 ............................. CGCCTCTGAGCTGCGAGTTTCCGGGTTTCCGG 397 29 100.0 32 ............................. TGCGCGGCGGCCAGCAGGACGGACGTCTCGGC 458 29 100.0 32 ............................. TGGCCCGCAAGGTCTCTGTGGTGGTGGACGAG 519 29 100.0 32 ............................. CGATGACCCCGAACCGCCGCGGGGTGTACCTC 580 29 100.0 32 ............................. TGGTCGCGGAGATGCAGCACCGGCAGCGGATC 641 29 100.0 32 ............................. TCCCCTACATGACGGTCCGGGCGGCGGCCCAT 702 29 100.0 32 ............................. ATGCCGACGGGCACGGTCTCCACGGTGCCGTC 763 29 100.0 32 ............................. CGTGGTCCGCGAGCACGCGGCCGGATACCTCT 824 29 100.0 32 ............................. TACATGCACGGTCGGGCCCTGTGGGGGCAGAC 885 29 100.0 32 ............................. CGCTGGAGGAGCAGAGGCACCAGGAGATGGAG 946 29 100.0 32 ............................. GTCCGCCGGTGGGCCCGCCGGGAGGGCGTCCG 1007 29 100.0 32 ............................. CTTGCAAAACGGCGGGGCCCCGACCATCACCG 1068 29 100.0 32 ............................. AGGGCGGCGGCCTCCTCGGGGCTCCAGGTGCG 1129 29 96.6 32 ............................A GGGCCCAGACGGTCACCTGGACCCGGGTCACG 1190 29 100.0 32 ............................. CGGGGCCCCCGACCGACCGGCCGGGGGCCCCG 1251 29 100.0 32 ............................. CACAGGGGCGGATGGATCGGCCATCCGCCCCT 1312 29 100.0 32 ............................. GGCGGGGCCCCGACCATCACCGGTCGGGGCCC 1373 29 100.0 32 ............................. GCATCGGCGGCGGCCGCGTGCCGGTGCAGGTC 1434 29 100.0 32 ............................. GGACCGATCGGAGAGCGCGTCCCGGAGCACGT 1495 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.8 32 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : CACCCCCACTTCCCGGCCTAGGCCCCACGCACCCCGCATGCACTCCGCTCACGCACGGTCTCAACAACGAACAGGGCTTCACCTCCAAGATCCACGACCACCCCTGGCACCCCATCACCCGAGCGCCGGGAGACCCACCGGGAAGCCACACCTCCCGAACACCCCGGACCAGAGGCAGGAACAAGACGACTCAACAGCGGTGCGTCGGAGAACCGATAGAGTCGAAGAGCCCACTCAGCCCTTCGATCGAAATGCCAGGATTGCACCCCATGTCGGAATCTCTGCTAGTGAGTAAAAACAGGCTCCTCGCGGGATAAAGACGCTGGTCGGCTCCTG # Right flank : GCCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5361-4995 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJYJ02000015.1 Streptomyces alkaliphilus strain IF17 NODE_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 5360 30 100.0 37 .............................. CTCGCACCACCACCATCAACCAGGCTCTCGCCCTGGC 5293 30 100.0 38 .............................. CGGGGCCGTGATCGCGGATCGGGTCCGGTGCGTTTCCT 5225 30 100.0 37 .............................. TGGCGAGGCTGTGCCCGGACCCGTCGCGGGAGGACTG 5158 30 100.0 38 .............................. GGCCGCCGACTGGGCGGCGCTGGAGGCCCGGCTTGGGC 5090 30 100.0 36 .............................. GCCCATCGCCTTCGTGGACTGCGAAACCACCGGCCT 5024 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 37 GTTGGTACCCCTCACAGGGGTGATGAGGAC # Left flank : GACCCGCCGGCTCACCCCGCAGCAACGCCGACGACGCGAGGACCTGGCGGACGCCGCCGCCGGCCTGGCCGACACCCCGCCACCGCTCCCGGTACCGGGGACCCGGCCGGTGCGGGCACTGGTGCGCTGCGCGGTGTGCTCGACCCTCACCCAGGAGGGTCGGCGGGTCGGGGAGAGCGGTGAGGGCGCGCCGGTGTGGCACTGCCCGCTGTGCGCGGACGGGAACCGGTGACCGCCCCGGCCGGGCGGTCCGGCACCGACACCCCGACCGGGATCTTCCGCTTCCGCGAGTACGCCATCGAACCCGACCTCGAACCGGACGCCGAAGCCTTCACCTTCACCGGCCAGTGCGCGGTGTGCGGGCGGCTGGGGCCCACCGGCGAGGGCGGCGGACACCTCACCGGCTGGATGCTCGCCCACCTGCGCGCCCACCCCGACCACCTGACCTACCGGGAGATGAGGACGCAGCTCCTCCTGGCGGCCGCTCAGGTCACCGGTAT # Right flank : CCCATTGTGAAGGTCCAGGTCAGGCACAGTCGAGTCGCGGTCCCGGCGACCGATTTTTCAGCAGACCTCCGGTAGTGCACGAAACCCCGGAGAGTCGCTGAAATCCAGCGCTCTCAGCGTACTCCGAGGAGCACCGTTCTCCCGGCGCTCCTCAAGGAGGAGCACGGCTGGCGATACGGCTGCGCACCCGTCTCCGCACAGAAGATCGACACTTCCGCTCTCCGGGGTCCTCCCATGGAGACCTCCGAAGCCAAGCGCCTTGCCACACCCGGAGAGGACGACCGGGCCCGTGCATCTCACTTCTCCGAGGACGAAGCAACAGCCGTTGGCTCGCCCGGTAACCGGGAGTACCGTCATGTGTGCGACCTGCAAGCCGGTAGAACGGGAGCCATTCCACCATGGCCGGTACGAACCTCGGGGAACGCATCCAAAGAGCCCGGAAGTTGGCGGGCCTGACCCAACGCGAGTTGGCCGCTCTCAGCGGTGTGTCCTTCTCATTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGTACCCCTCACAGGGGTGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 7519-8018 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJYJ02000015.1 Streptomyces alkaliphilus strain IF17 NODE_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 7519 31 100.0 36 ............................... ATGGCCCGCATGTGGGCGGATACGGCGTGCCACACC 7586 31 96.8 36 C.............................. CCATCCAGTCACAGGGTGAGTGCGGAGAGGCGTAGA 7653 31 100.0 35 ............................... ACCTTCGCGGGCTCCTCGGCCCGCGCGGGCTCCTT 7719 31 100.0 37 ............................... TAACCGGTGACCACGACCGCGAAGTTGTCCCGAACGC 7787 31 100.0 36 ............................... GGCGTGATCTCCCGGGACCACAGCGCGCCGTGCTCG 7854 31 96.8 36 T.............................. CTGTGCGTGCACCCGGCAAGTACCGCTTGTGCAAAG 7921 31 96.8 36 .................A............. TCCAGGATCTCCGGCAGATCCCGCATCTGTCCGGAG 7988 31 83.9 0 ............T.............TGGC. | ========== ====== ====== ====== =============================== ===================================== ================== 8 31 96.8 36 GGTCCTCATCACCCCTGTGAGGGGTACCAAC # Left flank : CGGTTTCCAACCTGCTTTCCCGGCTGCCCTGCTCGATCTTCCGAATCATGGAGAGGGACACGCCGGACCGGGCGGCGAGATCGCTTTGGGTGATGCCGGCCAGCTTGCGGGCTTCCCGCAGGCGGTCCCCGAAGGTGTGTCCTGGCATGGGCGTATGTCTCCGTTTCCCCCGTTTCGGCCGTCTCGGGCAGGACGGTACTGCCTTTCGGGTGGGAAGGGGAGAGCGCCCGGGCATCGCTGCTATGGCGATGGGCCAAGATGCTTGGACGGAGTGAAGTCCGGTGCAGGGACGGCCGGGTTGGCGAGGTGGCTCATCCGGCTCTGCTTGGTGGGCAGTGGCTTTCTCAGGCAGAACGCCGTGCGAACCACCGGCCCTCGACGTACGCTGGCGGCCCGGATTTCAGCGACTCTCCGGGGTTTCGTGCACTACCGGAGGTCTGCTGAAAAATCGGCTGCCGAGACGGTGACTCGACTGTCCCTGACCTGGACCTTCACAATGG # Right flank : CTATCCACCGGGTGGTGCGTCGGGTGGTTGGGAGCGAACCGTTCGTTGCCGGTGGCGTTGTTCAGGGGGAACGTGCGCCGTGTCGGTGGCCATGGCGGGATGCAGGGGAGTGGGATGCGGGCGGATGTGCGGCAGGTCGCGGAGGGCACCTATCTGGTGCACGGCAGCAACACCAACTGGGTCATCCTCGCCGAGGGCGGGGAGATGACCCTGATCGACACCGGCTATCCCGGTGACCGGCAACGGCTGCTGGGTTCGCTCGCCGAGGTGGGTGGTTCGCCGGAGCGCGTGGTAGCCGTGCTGATCACCCATGCCCACAACGACCACCTCGGGTCGGCCGAGTACCTGCGGGCCCGGTACGGCACGCCCGTTCTGATGCACGAGGCCGAGGTGCCGCACGCCCGCCGGGACTTCCTGCACCAGGTGTCGATCGGCACCGTCCTGCGCAACGGGTGGCGGCCGGGCGTGCTGCCGTGGGCCGTGCACGCGCTCCGTTCCGG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCTCATCACCCCTGTGAGGGGTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //