Array 1 48-470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENQT010000017.1 Clostridium perfringens strain CHD25834R CHD25834R_seq17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 48 30 100.0 36 .............................. AATGTAAATTCTTTTTCAACACTCTTATTCAATCCA 114 30 100.0 36 .............................. CAGATTAAAAGCAAATGAATTTGGATATGAAGAGTT 180 30 100.0 35 .............................. AAAATAACTATCATGGTTAAAGATATGAAAAAGGC 245 30 100.0 34 .............................. ATATAAAGAGAGTTTAAAAAAAGAATATGATAAT 309 30 100.0 36 .............................. AAGATAGTTGGGTAACTGTAACTGATACTGTAAATG 375 30 100.0 36 .............................. GACCATGCACCTATTATTCTTTCACCTATTCTAAAA 441 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 99.5 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : ATGTATTTAAATGCACCATCTACTGGCTTAGAAATTGGAGGATTATCA # Right flank : TATTAATACTGAATTCACTAAAAATTAAGTAACTAATTTATATTGTTTTTCAGTATAATATAATTACTTAATGTCTTTCTATATAAAGTTTTATAATTAAGTAGGGGTATAATATGAAAAAACTAGCTTTTATTATAAAAAATATTTTGAAATTCTGGTGGTGGCAAGATATAGAAAAGTCTAATATTTTTATAAGGGTTATGAATATTGGAATGGCTTTATTTTTAAGCTTTTGTCTCTTAGCATGGATGTATGGAGAAAGCTTTAATATTATATTAAGATCATTTATAAGTATTTATGGAGTTCTATGTTTCATGTCTTTTTGGCCAGTTTCATATTTATTTGATGAAAAGGATAAAGTAAAAGGAAGTACATTTTACATATTTCAAAATATTTCAGTATTTTTCTCTATTATTATATTAGTTGTTTATATACTAAAGAATTATGATAGAGTTAAAAGCTATTAATATAATTAAAAGTAATATAATTTAAAAAATATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 42813-43433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENQT010000012.1 Clostridium perfringens strain CHD25834R CHD25834R_seq12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================================================================================================================================================ ================== 42813 26 100.0 39 .......................... AAATCTACTTGAATAACTTGATTTAGTATAATTGTTAAT 42878 26 100.0 40 .......................... AAATCGAGATACTGTAGAGTTAGCTAATGCAACTTTAAAA 42944 26 100.0 40 .......................... AAATCTACTTATAACTACAAGAACTTTCTAAGGTTATCTA 43010 26 100.0 172 .......................... TTAAATAAGAACTTTAAATATTAAATTGTTGAAATAGGTATATTGCTATTACTTTTTCTAAGCTGATTAAAATACTTTTATTATTAACTAATATTTTATTAAACAATTAATGTTACAAAAATATATAAATTTATAAAATAATTATTTATTTTACAAAATTTGTTGGGTGGAA 43208 26 76.9 172 ...A..AT.......A.......A.A TTTTTGTAAGATGAAAAGAAAAAATGCTTTAAAATATTAAAATGATTAAAAGATAAATTTTGTATAAATAGTTTTTATTGGTATAATTAAAACATCAAATGTATTTAATTTATATAATAAAGTTTTTAATAACTCATAGAGTATTTAAAGAATGTCTTTAATGCATAAAATA A,T [43217,43222] 43408 26 73.1 0 T..T....A......T.G.....C.A | ========== ====== ====== ====== ========================== ============================================================================================================================================================================ ================== 6 26 91.7 93 ATTGAACCTTAACATGATATGTATTT # Left flank : TTTTTCATAACAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTCTTTCTGTGCGTTTTCTCTTGGACCAGACTAACTAAAAAGCTACGGAACCCTAGAAAACCATATATTATTAAACTTTAATTAACAAATTCAAAATTATAAGTTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGCTTACTGAATAGGTAAATCTTAGTATTTAATTAATGCATTCTTAGAAATATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATCATATGAAATCACCTTTCAGACCTTGCAATAACTAAATTATAAGTTGATTTTATATTAGTGCTTTAAATTAAAGTAAGACACTGGTAAAATAATAAGAGAGACACTGAAATAACTAGCTTAAAGATAAATATAAAAACAAAGAAATGGCTATTTTACAAGCATTGA # Right flank : AAACAAAAGATAAACTAAATTATTTGATTTTTCAATTAATTATTTAAAATCAATTTTAATAAAAATACATTAGATTTATAGGAGGTGAGTATGGTGAAAGTTTTTCAACTAAATGTAAAGGTATATCTTTTAAATAATATAAAGCAGGAAGACGCTTTAACTGAAATTTGTAGTTTTATAGACACAACCTTAGCTAGAGATCAAGAGTTTTTAGAGCTACATAATAAAAATTGCTATAAGATGTATAGTTTTAATTCCTTTTATCCTGTAGAAGAAAATAGAATTTATAAAGAGGACAAGATATATACTTTTCAAATAAGAACTATAGATGTTAAGTTAGCAAATTACCTTTTAAATGAGCTTCACAAAAGTTACACAAGTTCAATAAAGGGGATAAAGGTTGAAGTCAAAGAAATAAATAGACATCATATTGAAAAAGTGTATTCAATAACTCCAATTCTTATTAAGAATGATTTCGGGTACTGGAAAAATCATATGAG # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-90.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 53134-54406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENQT010000012.1 Clostridium perfringens strain CHD25834R CHD25834R_seq12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 53134 30 100.0 35 .............................. GAATATAAGTGGTATATAGCTCCTTTTTCTCCACC 53199 30 100.0 35 .............................. GACTTAACAACAGATTCATTATCAGCCTTAGGATT 53264 30 100.0 36 .............................. AATACATGTTCGTAACCCATTTCTAGCGGACAGTTT 53330 30 100.0 36 .............................. AAATATGGATGCTTCTTTTGAAATTGATTTAAATAA 53396 30 100.0 36 .............................. ATAAAGATGAATTTTATATGCTTAAATTTATAAATT 53462 30 100.0 34 .............................. GTATCCAAGATTACAGCTTGAAAAAATTGAGTTA 53526 30 100.0 36 .............................. TCTTATTTCCTTTAGTAGCTATCTCAAATCCTTCTT 53592 30 100.0 35 .............................. GATCTTAGAAGAGATGTTGAGTTTTTAATTTCTTC 53657 30 100.0 36 .............................. AAGGCTTGGCGTATAGTTAGGATATCCGTATTAAAT 53723 30 100.0 37 .............................. TCCTTATTTCTAAGTTCTTCTAGTTTCTTGCAATATC 53790 30 100.0 36 .............................. TGAATACTTAGACCAGGAAGATGATTTTGAAGATGA 53856 30 100.0 35 .............................. GTAGGATTAAGGTTTGATATTGATTTGCCTAATAC 53921 30 100.0 35 .............................. TAAATAACAGAACTGTTTTTACCACTTTGTCCAAA 53986 30 100.0 35 .............................. AATATAGTGTTTACAATTCTTACGTAACTTTCAAC 54051 30 100.0 35 .............................. GCACCATCTACTGGCTTAGAAATTGGAGGATTATC 54116 30 100.0 35 .............................. TCGAATAAATCTGGGTTACTTTTTTGTATCGCAGA 54181 30 100.0 35 .............................. CGTGAAACATATACATGTTAGAGCCTTTGGTTTCG 54246 30 100.0 35 .............................. TTTTATATAATTTAAATCAATTACATTTATTATTT 54311 30 100.0 36 .............................. GAATTAGTTTTTGTTAATACATACGACAATGAATAC 54377 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 100.0 35 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : GTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTCAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAAGTTTGCGAAACCCTTGAAATAACTAAGTTTTAGGCTGATTTTCGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATTATAGTATAAGTATTGAAATAATTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTACAAGG # Right flank : GCACCATCTACTGGCTTAGAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //