Array 1 16112-15879 **** Predicted by CRISPRDetect 2.4 *** >NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 16111 31 100.0 37 ............................... GCAGCGAGCCGGACCATCTCACAGCGGCGCTGAGCCT 16043 31 100.0 37 ............................... ACTTGGACCGGCTGGAGATCGCCGAGGAGAAGATCGG 15975 31 100.0 35 ............................... CGGGTAGCTTCGGCCCATGCTTGACGGGCCCAGTG 15909 31 87.1 0 A.............T....G...T....... | ========== ====== ====== ====== =============================== ===================================== ================== 4 31 96.8 37 GGTCCTCATCACCCCTCAGAGGGATCGCAAC # Left flank : TCCCACCCCCACCGCCCGATCATCGCCGCCCTCTGCGCTCTCGCCGCAGGCGAGAACACCGCCCCCACCGAAATCGCCCGTCGCTCCCTCGGCCTGTCCCCCGAGGCCGCACACCACCTCGTCCGCCGCCTGACCACCCTGATCGCAACAGCGGGAATCGACTGGACCGAGCAGCTCCTCACCCCTGCCGAGAACCATCCCGGAGACGGTTCGACCACCCCATTTCGGAGGCGAAACGACCACCAAGCCGCCTAGTCCGCTTCCAAGAGACGCTGAACAGCCAACCCCGAGACCACCACCCATGCCCAGCCTTCCAGAGGAAAGGCACGCTCGCTCACCCAGCGACACGATGCCCACTGGCGAGCTACCGTGGTCGTGCAGCTCTTACTCCCGCCGTGCTTGTGCGTCCTACCTGGGCAGATGCACAACCGACGGTCCGCTGCAAAACCGGACCGTAGCCGGTGGGCTTCCGTGCCTCTGGCCTGCGGCTTTACCCTGGG # Right flank : GCCGACGCCGCGTTAGTTCCTGCCTCGAACACCGCCCGGTACCCCAAAGCATTCACGACTTCCAGAGGACGAATCAGAGAACCCCGGTGAACCTTTTCAGCACGCTGCTCCCGTAAGCCGGGATGGGTGCACCCCTGTCAAAGGCGCAGCCTAGGACCTGCAACGACGAGGCTCCCGTCTCCACCCCTTCAAGGTCATGCGTCGAAAGGGACTATCGGCCGTAGCTACTTGCCGTACTTGAGGATGACGCTGCTCTGGTAGACCTCCCTCTCGTCCGCAAGGGCGCCGACCGCCCAGACGGAAGTGGTCTTCGGAATATGGGCCAGCGCGTTGATCTCCGGCCGCAAACCATCCTTTCTCGGAAGGGAGACGGTCTTCCACTTGCCGGACTTGTAGTGCAGGAGCTTCTGCCCGGCCCGCATCCACAGGCCACCCTTGCCGTCGTAGACCAGGTCGGACAGCACGCCCTTGACCGGAGCGGTCCTCTTGGTCCACTTCTT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCTCATCACCCCTCAGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 275599-275308 **** Predicted by CRISPRDetect 2.4 *** >NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 275598 30 100.0 34 .............................. CTCGTGCTGGTGGGGGTCAGGCGCGGATGACGGT 275534 30 100.0 34 .............................. GCAAGCGCCTGCTCGGCGGCGGCACGAGCCCGCC 275470 30 100.0 37 .............................. ACCCCGAACGCCGCCCACCAGCCCACCGTCCCGTGCT 275403 30 100.0 36 .............................. GCGATCTCGGCGTAACGCTCGCTGGTGCACAGCGTC 275337 30 93.3 0 ..........................TG.. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.7 36 GTCCTCATCACCCCTCAGAGGGATCGCAAC # Left flank : GAACCCGGAGCGCAGAGCCGGCCACGGCCGTGAGCACCGGAAGCCCCGCAGCGGCACCTTGACCACAGTCACAACGGAGATCCGGCCTTCCGCTTTTCAGAAGTGAGAATCCTGCCCTACGACCACATCAGCCGTGCACATAGGGCTGCCGGGGCCTGCCGCAGGTCGGTGACGGCTGCGGACGTTGCCGTCACCGCCGTCAGCGGGACGGTCCGGAGTGCCCGTCCGCGCGGACGGTCAGCAGGTGGGACAGACGGCTTCGTGCGGACGGGCGCTCCGGGGCGCAAGGGATCTGGGGGACGGCGCAGTCCCCCACAGGCGCGCTCGTCCAACCTGGGGACACGACGCCCGCCGCCGGGCTAGCGTGATCGTGATGGCTCTTGCTCCCGTTGCGCTGGCTTGCACGTTTTACCTGGGCGGATGCACAACCGGCGGTCCGCTGCAAAATCGGGCCGTATCCGGTGGGCTTCCGCTCGTCTGGCCTGCGGCTTTACCCTGGG # Right flank : TCGTTGGCCTGCACCCCCGTGTCCGGCCGAGCGGGCGGCGCGGCGGGACCGGCCCGGAGAGGCCGCATGCCCGCTGCGCTGGTCCGCTCGGTGGCGGCCGCGTCAGCGGGGCCCTTGAAGACGTAGAGAAAGTTCTCATCCGGTGCTCTGGCACCACTGGTCGCCTGGAGCTCTGGTGCCCCGGAGTCCCACGGCCGTGGCTAGGTGATGATCTTGCGTAGGGCCTCGTGGGTTTGTTCGGCGAGGCTGACGGCGGCGCCTAGGCGGTTGTCGATGGTGATCTGGGCGCCGGGTGGGCTGGTGTCGGTGTTGAGAGTGCTGGCGTACTGGTCCCAGTTGGCGAGTTTCCAGGCGTCACGGGGGGCGTCGCGGAGCTCGATGTACTCGTGCATGGAGTCCAGGTCGCAGTGGAGCCAGACGGTGACCACGTCCACGTTCTTGGCCTTGCAGCGGTGAGTGAGGCGGTCGAGCCAGGTGGGGTTGTTGAACTCCTCGACGAA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTCAGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 340275-339980 **** Predicted by CRISPRDetect 2.4 *** >NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 340274 31 100.0 35 ............................... GAAGAACTGAAGTGGCAGGCCAAAGGGGAATCCAG 340208 31 100.0 37 ............................... CCAGGTCTTGACAAATCAACAGGGAGACACATGACCA 340140 31 100.0 34 ............................... TGGACGGCCGGCCGCTCACCCACGCCGTCCACAT 340075 31 100.0 34 ............................... TCATGCCGGTAGCGATGGTCGCCAAGCTACGCAT 340010 31 90.3 0 .........................A..G.A | ========== ====== ====== ====== =============================== ===================================== ================== 5 31 98.1 35 GCCCTCATCACCCCTCAGAGGGATCGCAACC # Left flank : CGACGGTTCTCAACATCTTGCAGCGGATCATGACCTCATGCGCCCTCGTTGTGCCCTGCCGCCGGCAAGTCAGGAGCCTTGCCAGGTCCTTCCACCCCAAGGGCACCAACGCCCGCTGATGCCGTTGGCCTGCTGGTGACGGCCGTTCGGACGCACTGGCGCTCGCTGGTGTTGCCGTCAGGGTGGCCGTCACCGCTGTCGGTGGGGATGGTCCGGAGTGCTCGTCCGCGCGGACGGGCAGCAGGTGGGACAGACGGTATCGCGCGGACGGGCGCTCCGGGGCGCAGGGGTCTGGGGGACGGCGCAGCTCCCCCAGAGGGGAGCTCGCTCAAGTCGGCGACACGATGCCTGCCGTCGGGCTACCGTGCTCGTGATGGTTCTCGCTCCCGTCGCGCTGGTTTGTGCGTTCTACCTGGGCGGATGCACAACCGGCGGTCCGCTGCAGAATCGGCTCGTATCCGGTGGGCTTCCGCCTCTGTAGCCTGCGGTTTTACTCTGGA # Right flank : TGGCCTCGGCAGCGCGAGTGATGTAGTCGTGGATTGCCTTATCGGTCCAGTGAGGGCCGCCGTGTTGTGGTGGGGATCCTGGTCAGCTTTGGGTGCTGTCCGGCCCGGCGGTTCGCCACCCGGCGACCGGCACTCACGCCGCATGCGCCGGGCGGCGGCACGCAGCGCCGCCGCTCTTGATCTCAGTAGGATGAATTCGGCAGAGTTGCGGGGTTAATGGGCACGAGTCTTCGTCAGGCGTCTGCAAGACGCCAGAGCAGATCGCGGTAATAAATCACAAACTGATCAACTGCGTTATCTATATCGTAGAAGTCTCGACTTCCAATTTCATCAAGCCTCGGACATTGCCTAATTTTTAACCTCCGGGATGCCAACCATAAAATTTTCCCTAGGATACCCGGTTTTAACAGAAAACCCACCCCTTCTAATCTTTATATAATTTTGATTGGGTACATCAAAGGTGCACCCATGACTTTCTAGTATTGCTCGAAGTTTGCGGA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCATCACCCCTCAGAGGGATCGCAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 421227-420039 **** Predicted by CRISPRDetect 2.4 *** >NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 421226 29 100.0 32 ............................. TCCTGCTCCAGCTCGGTCTGCGATGGAATGCG 421165 29 100.0 32 ............................. CGTTACACGACCGTGCGTGCATACCCGGGGGG 421104 29 100.0 32 ............................. GTCGTCGTCGGGACCGTGGTGGTCCCAGAGGG 421043 29 100.0 32 ............................. GGGCCGCCGAGATCCGCGCACGGCTCGCAAGG 420982 29 100.0 32 ............................. GCTCGGGACGCGCTCGCCGACTTCGATCGCGG 420921 29 100.0 32 ............................. GCCGGGCTGTCCCGGCGGGCACCGGTGTACGT 420860 29 100.0 32 ............................. AGGTCGTAGGCGGGGATGGTGCGGCCGTGGTT 420799 29 100.0 32 ............................. AATGTTTTGCAGTGCTGTGGGGCAAGGGGGCC 420738 29 100.0 32 ............................. CATTCCTGCGCTCCGCGGACCGCCCACGCGGC 420677 29 100.0 32 ............................. GCCTGACCCGCCGTTCCGATACGGAAGGAGCC 420616 29 100.0 32 ............................. GGCCCGCCACCCGATGCGCCCGGGGCGGGCCG 420555 29 100.0 32 ............................. GCATCATCCGCGTTGCGAGGTGACAGCCCCAG 420494 29 100.0 32 ............................. GCCCCAGACGGCACCCCGGGCAAAGATGCTGC 420433 29 100.0 32 ............................. CTGGATGCTGTCCAGGCCGAGGTCGACCTCAC 420372 29 100.0 32 ............................. CGGGTCGGAGACGCGCTGGAGCTGCTGGTGGC 420311 29 100.0 32 ............................. TGGCCGACTATGAGCACCACATCGCCTATATT 420250 29 100.0 32 ............................. CATTCCTGCGCTCCGCGGACCGCCCACGCGGC 420189 29 100.0 32 ............................. TGGCCGCCTTCGCCGACCCCGCCGGGGCCGCC 420128 29 96.6 32 ............................T GACGGACAGTGACATCCCCCGTGGGGGAGCGG 420067 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.8 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : TCCGGGCAGATGCACTCAGCCCGGAGGAGTCAGTCGCCCTCATCGAGAAGACCGCCGCAGAACTGGCGTGAGAGACGGAGTCTGCGATGGCTCACTACAGCGTGCACGACGCTACGTGGCGTAGGAGCTCCCACAGCGGCAGCTCCGGGGGTGAGTGCGTAGAGGTCGCTCACCTGGACTCTACGACCGCCATCCGCGACTCCAAGAATCCCGGCGCTGGCTTCCTGGCCATGAAACGAGAAGCCTGGGGCAGGCTTCTAGCAGAGATCAAGCAAGGCACGTACGACTTCTGATCAGCATCCCAACTGCTTCTGCTGCCACCGGACACAGAGATGGCCAGGCATCCAAGCCGCCCCCGACGCACGGCTAACCCTGTACACAACCACTCATACGGACACCGGCAAAGAAGAGACCCCAACAGGACAGCGCCCGATATGTCCAGATCGAAAAAAGTAATGGATTCTGGCATCCTCCTGAGATAAACCCGCAGGTCAGCCAGT # Right flank : GACGCGACGATCATCAGCCCATCCACCGCCAGCTGCTCCCCGCGCATCGTGCCAGTCTGGGAGGGCGGCCCAGTAGGCGGCGAGCGCGGCTTGGCATGGCCGCCGCGTCTTGCGGTATGGGGCGTTACGGGGACGGGAGACGAGGAGTGGTTGTGCGCAATTGCCACTCTCCGCAGAGCTATATTGTCAGCGTATCCGGGTAATCGGGCGGGGTAGGTGTGTCACCATCGCCCCATGGGCCGTAATGACACCCCCAAGCCAGACCCGTGCGCCACCTGCAACGGCCAAGGCGGATGGTGGGAATACGGCAACGGCCAACCGGGCAAAGCCAAGCCCAAACGGTGGATCAAATGCTGGGACTGTAACGGAAGCGGGGAGCGGAAGTGAACGATCTCCACGAGGCTCCTTGCCCGGCCTGCCGGGGGCGCGGCGAGATCGTCATGACCGGCCGGAAGGGCAGTGCGTGGATCAGCATCCAGTGTGAGGACTGCCGTGGCACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 995804-996158 **** Predicted by CRISPRDetect 2.4 *** >NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 995804 30 100.0 36 .............................. CTGGCGAGCCGCGCCAACAGGTCCTCAGGGATGGGC 995870 30 100.0 35 .............................. CAGTACCCGCAGCACGTCTCCGGCATGTCCGTCAC 995935 30 100.0 35 .............................. CCTGGCGGACCCAAGCAGCCGCGGTGCGCGCCCTG 996000 30 100.0 34 .............................. GCCTCTTGGCCCGGCCCGTGTCCGCCAGTGCCAC 996064 30 100.0 36 .............................. GGGTTCCTGGAGTCTTGGCAGAGCCCGGACCGGAGC 996130 29 83.3 0 ................A.G.A..-...G.. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 97.2 35 GTCCTCATCACCCCTCGGAGGGATCGCAAC # Left flank : TCCATCCCGCGCATATCCCGCGACGGCCGAAGGCCTCTTCAGGGCCTCAGCTTTCGGCAATCGCTCGGCGTCCTCGGCCTTCATCCTTGTCAGTTCGTCCCGCCCCAAGGTCATCAACACCTGTGGTGCCGCTGGCCGGCCGTTGACGGCCCCGTCCCGGTGCGTCGCTGTCGCCGTCAGCGTTGCCGCCACCGCTGTCGGCGGGGATAGGTCCGGAGTGCTCGTCCGTGCGGACGGTCAGCAGGTGGGACAGACGGCATCGCGCGGACGGGCGCTCCGGGGCGCAGGGGGTCTGGGGGACGGCGCAGTCCCCCAGAGGGGAGCTCGCTCAAGTCGGCGGCACGATGCCCGCCGGCGGGCTACCGTGCTCGTGATGGTTCCTGCTCCCGTCGCGCTGGTTTGCGCGTTCTACCAGGGCGGATGCACAACCGGCGGTCCGCTGCAAAATCGGGCCGTATCCGGTGGGCTTCCGTCCCTGTGGCCTGCGGCTTTACCCTGGG # Right flank : CCTGGCCTTGACGGCGTGGGTGGTGTGGTCGCGGGCAGCCACATCGCTCTTATGAGGAGCGGTTGTGTTGCGGCGGGAGTTCTAATCGGCTTTGGGCGTTGTCCGGCCCGGCGAGGTCGGCGGGCCGGAGCGGCGGCGCGTAGCGCCGCCGCTCTTGATGTCAATGAGCTGAATTCGGCAACTCCAAAGGCCAAGTAGACGTCTAGAACTGGGCACGGTGCTGGATGCGCACTTTTCTGATTACCGTGAGTTGGCTGGGGTCTATCCTGATCGCTATCGCTCTGATCTCGCCTTCTCCCTGCACAACCTCGGTGTTACCTTCTCGAAGCTGGGGCGCCATGATGAGGCGACTAACGTCTGGTTGGAAGCTGAAGCTCTCCGTGAGGGCTCCTAGTCCTTCTGAAAAAACAGCCGGCTAGGCCAGGGGCGACCTGTGGAGGTTGCTGCCTGGCTCAGGTGAACCGTCCCTACCCACTGACGTGGGCGGGCTTGAGCTTGTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTCGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 1034892-1034536 **** Predicted by CRISPRDetect 2.4 *** >NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1034891 30 100.0 37 .............................. CCGTGCCGGACACCTGACCTGTGCCGGGAGCGGTCTT 1034824 30 100.0 33 .............................. ACAGATGGCGGTCGTGCGGGGCCAGCGGGTCAT 1034761 30 100.0 37 .............................. GCGATCTCCTCTTGCCTTTTTGCGAGTTCGATCAGGT 1034694 30 100.0 36 .............................. ACGTGGAGCTGCCGGTACAGGTCGGCTTCCGAACCA 1034628 30 100.0 33 .............................. GGGCACAGGCGCGGGTTGGCGATCGACCCGCCG 1034565 29 86.7 0 A......................-..TG.. | T [1034541] ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 35 GTCGCTCATCACCCCTGGAGGGATCGCAAC # Left flank : AAACCGTGCGGCAATACCAACATGCCACCAGTGGACTGGCGCCCCAAGACCGTCCATCAGAGCGGTTGAGATGGCCCCCGTTTCACCGAACAAGATCACCCGAGTCAGCGCACCCCAGGGCTCCCCATGTCGGCGGCTTCGTAGCCGTACCGAGTCGTCCCCTGAACCAGTCCCCCAGTTGGCCCCATGCCACCGTCCGGGCTCTCTTCGGCCGTCAACCAAGCATGGACCCCACAGACCTCAAGGCTGTCCACATACCAGAAGACAACATGTCGGCATACATCCGCATGCCCACCATGTCACGACCCACAGCAGGCCGTAGCCTGACCAGGTGAAGAGCGACGACCGGAATGCCTGCGGAGACGAAGAACAGGTGTCACAGCAACACGATCACCATCGCACCCCTTCTGACCTGCGGCGCTGCACTACCGCCGGACCGCTGCAAAACCCCTCGCTCAACCCGCCTTCAGGACGCCTCTGAGCTGGGACTTTACTCTCGG # Right flank : CGTGGCTCCTTAGCGTGATTGGCGACGGTCAGTTCTTCGCGCGGCGTTGTCTCTTCGGGATAGTGGGCCTTGCCCTCCCGGGGTTTTAGGGTTGCGACGGCCTGGCGGAGGGAAAGGCGGCTCTCGCTGTGCTCGTTCCGGCCTGGGGCAGAGATCTTTCCTCCTTCGTCGGAAAGATCTTGTCCGGCCGGACCGCCGCCTTGCCCTCCGCGGGCGGCCGTCGCAGGTGGTCTTTCCTCCGGGAGGGCAGGCCCTTGGCCCTCCCCCGAAGTGGAAGGACCACGTTCATGAACGCACCTGCGGTGGCCGGGGAGCTGGTGACTCGGCACGCTGAGCTGGGGGATCTGGTGGCGTTGCTGCGGGAGCAGCAGGGCCGCAAGGTCGACATCGTCGCCTCCGCTTCGGCGCTGCGGGCCGAGGGAGGGCGGCTGCTGATCTCGGGTACCGAACCGGTGCTGTCGCCCAGTGGGGTCACTCGCACCGATGGCGTCTACCGGCCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 7 1044294-1045387 **** Predicted by CRISPRDetect 2.4 *** >NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1044294 30 100.0 38 .............................. GTGGGCCGGATATCGGAGTCCTGCGGGTTGGCAAGGAT 1044362 30 100.0 37 .............................. AGGCGAGACGCTCGGCGTATTCGGCGCCGACTTCAAC 1044429 30 100.0 39 .............................. TTGGGGTCGACCACGTCCGGACCGGCGCCCTGTTGTCTG 1044498 30 100.0 37 .............................. CACTGCCAGGCGTACATGGGGTCGTCGACGCCGGGGA 1044565 30 100.0 38 .............................. GCCGGACCGAGGCTCCGGCCGAGGCCGCCGAGGCGCTG 1044633 30 100.0 38 .............................. GCCGACGGGTGCAGCTCCGGCCACTGCTGCGCCTGCTG 1044701 30 100.0 35 .............................. CGGGCGGAGCGGGCCGGGGCGGTGCCGGTCAGCAC 1044766 30 100.0 34 .............................. CGGCCTGGCCGGCGGCCGCCCTGGTGATCGCGAC 1044830 30 100.0 38 .............................. CTCGGTGGCGTCTGCGCGGCGCTCGTCTCGCCGCTCGC 1044898 30 100.0 34 .............................. GCGGGCAGCGTGCCCTTGCGGTAGGCGACCTCCC 1044962 30 96.7 34 ..........G................... ATGGTGATGCTGGACGCCGCCCGCCGCAGCACCC 1045026 30 100.0 38 .............................. CCGTCCCAGTCCTGGAGCAGGATTTCACAGTCTCCGGG 1045094 30 100.0 36 .............................. TCCACAGCGGGCGGGGAGATCAGCAACGCCCCCAGC 1045160 30 100.0 36 .............................. TCCACAGCGGGCGGGGAGATCAGCAACGCCCCCAGC 1045226 30 100.0 37 .............................. TAGGTGCCCCACATGCGCAGGATGTCGCCGGTGCCAC 1045293 30 96.7 35 .............................T CAGATCAGCGAGCGGGACCAGCCGCAGCGCCGGGC 1045358 30 83.3 0 ...........T...C...A......G.G. | ========== ====== ====== ====== ============================== ======================================= ================== 17 30 98.6 37 GTCGCTCATCACCCCTGGAGGGATCGCAAC # Left flank : CACCACCGTCCACCACCGAGCCCTCAAGCGAAAGGTCTCCTACGAAGAGCTCCTCCACCTGGAGGCCCTCAAAATCGTCCGACTCTGCCTGGAAGGCACTCCCTACAAGCCGTTCCGCCCCTGGTGGTGACCGATGTTCGTCATCGTCGTCTACGACACCCTCGCCGAACGCAACCCCCGCGTCCTACGCACTTGCCGCCGTTACCTGCACTGGGTACAGCGCAGCGTCTTCCAAGGCGAACTCTCCGCAGCCCAGCACCGAACCTTCATCTCCGAGATCAAGCAACACATCGACCCCGGATACGACAGCGTCCTGATCTACCGGACCAGGACACCCCACCACATCGAAACCCAAACCCTCGGCCAGACCCTTGGCAACACCGACCCCGTCCTGTAAGAAGAACCTTCTGACCTGCACATCTGCACTACCGCCGGACCGCTGCAAAAACGCCCGACCAACCTCCCTGCGAGATGCCTCTGAGCTGCGACTTTACTCTCGG # Right flank : CACGCTAAGACCTGTAGACATCGGTGATTCAGCGGCTACTCATCCTCCCTGGAGAAGCCGCGACTCGGAGTCGCTGATGTTATTGAATAGACTGGATTTTCCAGTAATTTAACTACTCTAATTTATTGGCACGGGTGGATTGGTCTGGTGTTTGTGAATTTTGCTGGAATGAATGATTTTTGTTCAATTTGGATGTTCTTTGGGTGTTGAATTTTTCTGGCGACTAGATGGTTGCTTGTGAATATTGATTCAGGGTGGGGTTAGCGCTTCCAGCTTGTCGTTTCCGCCGCTGGGTTACTCGGCAGTGGTCAGGTCTTCGATGTGGGGAGTGATAGCTCCAGAGCGGTTTCAATGTGTTCGGCGGTGGGTTCGGAGAGGCCTGCGAGGTCGCTGATTGTCCAGGCGATTCGGGTGATCCGGATGGCTGTTCGTATTGACAGTGATCCTGTCTGGATCGCTGCTTCGAGAGGGCGTAGGGCGGCGGTGGATGGCATGAAGTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 8 1054521-1050708 **** Predicted by CRISPRDetect 2.4 *** >NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1054520 29 100.0 32 ............................. TAGGGTTTGGGCCGCTGACCGACGTAGACATC 1054459 29 100.0 32 ............................. GGGACGGCCCTGGTCGGGCTGCTGGACGCCGG 1054398 29 100.0 32 ............................. GCCCAGGCCATGCTGGGCGAGGAGCAGTACGA 1054337 29 100.0 32 ............................. GTTCGACCCGAGCAACCTGTCCGGCCCCTACG 1054276 29 100.0 32 ............................. GCGGCGACAACCAGGCGCACTTCGAAAGGTTG 1054215 29 100.0 32 ............................. ACGGAGGGGGCGGAGGCGTCCGACGGGTCGCC 1054154 29 100.0 32 ............................. GTGGGCATCAGCCCTCACCCTTCGTCTTCTTC 1054093 29 96.6 33 ............................A GGTGCGAGTGAACCGCTTGAATTGAGCCTCGGT 1054031 29 100.0 32 ............................. GCCGCCGAGGTGCACGCCCTGCGGCGAGCGTT 1053970 29 100.0 32 ............................. GGGTCTGCCTGGCCGTCGGTGTGGGGCGCGAG 1053909 29 96.6 32 ............................T CAGGCCACCCAGGCCGTCGCCCCGCCCGGTCA 1053848 29 100.0 32 ............................. GTGCGCCGTCTGGATGTGCAGGCGTGGGTGCG 1053787 29 96.6 32 ............................C TTCGCCCACATGTCCAGCCCCCTCTCTACGTC 1053726 29 100.0 32 ............................. GCGCTGCGGGCCGCCGAGGCCCGCGAGGAGGC 1053665 29 100.0 32 ............................. TGGCCGAGGAAGTCTTCGGCGTCGGCCAGACA 1053604 29 100.0 32 ............................. GAGCACCTTGATGAGTACCTCTCCCGCTTCCC 1053543 29 100.0 32 ............................. GCTTACGGCGACAGCATGGATGATGTGCGCTC 1053482 29 100.0 32 ............................. GGCTGGGGTGCGGACTGCTGCTGGTGGATGCA 1053421 29 100.0 32 ............................. CCGGTCACCCTGCGGCGGAGGGTCCTCTACAA 1053360 29 100.0 32 ............................. CCTGACGCTGCGCGAAAAGCGTGCTTGCCGCG 1053299 29 100.0 32 ............................. GCGTTCCCTGAGTGGCGGGACAGCCACACGGG 1053238 29 100.0 32 ............................. TACTTGCAACCTCGGGGCGGGCCCGCGCATGG 1053177 29 100.0 32 ............................. TACGCCGAGCTGTCGACGGCGAGCGTGGCGCC 1053116 29 100.0 32 ............................. CAGAACGCCCCGGGGACCAGCCGGGGCGCCCA 1053055 29 100.0 32 ............................. CTCACGGCCGTGATCGCCGCGTTCTGATCGGC 1052994 29 100.0 32 ............................. TATGGCTTCCTGATGCAGGTCACTCATGAGCT 1052933 29 100.0 32 ............................. GGCGCTAGGCGACCCACGCAGCCGCACCCGCG 1052872 29 100.0 32 ............................. TTCTTTAGGCCGCCGAGGAAATTCTTGACGAT 1052811 29 100.0 32 ............................. CGGAGATCGGTGCAGCCTACCGCCTGACACTG 1052750 29 100.0 32 ............................. AGGCCCCGTATGGGATCGCGGAATTCGGCGAG 1052689 29 96.6 32 ............................T TCGGCGAGTTTGGTCCGGTGCGCATCTCTCGA 1052628 29 100.0 32 ............................. ATCCTGCCACAGGTCGTCTTCGCCGGGGTCCT 1052567 29 100.0 32 ............................. CACTGGTCGGATCATCGCGAATGCTGCGGCGC 1052506 29 96.6 33 ............................A GTGGCTCAGGGGATCACGCTCCGCGGCGTGGCA 1052444 29 96.6 32 ............................A CGAACGGCTGCCGGTCCCGTACATACACGGCC 1052383 29 100.0 32 ............................. ATTTGCCAACAGCCCGCCGCTCATCACGTCGT 1052322 29 100.0 32 ............................. CAGTGGTGGGACCGGGCCCGGACCGCGTTGGA 1052261 29 100.0 32 ............................. GTGGAGCCGGACACCTTCGACTGCACCAAGAT 1052200 29 100.0 32 ............................. GTGTTCTCGCTGACCATGTTCGTCACGGCCAG 1052139 29 100.0 32 ............................. CAGCGGGAGGAGCTACGGCAGCGGTTGCGGGA 1052078 29 100.0 32 ............................. CCGACGCGGGTGGAGTAGACGATGCGGGTCTG 1052017 29 96.6 32 ............................T CTGCGCCGATTTCAACGAGCGCGGCATCCCTA 1051956 29 100.0 32 ............................. GCGTGGGGATGGACGGTCAGGGGAGTTCGCGG 1051895 29 100.0 32 ............................. CCGACCTCGTCCTCCAGCTCCACATAGTCGTA 1051834 29 100.0 32 ............................. TCCTCGCCAACATCAAACGCATCCCGCAGGCC 1051773 29 100.0 32 ............................. CGGTTCACTCGCACCTTGCAGCAGGATGCGAT 1051712 29 100.0 32 ............................. CGTGGCGACACGGTGTGCCGGTGGTGCTCTCT 1051651 29 100.0 32 ............................. ACCTAGTCACCGCGTTCGGCTTCGAAGCCCGC 1051590 29 96.6 32 ....................A........ GACAACCCCCATGACCGACAAGGCTACGTGCC 1051529 29 100.0 32 ............................. CGGCCCCACTAGGCGATCCCACCGCCTAGCAG 1051468 29 100.0 32 ............................. GTGGTCTCAGGGGGGCCGAGGACGACGGCTCC 1051407 29 100.0 32 ............................. AGCTGGTGGCCCCGCCGGCGGTGGACAGCACC 1051346 29 100.0 32 ............................. TTCTCCGACGCCGCCAAGGGCTTCTTTGCTGG 1051285 29 100.0 32 ............................. TACCGGCGGCGCGTGCTGGGCGGCCGGATCGA 1051224 29 100.0 32 ............................. CGTCTGAGCTGGGAGAACCTGGAAACGCAACA 1051163 29 100.0 32 ............................. TGGTCGGGCACGGGAGTGGTCGGTTCGCCGCC 1051102 29 100.0 32 ............................. TCGGTACGCCGGGCGCGGATGCGGGCGTTCAG 1051041 29 96.6 32 ............................T CTACTGCACCCCTGAAGAATTCATCGAACTAC 1050980 29 100.0 32 ............................. ATGTCCAACTGTCCGGTCAGCCCGAGGGCGCG 1050919 29 96.6 32 ..T.......................... CTGCGCCACGGGTCCTCCTTCGGGCTTCAGGG 1050858 29 96.6 32 ..T.......................... CCTTCTGTAGCCAGGGGGTTAGCTTTTGCCCT 1050797 29 86.2 32 ..T.....T..A...............T. GACAGAGCCAAGCTTGCTCGAATCGAGGGTGC 1050736 29 69.0 0 .....T...AG.T.A......ACA..G.. | ========== ====== ====== ====== ============================= ================================= ================== 63 29 98.7 32 GTGCTCCCCGCGCAGGCGGGGGTGGTCCG # Left flank : TTCGTCTTGTTCGTACTCCGAAGCCTCTGTGACCAGTTTCTGATAAAGGTCACCGACCAGCACCTGAAACGACGGCGACACTTTACCGATATCGTGCAAACCGGCCCAAAAACAGACAAGGCTCCTCATATGCGCAGCGACGCGCTCACCAAGCACATCCGCACGCAAGACCCCCAGCCCAGCGGTCCACACATCCCAGAGCGCCCCGGCAATCGCCGCTGTATCGATGAGATGGCAGACCACCGGATAAGGCCCCGGCAGCCCATCTCGCTTCCCCCACAACCGCGCATCGACGGACCGCAGAGCCTCCCCACCAAGGCCGCCCATAGATACGACCCCCGTCTCGCAACTCACATCTTTGGCTTCGAGACAACTGCATCACACCCCACCGACAAAATCGCCAAGATGCATAGACTCCCTCTCGTGCCAGTCCAGCCTTCACTCCAATCCACAAGGTCACAAATCAGTAACGCCGCCCTATAATCCCAGGTCAGCAAGGG # Right flank : TTATCTCGCTAACTTCCTGCCAGCCCCTCGCGGTTCTTCTTGTGCGGGCAGAGCGTCAGGAGTTTCTCCTGGGTAGGCACTGGCTTGCCCAGGTGGGCAGTCATGATTCCAAACATGACTTCACCCAGGTCAGAGGTCAGTACAAGGAGGCTGTCTCAACACGAACGCATCGTCCTTTGGACGGCAGGCATCCCGTGGCCGCGGCGGTCGGCGCGGAGTCACCTACAAAGTGTGTCTGCAAGTGGATCCGCACTCGGGGAAAGGCGGGTGGCCTAGTGCACTGGGCGTGCTGGAACATCGCCGGCCAGCGCAGGGGCAGGAGCTTTCGCAGCCGGTCTCTCCAGCCAAGAGGTTCCACAGCCAGGTCAAAGCGGCGGCGCTGGCCGGTCAGTCGTTCGACGTCAAAAGCGGCCTGCCGCTGTCGATGTCGCCCCAGGACCGTAAGGATCGGCAAGGTGTCGCCGGAAAACAGACGGCGGGCATGGTTGAGGCCTCTTTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 1064326-1072042 **** Predicted by CRISPRDetect 2.4 *** >NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1064326 29 100.0 32 ............................. GCGTCCGCCAGGGCCCGCCACCGCTGGAGCAG 1064387 29 100.0 32 ............................. CTGTACCGAGTGATCGGGCGGTGCAAGGTCGC 1064448 29 100.0 32 ............................. AGGTCCCCGCCTACCTCACCCTCGGCTTCGAT 1064509 29 100.0 32 ............................. GCGTCCGCCAGGGCCCGCCACCGCTGGAGCAG 1064570 29 96.6 32 ............................A TCGAAACACCGTTGATGTTGACGTCCACAATC 1064631 29 100.0 32 ............................. GTGCTGCAGGCCATCCAGGACCTGATCGCCCA 1064692 29 100.0 32 ............................. AGGCCCCGGGCGGTCGGGTCTGGTAGCCGCCC 1064753 29 100.0 32 ............................. CGCCTCTTGAATGGCCTCCTTTGGCGTATTCC 1064814 29 100.0 32 ............................. CTGACCGGCAAGCGCTGGAACGAGAACTGGGC 1064875 29 100.0 32 ............................. GCCGAGGAAGAGGCCCGGCTGCGGGCGGCGCA 1064936 29 100.0 32 ............................. GCTCCCGGGCCGGCGTCGGTCGTGGTCTTCAG 1064997 29 100.0 32 ............................. TCGTACGGCTCGTCGTCTCGCTTGCGAGTGCT 1065058 29 100.0 32 ............................. CCCGCTCGCGCGGGCTTTGATCTTGTTCAGCC 1065119 29 100.0 32 ............................. GCGACCGCGGTCGCTGCTGCGGTCGCCCGGGC 1065180 29 100.0 32 ............................. CCTTTGCTGGCCTGCTTGCCGGAGTCGAACAG 1065241 29 100.0 32 ............................. CAAAGTGCTCGGCCCGGTGGCCGACCTGCGCG 1065302 29 100.0 32 ............................. TGACAACATTGCCGGTAGAGACGGTCCCGAGC 1065363 29 100.0 32 ............................. TCGGCGCCGGGTGCGTATTCGCGGTGGATGGT 1065424 29 100.0 32 ............................. CGGATCACGGCGGGCGCGATCCGGCTGGGTGA 1065485 29 100.0 32 ............................. TATCCAGCAGGTCGTCGGCCTCGTTGGCGCCG 1065546 29 100.0 32 ............................. CCCGCCTGGCCCGCAGCGAATCCGCCCACGAG 1065607 29 100.0 32 ............................. TCGCCGGCCTGGTGTCGGTCGACGAGTTCAGC 1065668 29 100.0 32 ............................. GCGACGCTCTCGCAGAGCTGCAGCTCACCGCC 1065729 29 100.0 32 ............................. CTCTGATGATCGTCGGGCCGCCCGGCGTCGGC 1065790 29 100.0 32 ............................. GAGTACGTCGCCCGGGGCGGCGCGGTGGTGGC 1065851 29 100.0 32 ............................. GCGACGCTCTCGCAGAGCTGCAGCTCACCGCC 1065912 29 100.0 32 ............................. CCGCGGGTGAGGATGTCCAGGGCCTCCTGGGC 1065973 29 100.0 32 ............................. CGATCTCCCCCGACACCGGCCGGGGGTTGCGC 1066034 29 100.0 32 ............................. CGCCCGGCCCTGCTGCCCGCCGAGCCGCGGCC 1066095 29 100.0 32 ............................. CTCTCGGGGGCCATGGCCAAGGCCGGGCCGTG 1066156 29 100.0 32 ............................. TTTGTCCAGCTCGGCCTTTTGGGCCCGCAGTC 1066217 29 96.6 33 ............................A GCGGATGGGCGCCTTGGCATAGCCCTCGATCCG 1066279 29 100.0 32 ............................. GCGAGGAGACCGGCACCGGGCTCGACGGGGAG 1066340 29 100.0 32 ............................. CCTTTGCTGGCCTGCTTGCCGGAGTCGAACAG 1066401 29 100.0 32 ............................. CATCCTGCGTGCCGATGCGCAGACGCTGGCCA 1066462 29 100.0 32 ............................. ACCTGTTCGTGGTCGGTGCTGATGGTCAGCTC 1066523 29 100.0 32 ............................. GCGTCCGCCAGGGCCCGCCACCGCTGGAGCAG 1066584 29 100.0 32 ............................. GCGACCGCGGTCGCTGCTGCGGTCGCCCGGGC 1066645 29 100.0 32 ............................. TGGGGGCAGGATCCGCTCCGCACCGAGGCGGA 1066706 29 100.0 32 ............................. GTGCGCGCGGGCCTGTACGGGTCGGTGCGCGG 1066767 29 100.0 32 ............................. TGCACGGTACTGCCCAGCCGGACGTAGCGCCC 1066828 29 100.0 32 ............................. GCGGCCCCACCACCCTGACCAACGTGGCCCCC 1066889 29 100.0 32 ............................. AACACCCGGCCACCCGGGTCGATGTACAGCTC 1066950 29 100.0 32 ............................. ACCTTGACGGGCGTGTCGGTGACGGTGAATGA 1067011 29 100.0 32 ............................. ACCGGGCGGGGTTGTCGCCGAGCAGACGTAAC 1067072 29 100.0 32 ............................. TGGTTTCACCGGACCCGGTCGGGGCCTGCGGG 1067133 29 100.0 32 ............................. GTGCTGCGCGCCATCAAGCGCATCCCGCAGGC 1067194 29 100.0 32 ............................. GCCATCCGCCGCCCCCTCCCCTGCGCCGACCG 1067255 29 100.0 32 ............................. ATTGGGCGGAAGCCGACCTCGTCCTCCAGCTC 1067316 29 100.0 32 ............................. CGTCGGTGGCGGTCAGGGTGCACACCGAGTCG 1067377 29 100.0 32 ............................. GCCATCTCTCACCTCCCAAACTCTTGGCAACC 1067438 29 100.0 32 ............................. ATCCTCAACGCTCTGGTTGGTCTCGCCGAGGA 1067499 29 100.0 32 ............................. CAACCAACGTCGCCGGCCGCCCGTCCTGGTGC 1067560 29 100.0 32 ............................. GCGTTTATCACCAACGTCCTGGCTCCGGCGTT 1067621 29 100.0 32 ............................. CCGTCGCCTCGCTGGCTTGATCTCCCGCTACG 1067682 29 100.0 32 ............................. GCCCGCAAGACCCTCTGACCCCGCCCTCACCT 1067743 29 100.0 32 ............................. TACTCCTCCACCACGTCGTCGCTCTCGTTGAC 1067804 29 100.0 32 ............................. TTGATCGGCAGGTCCAGCAGCTCGCACAGGAC 1067865 29 100.0 32 ............................. GCGCTGGCCGAGGCCGCCCAGGCGGCCGGGGC 1067926 29 100.0 32 ............................. ACGGGGCAGCGGCTGCTTTTCCATGCCCGCGG 1067987 29 100.0 32 ............................. GTGTGGCGGCGGGCGCTGCTGGACTGGCTGCC 1068048 29 100.0 32 ............................. CCGCCGGAGATCACGATGACGCCGTCGCCGAG 1068109 29 100.0 32 ............................. ACGGCCGGGTCGGACAGGTGCTCGGCGAGCCG 1068170 29 100.0 32 ............................. GCTGCCGCACATGGGGAGCGCCGCCGAGGAAC 1068231 29 100.0 32 ............................. GCGGCCGCCGCGGGGCTCTATCTCTTTGGGCG 1068292 29 100.0 32 ............................. GACCTGGCCCCCGACCGGCTGAACGAGGCCGG 1068353 29 100.0 32 ............................. AGGAGCTGTACCTGGCCGAGCTGGACGAACAG 1068414 29 100.0 32 ............................. CTGCTCCCCTTCACGGAGTGGTGAGGATGGCG 1068475 29 100.0 32 ............................. CGCACTCCGCACCGGCGTCCGCACCCAGGATC 1068536 29 100.0 32 ............................. ACCAGCAGCCCGCACGGGGCAGGCCGGTCCTC 1068597 29 100.0 32 ............................. GCGCTGCACGAAACGACCGAGGCTCAATTCAG 1068658 29 100.0 32 ............................. TCGCCTGGCCGACCTGTCCTCCCGTGCTCAGC 1068719 29 100.0 32 ............................. ACGATCACCGACTACCTCGACCACGTCGCGCC 1068780 29 100.0 32 ............................. GTGGCGTACTCGGCCCGGTACAACCGCTGGTC 1068841 29 100.0 32 ............................. GCGTCGGTGGCGGTCAGGGTGCACACCGAGTC 1068902 29 100.0 32 ............................. GTGTAGGCGGGTATCGAGGCCTGCCGGTTGGG 1068963 29 100.0 32 ............................. CGCAGCTCGGCGGCGGCGGCGACGAGCACGAT 1069024 29 100.0 32 ............................. GGTCACGACCAGATGCTGCGGTTGGCCGCCTA 1069085 29 100.0 32 ............................. GAGTACCACCATCGAGAAATGGACTCGAGCCC 1069146 29 100.0 32 ............................. TGGGGGCAGGATCCGCTCCGCACCGCGGCGGA 1069207 29 100.0 32 ............................. GGATTCCTGACCGGTCTGTACCGGCAGCAGGC 1069268 29 100.0 32 ............................. CGAGGGATCGTGCCCAGCGGCAGGCCGCTGCC 1069329 29 100.0 32 ............................. CTCGCCGACGACCCAGTGCTGGTGGACGTGTC 1069390 29 100.0 32 ............................. TGACAACATTGCCGGTAGAGACGGTCCCGCGC 1069451 29 100.0 32 ............................. GTGGGCATCAGCCCTCACCCTTCGTCTTCTTC 1069512 29 100.0 32 ............................. TAGGGTTTGGGCCGCTGACCGACGTAGACGTC 1069573 29 100.0 32 ............................. CGGGCAAGCCATATGTGTGGGGCGGCGTCGGC 1069634 29 100.0 32 ............................. TCGTCCACCGTCGCCCAGCCGGACCCGTCGGG 1069695 29 100.0 32 ............................. GTGCTCTCCTTTACGGTTGGGTGGGGTGCTCT 1069756 29 100.0 32 ............................. GTAGGAGGCCGGGGATGCCCAACCCCCCCAAG 1069817 29 100.0 32 ............................. GCTGTCTACGAGGCCACCGGCACGTCGTCGAA 1069878 29 100.0 32 ............................. GTCGCGCACGGATAGCCGGTCTCCGGCTTGCT 1069939 29 100.0 32 ............................. TCGTAGTAGACGCGGCGGCCGACCTTGCCGAG 1070000 29 100.0 32 ............................. GAGGCCGCCGGCCCCTGGCCCGGCCCCCGCCC 1070061 29 100.0 32 ............................. ATCAGGGCGGGTGAGCTGCTGCCCGACCGGCC 1070122 29 100.0 32 ............................. CCTCCATGTCGGAGGGGTCCGGGAACTCGAAT 1070183 29 100.0 32 ............................. TAGGCGCCGGGGACGTAGAGAGGGGGGGCTGG 1070244 29 100.0 32 ............................. TAGCGGTCACCGGCGGGCACCTGGGCGCTGGT 1070305 29 100.0 32 ............................. TTGCCTGACTTGCCGTCCCCGCACGCACGGGC 1070366 29 100.0 32 ............................. ACGAGCTGGCCGCGGTGATGAATGGCCTTCCG 1070427 29 100.0 32 ............................. GCCAACCGGGAGGCCGCCCGCTACCGCACACG 1070488 29 100.0 32 ............................. CGTTGTACCGGCGCAGGCACTCATTCACCACG 1070549 29 100.0 32 ............................. GGGGTGCCCCGTGGCGCATCTGGGCACGGTGG 1070610 29 100.0 32 ............................. GGTCGTGAAGGTCAATCCCGCGTACACGAGCC 1070671 29 100.0 33 ............................. CGCAGATCCGCGGTGATCACACCGCCGCCGCCG 1070733 29 100.0 32 ............................. CCGAGTTTCCGAAGGAATCGGCCGGTCGGGCA 1070794 29 100.0 32 ............................. CGGTCACTGACCCCCCTTCGGGAGGGCCGCGA 1070855 29 100.0 32 ............................. GCGTACACCAGCTCGTTGGGCTGGTCGGGGCC 1070916 29 100.0 32 ............................. GGCGCTGATGAGTTGGCCGACAATGCGTCGGC 1070977 29 100.0 32 ............................. AGCCGCCGAGAGCCATGAGGACTTGCGCGGCA 1071038 29 100.0 32 ............................. GCCGCCGGATTGAGCAACCGCGTGCCGGCCTC 1071099 29 100.0 32 ............................. GTCACCGTAGAACGCCTGATCGATGCGCTTGG 1071160 29 100.0 32 ............................. CAGACGTTGCTCGTGACGCTCTCGTCATACCG 1071221 29 100.0 32 ............................. GTGAGAGCGCACCGGGACGGGTCGGCCACCGA 1071282 29 100.0 32 ............................. CACGTGATCCTCGAATCGCTGATTCAGGAGTA 1071343 29 100.0 32 ............................. GACCACGGCCCGGACGCCCCGTATGTGATCGC 1071404 29 100.0 32 ............................. GCACGTAGGCCTGGGTGGTCCAGTAGGTGGCG 1071465 29 100.0 32 ............................. TCGGCGAACCCCTGCTTGAGCTGCAGGTTCGC 1071526 29 100.0 32 ............................. AGTGGAACCAGAACCACCCGCGCGAGGGTGAG 1071587 29 100.0 32 ............................. GTGATCGTCGGGCGGCCCAGCCCGTCTACTCC 1071648 29 96.6 32 ............................A GTACGGGGTGATCTGGCGGTCCTGGGCCGGCC 1071709 29 100.0 32 ............................. TACGCGTGAGAGCTGGCCCGCCGCCTGCGAGG 1071770 29 96.6 32 ........T.................... TGGCCGATCCCCCAGCGCACCCCCGAGCAGAT 1071831 29 100.0 32 ............................. TACGCCGCGCCCGTGGCAAACGTGGTCGCCAT 1071892 29 100.0 32 ............................. GCGGACGAGATGATGTTCGCGCCTCACAAGGC 1071953 29 96.6 32 .....................A....... ACTCTACGGAGGTCGATGACCTGTCCACCCAA 1072014 29 93.1 0 .........................A..T | ========== ====== ====== ====== ============================= ================================= ================== 127 29 99.8 32 GTGCTCCCCGCGCAGGCGGGGGTGATCCG # Left flank : CTTCCGCCTCCTCCCGCGCATCGTCGCCGACATCCAATCCCTCCTGGACCCCGACGACGGCACCCGCCGGGAGGACGCAGAAGAAGCCACCGAAGAACTCGTCGACCTTTGGGACCCCGACTTCGGCCGCCTGGCCGGCGGCACCAACTACGGACACGACTGACATGGCCACCATGACCGTCATCGCCACCACCGCAATCCCCGACCATCTACGCGGCGCCCTCACCCGCTGGATGATCGAACCGGCCCCCGGCCTCTACGTGGGCACCCTCTCCGCCCGCGTCCGCACCGAACTATGGACCGCCGTCTCCGCCTCCATCGGCGACGGCGCCGCCGTCCTCCTCCACCCCGACGCCAACGAACAGGGCTTCACCCTCCACACCGCCGGCCGACGCCGCCGAACCCCCATCGACTTCGACGGCCTGACCCTCATCGCCCTCAACCCCGCCGAGCCGGATAACGAATCGGTAAACCCCTAGTATCGCCCCAGGTCAGCAAGG # Right flank : TTACCAGGCGTCCTGGACTGTGCGGGCGCGGCTGTGCTTCCTAAGCAGGCAAGGATGACTCATCCCAGTTGTCCTGGTTGTGCTGTCCTCAATGGTGCTCGTGGATTGTGAGTTTCCAGGCGCTTGCTTTCGTGCGCGATGTGCATGGTCACTGAACATCTGGTCGGTGAGCCGGTGGGTGCCACGGCCACCACTCAACTGGGTGGATTGTCTGGTGTACCCTCGGTCGGCCACTGCCCGGCGGTGGTCAGGATGACTTTCTGTACGGCGCTCGCACTTTTTGAAGCGGTTCTCGGCGATAGGGCGGTGGCTCCGGACTACTTCCTCGCGCGGAGAACCGGATCATTGGCCTTTTGCGAGTACCGGATGCGGACTACCCCGCTCATGTGGTCGAGGCACCTGTGCGGTTGGCGTTGGTGGGAGCGGATTTGGGAGCGGAGAGGTGCGGTAGGTCTGGGTCAGATGAGGGCAGCTGTGGCGGTCTCGGGTGTGAAAAGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 1073354-1074905 **** Predicted by CRISPRDetect 2.4 *** >NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1073354 28 100.0 33 ............................ GTCAAGGGCTGGCACCGCCCCGGACCCGGGGCC 1073415 28 100.0 33 ............................ GGTGCGGGGGGTGACGTTGCGGCTGGGCATGGC 1073476 28 100.0 33 ............................ GTGGAGCTGATCGGTGGGCCGTACGACGGGCAC 1073537 28 100.0 33 ............................ GTGACAACATTGCCGGTAGAGACGGTCCCGAGC 1073598 28 100.0 33 ............................ GTTCCACACGCCGCGGATGCCCTTGTTGTAGAC 1073659 28 100.0 33 ............................ GGGCAAGTTGGCGTATTACGCCGATCTGCCGGG 1073720 28 100.0 33 ............................ GGTTCGACCCGAGCAACCTGTCCGGCCCCTACG 1073781 28 100.0 33 ............................ GGCGTTTCGCTCGACCGGGTCTTTCACCGCCCG 1073842 28 100.0 33 ............................ GGGTGGTGGGGTCGGCGGTCGGCAAAATTGCAA 1073903 28 100.0 33 ............................ GGTGCTGGATGAGGACGTGGGCCGCGTTACATC 1073964 28 100.0 33 ............................ GGCGAGCGGACCGCACGTCCATGTGCCGTCGTC 1074025 28 100.0 33 ............................ GTGACCTGGGGGTCCACCACGGTCAGCGCCCTG 1074086 28 100.0 33 ............................ GTCCACGAGTGCCTTGACGGCGGTGTCGGGGTC 1074147 28 100.0 33 ............................ GTCTCCACGGTCTCCCTGCGCAGGAACGCGTCG 1074208 28 100.0 33 ............................ GACTCTCGGCCAGGCCGACCAGCGCGAGGTCGG 1074269 28 100.0 33 ............................ AGCCGCCGCGCTGATCGACCAGACCATGATCGA 1074330 28 100.0 34 ............................ AGCGGGCGGCCAGCAGCTCATACTGCCGGTCGTC 1074392 28 100.0 33 ............................ GGTCTACTCGCTGGCCCGGTACAGGGAGGAGGC 1074453 28 100.0 33 ............................ GACGACTGCCGCACATCACCGCGGGCAACCAAC 1074514 28 100.0 33 ............................ CACAACCCCCTGCACGCCTTCGAGCACCTGCCG 1074575 28 100.0 33 ............................ GTACTCCTTGACCAGCGGCCGGTCCTCGCCGGT 1074636 28 96.4 33 .....T...................... GACGCCAACAAGACCGAGCTGGAGAAGCTCACC 1074697 28 100.0 33 ............................ TTGGCAAGGGCGCGGCGCGGGCGGCAACGGCGG 1074758 28 100.0 33 ............................ GCTGCTCGGTCATCAGAACGGGCCCTCCGTGGC 1074819 27 92.9 33 .........G.......-.......... GGTTCGGCGGCGGGTGACGGCCGCTGACATCAC 1074879 27 71.4 0 G.G..........-..GC.....TG..A | ========== ====== ====== ====== ============================ ================================== ================== 26 28 98.5 33 CTCTTCCCCACGCGAGTGGGGGTGATCC # Left flank : ATCGACCTCGGTGGCGGCCGGGTCGTCTAGGCGGTGTTGCGGGGCGGACGCCCAGTTCGCCAGGCAGGGCGCGGCCTTGGGGCGACGAGGAAACCGTCCTCGTTCAGATCGGTGCGCGGCAGGGCGGTTCCGGTCAAGAGGGGGTGTCGTCCATCAACGTCTGCGGGCGCTGCTCCCTGGGCAGCCGTACCGCTTCCGGACGTGGCGTCGACTGGAGGGCGTCATGGTCTTGGTGAGGATTTTCAGATCCAGTGAGCTGGAGGAGAGGCCGGCGCAGCTTGCTGCCTGCGGTGTTGGACGGGCGTACCGCGGACCCGATGCGTGGGTGCACTCCCAGGGATGAAAGGCATGGGTGGCCGTCTCCGCTTCCGCCGGCGACGGCACCACTGCTCTCCTCTACCCCGACGCCAAGCGAGCAGGACTTCACCTTCGTCGCCTTCGACTTCGCCCGGGAAGATAACGAATTGGTAAGGTGCTGACATTGCCCCAGGTCAGCAAGT # Right flank : AGGTGGAGGGCGCTATGGCCCTCTCAGGGGCAGGTGCTGCTTATGTAGGCGGAGGTGATCCAGTAATACGTCCGAGAATTGGGTGCAGGCGTTGTGCTCTCTGCGCGGGCGAGGGTAGATAGCTTGGGTCATCCTGGTTGCATCGTCCTTAGTAATGCTTGTGGACTGAGAATTCGCGGTGGACAAGGCCAGTTAGTCTTGTGGGAAAACAAAGAGGGTTCTTGGTCGCATCGGGGATTCCTGGATTTGGGGTGCTTCATCGCAGGTCGGGGAGGGGTGAGGAGGTTTTTCGCTCTTCGGTGCTCAAGGTTGCTCGCGGAAGACTCGATCAGTGGGCGGGCCAGATCTTTTCAGGGCGTGGCTTTGGGGGCCGAAGAGAGGGTCTCGGGGGGCGTCCGGTGATGTGACGGCCTCGGGCGCGGTGTCCTTCCCGGCTGCGACGCACCTGTTTCGGTCGGCGGAGACGGCAGGTTGGCAAGGCCCGCTGGGAGAGGTCATTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCACGCGAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 2438492-2439317 **** Predicted by CRISPRDetect 2.4 *** >NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2438492 30 100.0 37 .............................. CTTGAACTTGGGGCGCGTCTGGATGCCGTAGGGCCGG 2438559 30 100.0 37 .............................. ACGAAACCGCCGGAGCTACCGCGGCCACCCATGTCAG 2438626 30 100.0 37 .............................. ACATGCCGCGAATCGAGCCGCGGCAGATCCAGTTCTA 2438693 30 100.0 36 .............................. CCGTCCTCACCGGCCGGCAACCGCAGCGCAGCCGCC 2438759 30 100.0 36 .............................. TGTCCACACCGGCGGTCTGCCGGTTTGATCATGGAC 2438825 30 93.3 34 ..........T...........G....... TGCCCGCAGAGCTCGTAGATCCCGAAGGGACGGT 2438889 30 96.7 36 ...............G.............. TAGATGAGGGGGTCGCCCTTGCGGGTGTACGCCAGC 2438955 30 90.0 35 .........G......G..........G.. TCTCCAGATACGCGACGTCCAGATTCAGCGAACTG 2439020 30 90.0 38 ......G........TG............. GCGTGCAAGTAGCCGAACGTGGTGATCTGGACGAACAT 2439088 30 86.7 40 ......G..G..T....A............ CCCAGGCGGTCGTAGATTTCCCTCGCGCCCCTATCTGAAC 2439158 29 80.0 34 ..T.......-.T...........T...GA TGCAGGGCATGATCCGCGGCGTGCTGTCCATGGC 2439221 30 86.7 37 C....T...G............G....... AGGGGCGTGTACTCGCAGCGCGGCGCAAGCAGCTGCC 2439288 29 80.0 0 ..TT....T.............G.-...G. | A [2439308] ========== ====== ====== ====== ============================== ======================================== ================== 13 30 92.6 36 GTCCTCATCACCCCTCAGAGGGATCGCAAC # Left flank : CGACGGTTCTCAACATCTCGCAGCAGATCATGACCCCATGTGCCCTTGTTGCGCCCTGCTGCTAGCGGGTCAGGAGACTTGCTAAGTTCTTCCGCCCCAAAGGCACCAACACCCGCTGATGCCGTTGGCCTGCTGGTGACAGCCGTTCGGGCACGTTGGCGTTCGCTAGCGTTGCCATCAGAGCCGCCGTCACCACCATCGGCGGGGACGGCCCGGAAGGCTCGTCCACGCGGATGGTCAGCAGGTGGGACAGACGGCATCGCGCGGACGGGCGCTCCGGGGCGCAGGGGGTCTGGGGGACGGCGCAGTCCCCCAGAGGGGAGCTCGCTCAACCCGACGGCACGGTGCCCGCCGCCGGGCTACCGTGCTCGTGATGGTGCTCGCTCCCGTCGCGTTGGTTTGCGCGTTCTACCTGGGCGGATGCACAACCGGCGGTCCGCTGCAAAAACGGCTCGTATCCGGTGGGCTTCCGCTCCTCTGGCCTGCGGCTTTACCCTGGG # Right flank : CCTGGCCTTGTCGGTGTGGGGACGTGGGTGCTGGTGGCCTCATTGGCGGTGTGAGGGACTGGCGTGTTGCAGTGGGGTTGGTCGGCTCTGGGGGTGTCCGGTCCGGTGGCGCGTGGTGCTGCTGCGCTTGATCTTAAAAGAGATCGATTTGGTTGTTCTAAAGGCTGGTTAGATGTTCGCAGTTTAGGTTGAGATTGTTTTCTGGGGGTGGAGTGTCAGGATTTCTGTTTTGTTGGAAGATTTTCTCAGGGAGAATTTGTTGGCGCCTCCACTGTTTCGAGTGCGATTTCCCATGGGAAGGAGTTGAATTTTGTGTTTCCTGCTCCTGGGGGGTGTGGTTCGAATTTGCCGGGGCCTAGGAGTATGTGGACGCCTTCGGCTTGGAGGGTGGCTGTGCTCTGCTGGAAGGGGCGGCGGGTGGCTAGGGCGGTGTTGACGAAGGGGAGGACCACGATGGGGATGTTGAGGTTGGGGGCTTCGGCGAGGATGCTCAGGGCGTA # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTCAGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 12 3128006-3126757 **** Predicted by CRISPRDetect 2.4 *** >NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3128005 29 100.0 32 ............................. CTGCCTTGATGGCAATTTGGATGCCGATCCAG 3127944 29 100.0 32 ............................. GCGACGTCCTCAATGGCGGTCATCAGAATCCG 3127883 29 100.0 32 ............................. GGCCACTTGAACGCCCAGACCCGCCAGATCAA 3127822 29 100.0 32 ............................. GGAGGGGAGGTCGCTCGCGCCGACGTGGTCAA 3127761 29 100.0 32 ............................. CCGATGGCCGAGCGGACGACCTGACCGAACTC 3127700 29 100.0 32 ............................. TCGGCGATCACGGCCGTGAGCTTGGCGTGTCA 3127639 29 100.0 33 ............................. CACCCTGGACGCGGCTTTCACCGGCCGCGACAC 3127577 29 100.0 32 ............................. TGCTGCGGGGGCTCACCTCCCGCGCCGAGGAG 3127516 29 100.0 32 ............................. CGTTCGGCCAGGTCTTCGATGGTCAGGTGCTT 3127455 29 100.0 32 ............................. TCGCTGGGCACGACCTCCACGGCTCTGGGCGT 3127394 29 100.0 32 ............................. CACTGCAACCCGAAACGCGTCGTGGCCACGCC 3127333 29 100.0 32 ............................. TCCCGAACGTCGGCAAGATCGATCCGAAGAAA 3127272 29 100.0 32 ............................. CCGATGAAGGGAATCGGCTTGTGACGGCGGCG 3127211 29 100.0 32 ............................. GACGAAGCTGCCCCGCGAGGGCAGACAGGGGA 3127150 28 93.1 32 .........A...............-... GGCACGTAGCCGATAAGCACTAGCATGGCCGC 3127090 29 96.6 32 ...........A................. GGCATCCGCGCCACCACCTTCACCAAACAAGA G [3127087] 3127028 29 93.1 32 ............T.........C...... CATCGGCCACTCGGAACTGAACGCGGAGAAGA 3126967 28 89.7 32 .....T....T.........-........ AACGACTCGAACAGCTGCACCGTCGTAGTGAT 3126907 29 93.1 32 ............T.T.............. AACATGATCCTCGGGACGTCGATGTACAAGAA 3126846 29 93.1 31 ..............G......C....... GGCAGGTAGAGGTGGCGGAGATGGCCCGCCA T [3126819] 3126785 29 89.7 0 ........T.T.................T | ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.5 32 CTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : ATGCGTAGTCGCCAGCCACACCACCAGCCGCCGAGCGTCCTCGGCACCTCCCGGCAACTCCGCGGAGATCAGTCGCCGTACTTGGTGAGGAATCCACTCATCCCACAGCAGTCCCGCTACCGCGCCGCTGTCAGCCATGTGCCGCCACAGCGGCAGCCATCCTTCAGCCGCGCGGTCATGCTTGGCCCACACGGCCCGGGCGACAGCCGACAGGCCCTCTCCCAGCCGGCCAGGCTCCTCCCCTTCGATCACGGGAGACAGTTAAGCCCATACTTCACATCGACGCACAGGTTTTCCTGATTTTGCTTGACATCAACGTTCACGAAGGGGGGCGGATCTCGCGCTCTGTTGACTTCCAGCTCTCTTGGGGTTGCCTCCTGCTGCAGTCTCCGTCCACCCTGGGGTGAGAGTCCGCTCGTAGAGCGATGTCCCAAATGTCTGATCCTGTAAAAGTGCTAGATTCTGGCCTGCGCTGGGCATAAACCCGCAGGTCAATCAGT # Right flank : CGAGAGTTACCGCAGACGACGGGACACCATCCCTGCTCTCCGCATGCGGGGATTTCCGCAATGACCAGTGCGCCGCTCGGAGACGGGCTGCTCCCCGTGTGGGGATGGCCCCTCCTGGTGCTTCGCCAAGAGCACATCATTCTGGAGCTAGGAACCCGCGAGCTCTATGAGCTATTCGCTGAAGATATCGGCAAGTAGTTGATGAGTGAAGCACTTATACTCAGTACTCGATCGTTGTGGCCGCTGTGTTTGATTCCTCAAACGCTTCGTTTGTAACACCCAGGACTGCGATAAAAGTCAAGCACTGAGCTGGCACCCCAAGAGGTTCCTGGTCCTTGGGATGTTCCGTCAGCGTTGCTGGTGGTGCGCTGGTTCCGTCATGGCACTGATGTGCCTGCCTTGCTTTGAGTCAGCTCAAGCGCTCAAACAATGGTGCGGTGTCGCCGCGCACCACTGTAAGGATATCCAACATTTCCAAGTTATTGCTTGCTGCTTTGCAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 13 3137606-3139891 **** Predicted by CRISPRDetect 2.4 *** >NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3137606 29 100.0 32 ............................. GGCGTCTCCGGTGAGGTCGTCCGCGTCAGCGG 3137667 29 100.0 32 ............................. GTTCGGGAGCTCGATAGTCATTACCATCCCTC 3137728 29 100.0 32 ............................. GCTGCCATCTACTGGCGGACCGACATCCGCAC 3137789 29 100.0 32 ............................. GGACCCGACTACTGGGTCGCCACCTGCCACAG 3137850 29 100.0 32 ............................. GCCGTCTACAGGATCCACCTCGCCCGACAGGG 3137911 29 100.0 32 ............................. GTCGGGTCCGCGGCTGCACTGGGCGCGCTCTG 3137972 29 100.0 32 ............................. GCGGCAGGGATACCTCGCGACCTGCCGAACTT 3138033 29 100.0 32 ............................. TTTGACGCTGCGCACTGCGGTGATGATCGGCA 3138094 29 100.0 32 ............................. TCCGGTGTCGGCCACATGGCCGGCACCCTGCT 3138155 29 100.0 32 ............................. CGGGAGCGCGAACATACCATCAGACTTTTGTA 3138216 29 100.0 32 ............................. GATCGTCTTATCGCGCCGATCCGGCAGACCCC 3138277 29 100.0 32 ............................. CCTCCGTGCGCTGCGCGACCGCCTTGCCGAAG 3138338 29 100.0 32 ............................. GGTTGTGAATTCAACTAATGGAGAACGGGCCG 3138399 29 100.0 32 ............................. AGGTCGTGCTCGAGCACGGCGGCCTGCAGCTC 3138460 29 100.0 32 ............................. CGCACCCCCTGGAGAAAGCCACCCAAAGCCTG 3138521 29 100.0 32 ............................. AGTTCGCGAACCTCGCCAAGGCGTCCTGACCC 3138582 29 100.0 32 ............................. CCGCTGCTCCACAGCCGTCCACCAGGCGTGGG 3138643 29 100.0 32 ............................. ACCGGTGACCGTCCACGCCAAGCCTGCCCGCT 3138704 29 100.0 32 ............................. GGCTCAAGCCCGCTCAGGGAGGCCCAGCGGCG 3138765 29 100.0 32 ............................. GGCCACCAGGTCGTCTACACGCCGGCCGCGCG 3138826 29 100.0 32 ............................. ATCGAGCCCAGCCCACCGGCGCGGCCGCCGAG 3138887 29 96.6 32 ...........................T. CCTCGCTGCGTGTACTCGCGCTCGCTCACTGC 3138948 29 100.0 32 ............................. CCGTAGATACGGCCGACGGTGGCCTCACGCAG 3139009 29 100.0 32 ............................. GCGGGCTGGGACGGCATGGGTAGGCCTCGGAA 3139070 29 100.0 32 ............................. GGGTGGTCCGGATGGCGGTACAGCGAGCAGTC 3139131 29 100.0 32 ............................. AGTTCGGCCTCGACCCAGGCCAGCCATGCTTC 3139192 29 96.6 32 ............................A CGATGCCTCTCCCCGCGCCCATGACTGCGGTT 3139253 29 100.0 32 ............................. TTCGCGCGGTGATCAAGGCCGCGGTAGAGTCC 3139314 29 100.0 32 ............................. CCGGACAGCGGACGGTACGCGGCTCGGTCCAT 3139375 29 100.0 32 ............................. TGGCGAGCGTGCGGTTCGGCTCCCACACGTAG 3139436 29 100.0 32 ............................. GATCCGGTTGCCCGGGTAGATGATCTCCAGGC 3139497 29 100.0 32 ............................. AGGTCGTCGGTGTCTCCGTAGTCGACGACGAT 3139558 29 100.0 32 ............................. GCGTGGGCGCGTGCCGCGTCTGTTTTGCCGTA 3139619 29 100.0 32 ............................. CCAGGCCCGGGCAGCACGATCCCGTCCCGCTG 3139680 29 100.0 32 ............................. CTCGTTCACTCGGCTTCGTGAGCTCTTCAACG 3139741 29 96.6 32 ............................T TCGACGGGGGTGCCGGACGGCCAGGCGGCCGG 3139802 29 96.6 32 ...................A......... GGGATGTACGCGATCAGGATCACGACGGCGCC 3139863 29 89.7 0 ......................C...TA. | ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.4 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : AGGTGCTCTGGCGGGAAGTCCGCCAGTACTCCGGCACCGGCCGGGCTCTCCTCGCCTACACCACCGACAACGAACAGGGCTTCACCTTCGAAACCTGGGACCACAAGTGGCACCCCATCGACTACGAAGGCATCACCCTAATCCGCCGCCCCAAAACCCAACCGACAATCTCGGCCACCCCGCCACCCACTGGGTGGAGCAAAGCCGCCAAACGCCGCCGTTACGGCAAACGCTGACCCGCATCGCCCAAGCATCCCGACCGCAGCCCCGGCATGGGACGCAGAGTCCGCCCTACCCGTGAAACCAATCTCCACCTTTGCCAACACCTGGATGCCCAAGTGGTGCAGCCGCCACACCTCTCACTCCAGCACCGCCCTCACCTAGGACCACACACCTGGGCGACAGCGGCGGAGGACGACAGAGCGACGCCCGATATGTCCAGATTGAAAGAAGTAATGAATTCCAGCATTATCCTGAGATAAACCTGCAGGTCAGCAAGT # Right flank : CAGCGCGAAGTCGGTTTCCCTGCCCTGCCGTGCCTGTTCAAAGGCGATCGGTTATGACCGGGTCGAGATGGTGGAGCCTGTACAAGGGCGCAGCAGGACACAGATGCGGAAAGAGGACGGCAGGACTCGCGCCTGGCTGAGCATGCCGTTGCTCTGCTGAAGAGTTGGAGCCTCCCGTACAGGCTGCACTGCTGCCTGTACCGTGCCGGTCATATCGCCAAGGCCGTCCTTATTCTGCAAGCCGGCGAGAGCCGTGCTCACTGGGCAAGGCTCAGTCCTCTCCTGTCACCGAGGTGCTCTCAACGGCATAGAGCGTGAAACAGTGCTGTGTCGCCTCCTACCAGGGTGAAGGTGCGCACGGCCGCGCTCAGGCGGAGATGAGGGAGCCCTCGAGGTTGCGTTCGAGGCGGTGATGGAGATCCTTGTCCAGGGCCGTCTCGGAAGCGTTGGCTCGCAGTTTGCCGGTGATCACAAGCACTTCTTCCGGAATGCGCAAATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 4967321-4967933 **** Predicted by CRISPRDetect 2.4 *** >NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 4967321 30 100.0 35 .............................. ATGACGCGCCAGATCCGCTCGGCGATGTACCAGAT 4967386 30 100.0 35 .............................. TGGTCGGGCGTGGCGATCTGGGCCGCTACGGCCTG 4967451 30 100.0 35 .............................. CCGCGCCGCTGGTGGCGGGTGACGGTGATGGTGCG 4967516 30 100.0 34 .............................. GCGGTGCGGGCGGCGTGGATGGCGATCAGGCCGC 4967580 30 100.0 35 .............................. CTGCGGCTATCCGCTTGGCCGCCTGATCCTCGCCG 4967645 30 100.0 35 .............................. CCCCGGGGGCTCCCCGCCCTGCGCGCCACGCTGAC 4967710 30 96.7 34 .....T........................ GCGGTGCGGGCGGCGTGGATGGCGATCAGGCCGC 4967774 30 100.0 35 .............................. CCCCGGGGGCTCCCCGCCCTGCGCGCCACGCTGAC 4967839 30 93.3 35 .....T......................G. GTCACCACGCGCGTGTAACCGTAGGTCAGGGTGGC 4967904 30 90.0 0 ...................A......TG.. | ========== ====== ====== ====== ============================== =================================== ================== 10 30 98.0 35 GTCCTCATCACCCCTCAGAGGGATCGCAAC # Left flank : CCGTGAGTCCTCGTGATTCCCCCCGCTATCGGGCACGCAACGGGCACTCCGTCACGGCCCAGCTACCCTTGGTGGGCCTGCGCATCCTTATCACCTCGTTCCGTCCCAAGGTCATCAACACCTGTGGTGCCGCTGGCCGGCCGTTGACGGCCCCGTCCCGGTGCGTCGCTGTCGCCGTCAGCGTTGCCGCCACCGCTGTCGGCGGGGATAGGTCCGGAGTGCTCGTCCGTGCGGACGGTCAGCAGGTGGGACAGACGGCATCGCGCGGACGGGCGCTCCGGGGCGCAGGGGGTCTGGGGGACGGCGCAGTCCCCAGAGGGGAGCTCGCTCAAGTCGGCGGCACGATGCCCGCCGGCGGGCTAGCGTGATCGTGATGGTGCTCGCTCCCGTCGCGTTGGTTTGTGCGTTCTACCTGGGCGGATGCACAACCGGCGGTCCGCTGCAAAATCGGGCCGTATCCGGTGGGCTTCCGTCCCTGTGGCCTGCGGTTTTACCCTGGG # Right flank : CTCATTGGCCTACACCCCCGTGTCCGGCTGAGCGGGCGGCGCGGCGGGACCGGCCCGGAGAGGCCGCATGCCCGCTGCGCCGGTCCACTCGGTGGCGGCCCGCGTCAGCGGGGCGCCCTTGAAGACGTAGAGAAAGTTCTCATCTGGAAGACGTAGAGAAAGTTCTCATCTGGTGCTCTGGCGCCGGCTCTCAGGCCTCACGACCTGTGTGACAGGTCGTTCTCAGATCCTGTGTGGCGCTCGCTGGGTGCTGGTGGGCTGGGTTAGAAGCGGCCATACGACGGGGTGTCTTCGGGTGTTGGTGGCTGGCGGAGCTTGGCAAGGAGCGTTCTGGCTCGGTGGAGCAAGCGGTGTGCGTGTTGCTTGATCAGGCTCATCAGCGGGTCAGTGCTCGCGTCTGTGGTGGTTGGGTGGTTTGCAGGGAGCTGGGGTGGTTCGTAGGCGGTTGCCGGTGTTCTGGGCTGGGGGCCGACTGGGCTGGATGTGCTGGATGTAGTCGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTCAGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //